Wall clock time and date at job start Mon Mar 30 2020 06:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99779 * 2 1 4 4 H 1.48503 * 109.47255 * 264.61421 * 3 2 1 5 5 H 1.48497 * 109.47156 * 24.61788 * 3 2 1 6 6 H 1.48502 * 109.46802 * 144.61420 * 3 2 1 7 7 C 1.37872 * 120.00006 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00078 * 4.75515 * 7 2 1 9 9 C 1.50700 * 120.00068 * 184.75738 * 7 2 1 10 10 H 1.08996 * 109.46818 * 4.79422 * 9 7 2 11 11 C 1.50701 * 109.47125 * 124.79893 * 9 7 2 12 12 C 1.38220 * 120.01485 * 60.00131 * 11 9 7 13 13 C 1.38221 * 120.02796 * 179.97438 * 12 11 9 14 14 C 1.38267 * 120.04710 * 0.02562 * 13 12 11 15 15 C 1.38170 * 120.02959 * 359.97438 * 14 13 12 16 16 C 1.38436 * 120.01119 * 239.72446 * 11 9 7 17 17 F 1.35101 * 120.02644 * 359.97438 * 16 11 9 18 18 C 1.53000 * 109.46778 * 244.79955 * 9 7 2 19 19 H 1.09005 * 110.83452 * 298.67672 * 18 9 7 20 20 C 1.54813 * 110.90587 * 175.03782 * 18 9 7 21 21 C 1.54108 * 104.18627 * 220.92036 * 20 18 9 22 22 O 1.43748 * 107.29146 * 357.96572 * 21 20 18 23 23 C 1.44379 * 106.97680 * 26.51730 * 22 21 20 24 24 H 0.97001 * 120.00186 * 0.02562 * 1 2 3 25 25 H 1.08003 * 119.98334 * 359.95266 * 12 11 9 26 26 H 1.08000 * 119.97344 * 179.97438 * 13 12 11 27 27 H 1.08002 * 119.98247 * 179.97438 * 14 13 12 28 28 H 1.07997 * 120.01285 * 179.97438 * 15 14 13 29 29 H 1.09001 * 110.48488 * 339.58970 * 20 18 9 30 30 H 1.08998 * 110.49128 * 102.10996 * 20 18 9 31 31 H 1.09002 * 109.87833 * 117.38970 * 21 20 18 32 32 H 1.08997 * 109.87547 * 238.39640 * 21 20 18 33 33 H 1.09002 * 110.61837 * 201.44078 * 23 22 21 34 34 H 1.09005 * 110.61763 * 78.43503 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6104 1.9808 -1.3939 5 1 1.3943 2.6828 0.5832 6 1 3.4851 1.4757 0.8108 7 6 2.0045 -1.1940 0.0005 8 1 1.4673 -2.1278 -0.0766 9 6 3.5076 -1.1962 0.1088 10 1 3.8623 -0.1771 0.2625 11 6 3.9261 -2.0550 1.2743 12 6 3.5875 -3.3948 1.3027 13 6 3.9716 -4.1828 2.3713 14 6 4.6944 -3.6318 3.4133 15 6 5.0340 -2.2928 3.3872 16 6 4.6547 -1.5036 2.3143 17 9 4.9915 -0.1956 2.2847 18 6 4.1109 -1.7571 -1.1806 19 1 3.7886 -2.7855 -1.3441 20 6 5.6558 -1.6599 -1.1556 21 6 6.0296 -1.2187 -2.5840 22 8 4.8087 -1.1326 -3.3379 23 6 3.7489 -0.8644 -2.3948 24 1 -0.4850 0.8400 -0.0004 25 1 3.0223 -3.8260 0.4896 26 1 3.7062 -5.2295 2.3928 27 1 4.9936 -4.2484 4.2480 28 1 5.5983 -1.8626 4.2014 29 1 5.9794 -0.9145 -0.4291 30 1 6.0955 -2.6306 -0.9266 31 1 6.5170 -0.2441 -2.5553 32 1 6.6960 -1.9531 -3.0363 33 1 2.7834 -1.1539 -2.8097 34 1 3.7457 0.1879 -2.1101 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259725638.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:13 Heat of formation + Delta-G solvation = -93.320547 kcal Electronic energy + Delta-G solvation = -18833.493558 eV Core-core repulsion = 15837.557899 eV Total energy + Delta-G solvation = -2995.935659 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.76681 -40.70000 -39.50854 -36.18863 -34.03249 -31.84065 -31.25458 -30.41141 -28.35537 -25.27421 -23.76716 -23.13250 -22.49195 -20.76904 -19.31992 -18.36830 -17.30090 -17.14219 -16.81327 -16.77687 -16.32170 -15.93947 -15.79035 -14.95263 -14.79906 -14.53759 -14.10836 -13.97494 -13.63537 -13.41941 -13.18925 -12.92406 -12.58579 -12.39584 -12.18337 -11.93506 -11.90512 -11.72903 -11.22846 -11.00372 -10.74364 -10.57220 -9.67975 -9.34985 -8.34238 -6.35426 0.38666 0.50964 1.24878 1.29801 1.36473 2.26772 2.81456 3.02892 3.10065 3.52300 3.74426 3.85645 3.99924 4.11524 4.16380 4.29200 4.34676 4.43114 4.56626 4.60306 4.74833 4.82267 4.91159 4.93898 5.02346 5.11255 5.22294 5.29673 5.37181 5.44675 5.54962 5.62777 5.74707 5.94787 6.15379 6.28142 6.70184 7.28729 8.81608 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.015958 B = 0.011594 C = 0.008748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.147646 B = 2414.521094 C = 3199.875207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.030 3.970 3 Si 0.904 3.096 4 H -0.258 1.258 5 H -0.290 1.290 6 H -0.250 1.250 7 C -0.493 4.493 8 H 0.049 0.951 9 C 0.048 3.952 10 H 0.043 0.957 11 C -0.087 4.087 12 C -0.099 4.099 13 C -0.124 4.124 14 C -0.105 4.105 15 C -0.154 4.154 16 C 0.049 3.951 17 F -0.160 7.160 18 C -0.097 4.097 19 H 0.079 0.921 20 C -0.149 4.149 21 C 0.043 3.957 22 O -0.401 6.401 23 C 0.062 3.938 24 H 0.266 0.734 25 H 0.121 0.879 26 H 0.154 0.846 27 H 0.165 0.835 28 H 0.149 0.851 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.062 -6.344 3.462 14.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.168 4.168 3 Si 0.730 3.270 4 H -0.183 1.183 5 H -0.217 1.217 6 H -0.174 1.174 7 C -0.531 4.531 8 H 0.067 0.933 9 C 0.029 3.971 10 H 0.061 0.939 11 C -0.089 4.089 12 C -0.117 4.117 13 C -0.142 4.142 14 C -0.123 4.123 15 C -0.172 4.172 16 C 0.030 3.970 17 F -0.139 7.139 18 C -0.116 4.116 19 H 0.097 0.903 20 C -0.187 4.187 21 C -0.033 4.033 22 O -0.320 6.320 23 C -0.014 4.014 24 H 0.075 0.925 25 H 0.139 0.861 26 H 0.172 0.828 27 H 0.183 0.817 28 H 0.167 0.833 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.124 0.876 33 H 0.103 0.897 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 12.897 -6.190 3.224 14.664 hybrid contribution -0.358 1.520 0.134 1.567 sum 12.538 -4.670 3.358 13.795 Atomic orbital electron populations 1.69992 1.07672 1.27803 1.52311 1.25638 0.95133 1.01599 0.94463 0.86427 0.79850 0.80873 0.79867 1.18312 1.21676 1.17408 1.21008 0.89964 0.93357 1.48735 0.93258 1.18266 0.94594 0.94831 0.89438 0.93928 1.20387 0.95720 0.96072 0.96678 1.20972 0.98813 0.92295 0.99638 1.21526 0.98158 1.01146 0.93347 1.21274 0.97921 0.93651 0.99465 1.21341 1.03177 0.95311 0.97420 1.18035 1.02503 0.78244 0.98250 1.91397 1.91000 1.34730 1.96775 1.22721 0.94005 0.99777 0.95090 0.90266 1.23007 0.95700 1.02805 0.97166 1.23314 0.87318 1.01564 0.91088 1.88772 1.17614 1.92950 1.32709 1.23416 0.90939 0.97865 0.89156 0.92519 0.86077 0.82839 0.81720 0.83286 0.91868 0.89136 0.92176 0.87611 0.89674 0.94204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.10 13.96 21.45 0.30 -56.80 16 2 C 0.03 1.70 5.47 84.65 0.46 2.17 16 3 Si 0.90 44.21 25.92 68.60 1.78 45.99 16 4 H -0.26 -12.02 6.80 99.48 0.68 -11.34 16 5 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.25 -11.93 6.21 99.48 0.62 -11.31 16 7 C -0.49 -26.48 7.94 25.60 0.20 -26.27 16 8 H 0.05 2.89 7.89 -2.91 -0.02 2.86 16 9 C 0.05 2.14 1.29 -12.29 -0.02 2.12 16 10 H 0.04 2.03 3.44 -2.39 -0.01 2.02 16 11 C -0.09 -3.51 4.29 -19.82 -0.09 -3.59 16 12 C -0.10 -3.45 8.77 22.26 0.20 -3.25 16 13 C -0.12 -3.30 10.04 22.27 0.22 -3.07 16 14 C -0.11 -2.54 10.04 22.26 0.22 -2.31 16 15 C -0.15 -4.46 10.03 22.31 0.22 -4.24 16 16 C 0.05 1.84 7.25 22.38 0.16 2.00 16 17 F -0.16 -6.61 16.19 44.97 0.73 -5.88 16 18 C -0.10 -3.78 2.45 -9.49 -0.02 -3.80 16 19 H 0.08 3.04 7.44 -2.38 -0.02 3.02 16 20 C -0.15 -4.75 6.11 31.59 0.19 -4.55 16 21 C 0.04 1.29 7.70 72.36 0.56 1.85 16 22 O -0.40 -14.98 11.52 -148.98 -1.72 -16.70 16 23 C 0.06 2.57 6.60 72.67 0.48 3.05 16 24 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 25 H 0.12 4.28 7.51 -2.91 -0.02 4.26 16 26 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 27 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 28 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 29 H 0.06 2.09 7.84 -2.39 -0.02 2.07 16 30 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.08 3.67 8.14 -2.39 -0.02 3.65 16 34 H 0.04 1.73 6.13 -2.38 -0.01 1.72 16 Total: -1.00 -64.60 281.00 4.87 -59.73 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.98 Total: 13.58 kcal Atomic # 6 Polarization: -42.71 SS G_CDS: 2.80 Total: -39.91 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: 0.30 Total: -56.80 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -1.72 Total: -16.70 kcal Atomic # 9 Polarization: -6.61 SS G_CDS: 0.73 Total: -5.88 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.78 Total: 45.99 kcal Total: -64.60 4.87 -59.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259725638.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.591 kcal (2) G-P(sol) polarization free energy of solvation -64.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds