Wall clock time and date at job start Mon Mar 30 2020 06:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99777 * 2 1 4 4 H 1.48493 * 109.47195 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46997 * 300.00021 * 3 2 1 6 6 H 1.48500 * 109.47074 * 60.00015 * 3 2 1 7 7 C 1.37873 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47240 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46997 * 180.02562 * 10 9 7 12 12 C 1.50706 * 109.46573 * 180.02562 * 11 10 9 13 13 O 1.20759 * 120.00113 * 359.72258 * 12 11 10 14 14 C 1.50700 * 119.99815 * 179.97438 * 12 11 10 15 15 C 1.50697 * 109.47266 * 179.97438 * 14 12 11 16 16 C 1.38237 * 119.97720 * 269.72745 * 15 14 12 17 17 C 1.38199 * 120.02802 * 179.72183 * 16 15 14 18 18 C 1.38462 * 119.96883 * 0.57441 * 17 16 15 19 19 F 1.35106 * 120.02213 * 179.67551 * 18 17 16 20 20 C 1.38454 * 119.94944 * 359.70218 * 18 17 16 21 21 C 1.38196 * 119.97550 * 359.97438 * 20 18 17 22 22 H 0.96992 * 120.00032 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47247 * 59.99954 * 9 7 2 24 24 H 1.08996 * 109.47258 * 300.00114 * 9 7 2 25 25 H 1.09000 * 109.46866 * 59.99931 * 10 9 7 26 26 H 1.09001 * 109.46611 * 300.00048 * 10 9 7 27 27 H 1.09000 * 109.47486 * 60.00167 * 11 10 9 28 28 H 1.09001 * 109.47362 * 299.99445 * 11 10 9 29 29 H 1.08997 * 109.47392 * 300.00326 * 14 12 11 30 30 H 1.09004 * 109.46932 * 59.99665 * 14 12 11 31 31 H 1.08004 * 119.98507 * 359.97438 * 16 15 14 32 32 H 1.07995 * 120.01776 * 180.25164 * 17 16 15 33 33 H 1.08003 * 120.01302 * 179.97438 * 20 18 17 34 34 H 1.08005 * 119.98395 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 -0.0001 12 6 2.4598 -6.1325 0.0005 13 8 3.6471 -5.9117 -0.0037 14 6 1.9576 -7.5533 0.0006 15 6 3.1297 -8.5005 0.0007 16 6 3.6633 -8.9391 -1.1967 17 6 4.7418 -9.8032 -1.1980 18 6 5.2803 -10.2389 0.0009 19 9 6.3306 -11.0889 0.0009 20 6 4.7414 -9.8034 1.1996 21 6 3.6672 -8.9341 1.1983 22 1 -0.4850 0.8400 0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6242 -2.5567 0.8902 25 1 2.8721 -3.6043 0.8905 26 1 2.8721 -3.6042 -0.8895 27 1 0.8541 -5.0446 -0.8903 28 1 0.8535 -5.0451 0.8897 29 1 1.3516 -7.7244 0.8904 30 1 1.3523 -7.7248 -0.8895 31 1 3.2397 -8.6032 -2.1317 32 1 5.1611 -10.1426 -2.1335 33 1 5.1604 -10.1430 2.1353 34 1 3.2464 -8.5946 2.1332 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259833734.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:07 Heat of formation + Delta-G solvation = -83.598609 kcal Electronic energy + Delta-G solvation = -16810.726356 eV Core-core repulsion = 13815.212272 eV Total energy + Delta-G solvation = -2995.514084 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.05104 -39.96421 -38.52373 -34.24492 -32.80264 -32.03354 -31.33259 -28.77123 -26.89587 -23.85152 -23.26544 -21.89767 -20.23744 -19.22130 -17.84275 -16.63221 -16.39942 -15.87875 -15.80081 -15.51905 -15.28742 -14.48497 -14.39336 -13.87113 -13.76655 -13.67823 -13.15072 -12.43010 -12.27229 -11.97723 -11.90695 -11.68997 -11.36220 -11.18173 -10.84082 -10.61593 -10.54671 -9.71418 -9.71110 -9.29328 -9.27534 -9.03349 -8.60675 -8.34449 -5.99762 -4.01387 0.93926 1.05094 2.20949 3.32081 3.34912 3.39517 3.45076 4.07946 4.28999 4.47756 4.48951 4.51719 4.69959 4.97346 5.05621 5.35409 5.36412 5.38698 5.46400 5.67748 5.71820 5.73880 5.89462 5.92089 6.02522 6.30581 6.31972 6.67330 6.70086 6.87767 7.11010 7.68199 7.78182 7.80883 8.00800 8.44621 9.06047 9.62903 11.11688 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.048744 B = 0.003249 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.285943 B = 8614.696420 C = 8868.153407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.102 4.102 11 C -0.169 4.169 12 C 0.353 3.647 13 O -0.445 6.445 14 C -0.137 4.137 15 C -0.078 4.078 16 C -0.081 4.081 17 C -0.151 4.151 18 C 0.091 3.909 19 F -0.143 7.143 20 C -0.152 4.152 21 C -0.081 4.081 22 H 0.259 0.741 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.705 -21.267 0.009 21.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.140 4.140 11 C -0.206 4.206 12 C 0.227 3.773 13 O -0.317 6.317 14 C -0.175 4.175 15 C -0.079 4.079 16 C -0.099 4.099 17 C -0.170 4.170 18 C 0.072 3.928 19 F -0.122 7.122 20 C -0.170 4.170 21 C -0.099 4.099 22 H 0.069 0.931 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.246 -21.063 0.006 21.486 hybrid contribution 0.490 0.778 0.000 0.919 sum 4.736 -20.285 0.006 20.830 Atomic orbital electron populations 1.69970 1.06032 1.26462 1.51244 1.25025 0.94861 0.99275 0.95369 0.86543 0.80225 0.83761 0.77553 1.19696 1.21018 1.21011 1.21318 0.93197 0.91073 1.50099 0.92590 1.19129 0.93949 0.91472 0.97143 1.21494 0.98777 0.92361 1.01362 1.22231 0.99091 0.95196 1.04074 1.24787 0.90452 0.91174 0.70843 1.90403 1.19294 1.87315 1.34681 1.21278 0.96925 0.93494 1.05763 1.19623 0.97586 0.97362 0.93287 1.20894 0.95113 0.95776 0.98101 1.21101 0.98330 1.00491 0.97099 1.17719 0.87279 0.93030 0.94807 1.91489 1.54898 1.68344 1.97464 1.21099 0.98401 1.00427 0.97101 1.20894 0.95144 0.95734 0.98106 0.93097 0.96601 0.96588 0.92927 0.92926 0.88844 0.88869 0.87396 0.87389 0.85038 0.84790 0.84790 0.85037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.10 -2.13 4.44 -26.73 -0.12 -2.25 16 11 C -0.17 -2.56 5.64 -27.88 -0.16 -2.72 16 12 C 0.35 4.90 7.15 -29.03 -0.21 4.70 16 13 O -0.44 -7.93 15.66 6.00 0.09 -7.84 16 14 C -0.14 -1.31 5.77 -29.04 -0.17 -1.47 16 15 C -0.08 -0.85 4.37 -104.62 -0.46 -1.30 16 16 C -0.08 -0.84 9.70 -39.60 -0.38 -1.23 16 17 C -0.15 -1.59 10.03 -39.51 -0.40 -1.98 16 18 C 0.09 1.03 7.30 -39.42 -0.29 0.74 16 19 F -0.14 -1.69 17.27 2.25 0.04 -1.65 16 20 C -0.15 -1.59 10.03 -39.52 -0.40 -1.98 16 21 C -0.08 -0.84 9.70 -39.59 -0.38 -1.23 16 22 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 23 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 1.14 8.10 -51.93 -0.42 0.72 16 26 H 0.05 1.14 8.10 -51.93 -0.42 0.72 16 27 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.11 0.79 8.09 -51.93 -0.42 0.37 16 30 H 0.11 0.79 8.08 -51.93 -0.42 0.37 16 31 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 32 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 33 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 34 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 LS Contribution 303.95 15.07 4.58 4.58 Total: -1.00 -32.91 303.95 -7.68 -40.59 By element: Atomic # 1 Polarization: 0.33 SS G_CDS: -4.60 Total: -4.28 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -3.51 Total: -22.08 kcal Atomic # 7 Polarization: -26.94 SS G_CDS: 0.74 Total: -26.21 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.09 Total: -7.84 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.91 -7.68 -40.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259833734.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.010 kcal (2) G-P(sol) polarization free energy of solvation -32.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds