Wall clock time and date at job start Mon Mar 30 2020 06:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99926 * 2 1 4 4 H 1.48501 * 109.47126 * 264.40333 * 3 2 1 5 5 H 1.48494 * 109.47442 * 24.40769 * 3 2 1 6 6 H 1.48507 * 109.46976 * 144.40863 * 3 2 1 7 7 C 1.37879 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00036 * 4.36001 * 7 2 1 9 9 C 1.50695 * 120.00013 * 184.36058 * 7 2 1 10 10 H 1.08999 * 109.47229 * 34.39049 * 9 7 2 11 11 C 1.50703 * 109.47192 * 274.39066 * 9 7 2 12 12 C 1.38220 * 120.01025 * 299.97638 * 11 9 7 13 13 C 1.38226 * 120.02607 * 180.02562 * 12 11 9 14 14 C 1.38268 * 120.04927 * 359.97438 * 13 12 11 15 15 C 1.38181 * 120.02438 * 359.97438 * 14 13 12 16 16 C 1.38436 * 120.01590 * 119.99935 * 11 9 7 17 17 F 1.35104 * 120.02028 * 0.02562 * 16 11 9 18 18 C 1.52997 * 109.47381 * 154.38933 * 9 7 2 19 19 H 1.09002 * 110.45517 * 52.99958 * 18 9 7 20 20 C 1.54506 * 110.51414 * 175.60264 * 18 9 7 21 21 C 1.54486 * 104.06167 * 118.64741 * 20 18 9 22 22 O 1.44427 * 104.80470 * 23.97721 * 21 20 18 23 23 C 1.44424 * 105.27480 * 319.49169 * 22 21 20 24 24 H 0.96997 * 120.00103 * 359.97438 * 1 2 3 25 25 H 1.08000 * 119.99224 * 0.02562 * 12 11 9 26 26 H 1.07998 * 119.97411 * 180.02562 * 13 12 11 27 27 H 1.07998 * 119.99075 * 180.27992 * 14 13 12 28 28 H 1.08001 * 120.00951 * 180.02562 * 15 14 13 29 29 H 1.08997 * 110.51557 * 237.28888 * 20 18 9 30 30 H 1.09000 * 110.50990 * 0.02562 * 20 18 9 31 31 H 1.08991 * 110.37372 * 142.81248 * 21 20 18 32 32 H 1.09007 * 110.37303 * 265.15195 * 21 20 18 33 33 H 1.09001 * 110.37434 * 281.68054 * 23 22 21 34 34 H 1.08998 * 110.37107 * 159.33829 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6148 1.9781 -1.3934 5 1 1.3925 2.6838 0.5785 6 1 3.4826 1.4771 0.8149 7 6 2.0045 -1.1941 0.0005 8 1 1.4668 -2.1281 -0.0702 9 6 3.5082 -1.1960 0.0998 10 1 3.8315 -0.3708 0.7343 11 6 4.1026 -1.0347 -1.2757 12 6 3.8323 -1.9673 -2.2593 13 6 4.3777 -1.8199 -3.5208 14 6 5.1939 -0.7394 -3.8004 15 6 5.4647 0.1948 -2.8189 16 6 4.9200 0.0473 -1.5543 17 9 5.1857 0.9590 -0.5932 18 6 3.9777 -2.5198 0.7062 19 1 3.5596 -3.3614 0.1538 20 6 5.5210 -2.5929 0.7178 21 6 5.8800 -2.7090 2.2159 22 8 4.6998 -3.2641 2.8363 23 6 3.5868 -2.6004 2.1986 24 1 -0.4850 0.8400 0.0004 25 1 3.1946 -2.8115 -2.0423 26 1 4.1656 -2.5489 -4.2889 27 1 5.6159 -0.6228 -4.7876 28 1 6.1018 1.0389 -3.0376 29 1 5.8659 -3.4719 0.1732 30 1 5.9495 -1.6857 0.2919 31 1 6.7301 -3.3775 2.3516 32 1 6.0997 -1.7253 2.6308 33 1 3.4548 -1.6000 2.6107 34 1 2.6754 -3.1855 2.3210 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259725643.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:17 Heat of formation + Delta-G solvation = -70.635557 kcal Electronic energy + Delta-G solvation = -18972.444099 eV Core-core repulsion = 15977.492135 eV Total energy + Delta-G solvation = -2994.951964 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.34953 -39.28241 -38.11442 -34.51682 -32.09895 -30.33654 -29.90080 -28.95953 -26.65615 -23.44099 -22.41935 -21.87073 -21.12182 -19.07553 -17.25854 -16.96122 -15.81892 -15.69164 -15.45114 -15.20074 -14.84019 -14.53454 -14.09994 -13.58016 -13.20689 -12.83961 -12.55981 -12.41545 -11.95341 -11.85299 -11.70828 -11.18189 -10.93465 -10.85983 -10.81006 -10.35264 -10.10110 -9.79040 -9.67042 -9.25794 -9.24354 -8.69455 -8.31210 -7.92600 -6.20924 -4.23096 1.73160 1.84863 3.28252 3.34774 3.42662 4.18921 4.34177 4.52157 4.87130 5.01589 5.23839 5.26269 5.32549 5.39792 5.50047 5.62105 5.69765 5.85140 5.93606 6.01017 6.11230 6.24834 6.33026 6.43526 6.49743 6.55281 6.58658 6.67626 6.78534 6.88690 6.98521 7.29002 7.35764 7.48340 7.58513 8.33802 8.80877 9.40148 10.89783 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.015292 B = 0.012853 C = 0.009178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.526324 B = 2178.012506 C = 3050.083196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.081 3.919 3 Si 0.862 3.138 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.252 1.252 7 C -0.508 4.508 8 H 0.080 0.920 9 C 0.044 3.956 10 H 0.054 0.946 11 C -0.066 4.066 12 C -0.077 4.077 13 C -0.134 4.134 14 C -0.122 4.122 15 C -0.158 4.158 16 C 0.067 3.933 17 F -0.144 7.144 18 C -0.092 4.092 19 H 0.076 0.924 20 C -0.156 4.156 21 C 0.046 3.954 22 O -0.389 6.389 23 C 0.061 3.939 24 H 0.266 0.734 25 H 0.130 0.870 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.122 0.878 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.907 -2.812 -3.215 11.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.123 4.123 3 Si 0.689 3.311 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.176 1.176 7 C -0.545 4.545 8 H 0.098 0.902 9 C 0.025 3.975 10 H 0.072 0.928 11 C -0.068 4.068 12 C -0.095 4.095 13 C -0.152 4.152 14 C -0.140 4.140 15 C -0.177 4.177 16 C 0.048 3.952 17 F -0.122 7.122 18 C -0.111 4.111 19 H 0.095 0.905 20 C -0.193 4.193 21 C -0.031 4.031 22 O -0.308 6.308 23 C -0.015 4.015 24 H 0.076 0.924 25 H 0.148 0.852 26 H 0.137 0.863 27 H 0.138 0.862 28 H 0.140 0.860 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.719 -2.816 -2.997 11.481 hybrid contribution 0.327 1.510 -0.321 1.578 sum 11.047 -1.307 -3.317 11.608 Atomic orbital electron populations 1.69881 1.06225 1.27282 1.49190 1.24992 0.94652 0.98970 0.93700 0.87176 0.80297 0.83875 0.79735 1.20021 1.21820 1.17608 1.20827 0.87418 0.94804 1.51410 0.90176 1.18497 0.96737 0.94241 0.88017 0.92756 1.20879 0.92668 0.92433 1.00805 1.20860 0.97868 0.99078 0.91722 1.21139 0.98634 0.98367 0.97066 1.20733 1.00001 0.94947 0.98345 1.20978 1.03069 1.01147 0.92513 1.17743 1.00908 0.90130 0.86395 1.91433 1.92579 1.65404 1.62823 1.22399 0.92621 0.99634 0.96432 0.90521 1.23077 0.97648 1.02121 0.96486 1.23324 0.89252 0.98137 0.92354 1.89034 1.15609 1.63917 1.62276 1.23406 0.89302 0.97609 0.91219 0.92399 0.85243 0.86302 0.86217 0.86006 0.91496 0.91001 0.90104 0.92901 0.91977 0.89003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.96 55.43 0.77 -25.45 16 2 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 3 Si 0.86 21.74 24.51 -169.99 -4.17 17.58 16 4 H -0.27 -7.03 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.25 -6.13 5.22 56.52 0.30 -5.84 16 7 C -0.51 -13.15 8.15 -34.44 -0.28 -13.43 16 8 H 0.08 2.22 8.05 -52.48 -0.42 1.79 16 9 C 0.04 0.97 0.98 -92.93 -0.09 0.88 16 10 H 0.05 1.28 4.62 -51.93 -0.24 1.04 16 11 C -0.07 -1.37 3.03 -104.55 -0.32 -1.68 16 12 C -0.08 -1.43 8.89 -39.59 -0.35 -1.78 16 13 C -0.13 -2.11 10.04 -39.57 -0.40 -2.51 16 14 C -0.12 -1.85 10.04 -39.59 -0.40 -2.25 16 15 C -0.16 -2.70 10.03 -39.52 -0.40 -3.10 16 16 C 0.07 1.36 5.98 -39.42 -0.24 1.12 16 17 F -0.14 -3.06 13.40 2.25 0.03 -3.03 16 18 C -0.09 -1.75 2.38 -89.05 -0.21 -1.96 16 19 H 0.08 1.43 7.71 -51.93 -0.40 1.03 16 20 C -0.16 -2.55 6.26 -25.16 -0.16 -2.71 16 21 C 0.05 0.72 7.63 37.94 0.29 1.01 16 22 O -0.39 -7.12 11.65 -35.23 -0.41 -7.53 16 23 C 0.06 1.16 6.83 37.94 0.26 1.42 16 24 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 25 H 0.13 2.33 7.71 -52.49 -0.40 1.92 16 26 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 27 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 28 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.22 6.72 -51.93 -0.35 0.87 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 1.24 7.75 -51.93 -0.40 0.84 16 34 H 0.09 1.72 8.14 -51.93 -0.42 1.29 16 LS Contribution 276.28 15.07 4.16 4.16 Total: -1.00 -29.17 276.28 -6.42 -35.59 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -4.42 Total: 1.53 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -2.39 Total: -22.85 kcal Atomic # 7 Polarization: -26.22 SS G_CDS: 0.77 Total: -25.45 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.41 Total: -7.53 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.03 Total: -3.03 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.17 Total: 17.58 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.17 -6.42 -35.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259725643.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.049 kcal (2) G-P(sol) polarization free energy of solvation -29.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds