Wall clock time and date at job start Mon Mar 30 2020 06:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99926 * 2 1 4 4 H 1.48501 * 109.47126 * 264.40333 * 3 2 1 5 5 H 1.48494 * 109.47442 * 24.40769 * 3 2 1 6 6 H 1.48507 * 109.46976 * 144.40863 * 3 2 1 7 7 C 1.37879 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00036 * 4.36001 * 7 2 1 9 9 C 1.50695 * 120.00013 * 184.36058 * 7 2 1 10 10 H 1.08999 * 109.47229 * 34.39049 * 9 7 2 11 11 C 1.50703 * 109.47192 * 274.39066 * 9 7 2 12 12 C 1.38220 * 120.01025 * 299.97638 * 11 9 7 13 13 C 1.38226 * 120.02607 * 180.02562 * 12 11 9 14 14 C 1.38268 * 120.04927 * 359.97438 * 13 12 11 15 15 C 1.38181 * 120.02438 * 359.97438 * 14 13 12 16 16 C 1.38436 * 120.01590 * 119.99935 * 11 9 7 17 17 F 1.35104 * 120.02028 * 0.02562 * 16 11 9 18 18 C 1.52997 * 109.47381 * 154.38933 * 9 7 2 19 19 H 1.09002 * 110.45517 * 52.99958 * 18 9 7 20 20 C 1.54506 * 110.51414 * 175.60264 * 18 9 7 21 21 C 1.54486 * 104.06167 * 118.64741 * 20 18 9 22 22 O 1.44427 * 104.80470 * 23.97721 * 21 20 18 23 23 C 1.44424 * 105.27480 * 319.49169 * 22 21 20 24 24 H 0.96997 * 120.00103 * 359.97438 * 1 2 3 25 25 H 1.08000 * 119.99224 * 0.02562 * 12 11 9 26 26 H 1.07998 * 119.97411 * 180.02562 * 13 12 11 27 27 H 1.07998 * 119.99075 * 180.27992 * 14 13 12 28 28 H 1.08001 * 120.00951 * 180.02562 * 15 14 13 29 29 H 1.08997 * 110.51557 * 237.28888 * 20 18 9 30 30 H 1.09000 * 110.50990 * 0.02562 * 20 18 9 31 31 H 1.08991 * 110.37372 * 142.81248 * 21 20 18 32 32 H 1.09007 * 110.37303 * 265.15195 * 21 20 18 33 33 H 1.09001 * 110.37434 * 281.68054 * 23 22 21 34 34 H 1.08998 * 110.37107 * 159.33829 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6148 1.9781 -1.3934 5 1 1.3925 2.6838 0.5785 6 1 3.4826 1.4771 0.8149 7 6 2.0045 -1.1941 0.0005 8 1 1.4668 -2.1281 -0.0702 9 6 3.5082 -1.1960 0.0998 10 1 3.8315 -0.3708 0.7343 11 6 4.1026 -1.0347 -1.2757 12 6 3.8323 -1.9673 -2.2593 13 6 4.3777 -1.8199 -3.5208 14 6 5.1939 -0.7394 -3.8004 15 6 5.4647 0.1948 -2.8189 16 6 4.9200 0.0473 -1.5543 17 9 5.1857 0.9590 -0.5932 18 6 3.9777 -2.5198 0.7062 19 1 3.5596 -3.3614 0.1538 20 6 5.5210 -2.5929 0.7178 21 6 5.8800 -2.7090 2.2159 22 8 4.6998 -3.2641 2.8363 23 6 3.5868 -2.6004 2.1986 24 1 -0.4850 0.8400 0.0004 25 1 3.1946 -2.8115 -2.0423 26 1 4.1656 -2.5489 -4.2889 27 1 5.6159 -0.6228 -4.7876 28 1 6.1018 1.0389 -3.0376 29 1 5.8659 -3.4719 0.1732 30 1 5.9495 -1.6857 0.2919 31 1 6.7301 -3.3775 2.3516 32 1 6.0997 -1.7253 2.6308 33 1 3.4548 -1.6000 2.6107 34 1 2.6754 -3.1855 2.3210 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259725643.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:17 Heat of formation + Delta-G solvation = -88.256904 kcal Electronic energy + Delta-G solvation = -18973.208218 eV Core-core repulsion = 15977.492135 eV Total energy + Delta-G solvation = -2995.716083 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.88614 -40.74564 -39.48632 -36.16912 -34.05702 -31.73660 -31.26277 -30.40429 -28.38808 -25.14304 -23.82381 -23.29342 -22.56415 -20.62027 -19.13917 -18.46736 -17.36657 -17.21508 -16.94874 -16.63507 -16.37392 -16.00957 -15.84535 -14.96338 -14.79261 -14.58051 -14.07686 -13.85981 -13.66463 -13.35642 -13.21529 -12.91182 -12.50272 -12.28836 -12.19835 -11.96292 -11.77366 -11.66054 -11.26998 -11.08135 -10.77090 -10.69972 -9.69083 -9.37488 -8.35678 -6.37240 0.35884 0.49391 1.24452 1.28911 1.38751 2.25834 2.81605 3.00724 3.12506 3.49006 3.78852 3.86280 3.99610 4.13475 4.16496 4.29647 4.35799 4.45258 4.57844 4.58908 4.79135 4.83674 4.91400 4.95748 5.04552 5.09316 5.19932 5.29298 5.37185 5.41208 5.54702 5.60759 5.77356 5.91023 6.14496 6.25792 6.69114 7.27801 8.78800 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.015292 B = 0.012853 C = 0.009178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.526324 B = 2178.012506 C = 3050.083196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.032 3.968 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.243 1.243 7 C -0.490 4.490 8 H 0.052 0.948 9 C 0.049 3.951 10 H 0.035 0.965 11 C -0.090 4.090 12 C -0.094 4.094 13 C -0.124 4.124 14 C -0.107 4.107 15 C -0.159 4.159 16 C 0.038 3.962 17 F -0.158 7.158 18 C -0.092 4.092 19 H 0.076 0.924 20 C -0.145 4.145 21 C 0.043 3.957 22 O -0.397 6.397 23 C 0.062 3.938 24 H 0.265 0.735 25 H 0.125 0.875 26 H 0.155 0.845 27 H 0.165 0.835 28 H 0.147 0.853 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.114 0.886 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.520 -3.250 -5.097 14.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.167 4.167 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.167 1.167 7 C -0.528 4.528 8 H 0.071 0.929 9 C 0.030 3.970 10 H 0.054 0.946 11 C -0.092 4.092 12 C -0.112 4.112 13 C -0.142 4.142 14 C -0.125 4.125 15 C -0.178 4.178 16 C 0.019 3.981 17 F -0.137 7.137 18 C -0.111 4.111 19 H 0.095 0.905 20 C -0.183 4.183 21 C -0.034 4.034 22 O -0.316 6.316 23 C -0.015 4.015 24 H 0.074 0.926 25 H 0.143 0.857 26 H 0.173 0.827 27 H 0.182 0.818 28 H 0.165 0.835 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.132 0.868 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 13.365 -3.262 -4.875 14.595 hybrid contribution -0.404 1.539 0.184 1.602 sum 12.961 -1.723 -4.691 13.891 Atomic orbital electron populations 1.69991 1.07545 1.27684 1.52419 1.25566 0.95061 1.01598 0.94478 0.86433 0.79483 0.81051 0.79508 1.20267 1.22210 1.16719 1.21041 0.89803 0.93209 1.48745 0.92934 1.18303 0.94044 0.95095 0.89517 0.94644 1.20628 0.94676 0.94016 0.99862 1.20983 0.98536 0.98802 0.92848 1.21556 0.97155 0.99085 0.96413 1.21275 0.98307 0.93297 0.99626 1.21369 1.02648 1.02346 0.91404 1.18089 1.02368 0.90058 0.87541 1.91384 1.92799 1.65862 1.63631 1.22326 0.94940 0.97947 0.95864 0.90534 1.22994 0.95113 1.02831 0.97367 1.23551 0.89164 0.99190 0.91469 1.89023 1.16111 1.63924 1.62559 1.23288 0.89864 0.96789 0.91525 0.92615 0.85748 0.82708 0.81766 0.83516 0.89415 0.91497 0.86752 0.92707 0.93557 0.89434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.26 13.96 21.45 0.30 -56.96 16 2 C 0.03 1.81 5.47 84.65 0.46 2.27 16 3 Si 0.91 45.91 24.51 68.60 1.68 47.59 16 4 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 5 H -0.30 -14.88 7.11 99.48 0.71 -14.18 16 6 H -0.24 -11.81 5.22 99.48 0.52 -11.29 16 7 C -0.49 -26.20 8.15 25.60 0.21 -25.99 16 8 H 0.05 3.04 8.05 -2.91 -0.02 3.02 16 9 C 0.05 2.20 0.98 -12.29 -0.01 2.18 16 10 H 0.04 1.70 4.62 -2.39 -0.01 1.69 16 11 C -0.09 -3.65 3.03 -19.82 -0.06 -3.71 16 12 C -0.09 -3.30 8.89 22.26 0.20 -3.10 16 13 C -0.12 -3.41 10.04 22.27 0.22 -3.18 16 14 C -0.11 -2.72 10.04 22.26 0.22 -2.49 16 15 C -0.16 -4.86 10.03 22.31 0.22 -4.64 16 16 C 0.04 1.49 5.98 22.37 0.13 1.62 16 17 F -0.16 -6.59 13.40 44.97 0.60 -5.99 16 18 C -0.09 -3.48 2.38 -9.78 -0.02 -3.51 16 19 H 0.08 2.87 7.71 -2.39 -0.02 2.85 16 20 C -0.15 -4.52 6.26 31.61 0.20 -4.32 16 21 C 0.04 1.24 7.63 72.49 0.55 1.80 16 22 O -0.40 -14.12 11.65 -148.98 -1.74 -15.85 16 23 C 0.06 2.39 6.83 72.49 0.49 2.88 16 24 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 25 H 0.12 4.40 7.71 -2.91 -0.02 4.38 16 26 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 27 H 0.16 2.76 8.06 -2.91 -0.02 2.73 16 28 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 29 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.07 2.17 6.72 -2.39 -0.02 2.15 16 31 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.05 1.91 7.75 -2.39 -0.02 1.89 16 34 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 Total: -1.00 -64.74 276.28 4.58 -60.16 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.90 Total: 11.23 kcal Atomic # 6 Polarization: -43.01 SS G_CDS: 2.83 Total: -40.18 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: 0.30 Total: -56.96 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -1.74 Total: -15.85 kcal Atomic # 9 Polarization: -6.59 SS G_CDS: 0.60 Total: -5.99 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.68 Total: 47.59 kcal Total: -64.74 4.58 -60.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259725643.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.095 kcal (2) G-P(sol) polarization free energy of solvation -64.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds