Wall clock time and date at job start Mon Mar 30 2020 06:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99777 * 2 1 4 4 H 1.48493 * 109.47195 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46997 * 300.00021 * 3 2 1 6 6 H 1.48500 * 109.47074 * 60.00015 * 3 2 1 7 7 C 1.37873 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47240 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46997 * 180.02562 * 10 9 7 12 12 C 1.50706 * 109.46573 * 180.02562 * 11 10 9 13 13 O 1.20759 * 120.00113 * 359.72258 * 12 11 10 14 14 C 1.50700 * 119.99815 * 179.97438 * 12 11 10 15 15 C 1.50697 * 109.47266 * 179.97438 * 14 12 11 16 16 C 1.38237 * 119.97720 * 269.72745 * 15 14 12 17 17 C 1.38199 * 120.02802 * 179.72183 * 16 15 14 18 18 C 1.38462 * 119.96883 * 0.57441 * 17 16 15 19 19 F 1.35106 * 120.02213 * 179.67551 * 18 17 16 20 20 C 1.38454 * 119.94944 * 359.70218 * 18 17 16 21 21 C 1.38196 * 119.97550 * 359.97438 * 20 18 17 22 22 H 0.96992 * 120.00032 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47247 * 59.99954 * 9 7 2 24 24 H 1.08996 * 109.47258 * 300.00114 * 9 7 2 25 25 H 1.09000 * 109.46866 * 59.99931 * 10 9 7 26 26 H 1.09001 * 109.46611 * 300.00048 * 10 9 7 27 27 H 1.09000 * 109.47486 * 60.00167 * 11 10 9 28 28 H 1.09001 * 109.47362 * 299.99445 * 11 10 9 29 29 H 1.08997 * 109.47392 * 300.00326 * 14 12 11 30 30 H 1.09004 * 109.46932 * 59.99665 * 14 12 11 31 31 H 1.08004 * 119.98507 * 359.97438 * 16 15 14 32 32 H 1.07995 * 120.01776 * 180.25164 * 17 16 15 33 33 H 1.08003 * 120.01302 * 179.97438 * 20 18 17 34 34 H 1.08005 * 119.98395 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 -0.0001 12 6 2.4598 -6.1325 0.0005 13 8 3.6471 -5.9117 -0.0037 14 6 1.9576 -7.5533 0.0006 15 6 3.1297 -8.5005 0.0007 16 6 3.6633 -8.9391 -1.1967 17 6 4.7418 -9.8032 -1.1980 18 6 5.2803 -10.2389 0.0009 19 9 6.3306 -11.0889 0.0009 20 6 4.7414 -9.8034 1.1996 21 6 3.6672 -8.9341 1.1983 22 1 -0.4850 0.8400 0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6242 -2.5567 0.8902 25 1 2.8721 -3.6043 0.8905 26 1 2.8721 -3.6042 -0.8895 27 1 0.8541 -5.0446 -0.8903 28 1 0.8535 -5.0451 0.8897 29 1 1.3516 -7.7244 0.8904 30 1 1.3523 -7.7248 -0.8895 31 1 3.2397 -8.6032 -2.1317 32 1 5.1611 -10.1426 -2.1335 33 1 5.1604 -10.1430 2.1353 34 1 3.2464 -8.5946 2.1332 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259833734.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:07 Heat of formation + Delta-G solvation = -101.417894 kcal Electronic energy + Delta-G solvation = -16811.499058 eV Core-core repulsion = 13815.212272 eV Total energy + Delta-G solvation = -2996.286786 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.90944 -40.94639 -39.48115 -36.11916 -34.04472 -33.56874 -32.08432 -30.24407 -28.18266 -25.60952 -24.02482 -22.98949 -21.83794 -20.35920 -18.65134 -18.47904 -17.46209 -16.91081 -16.76340 -16.58747 -16.52713 -16.32521 -15.41505 -15.05316 -14.78278 -14.46705 -14.25396 -14.24198 -13.76562 -13.15186 -13.12301 -12.75547 -12.62655 -12.58560 -12.47616 -12.31879 -11.91591 -11.52388 -11.48287 -11.24709 -10.55180 -10.48001 -10.05405 -9.49134 -8.21045 -6.31089 0.13287 0.29103 1.14426 1.38493 1.39120 1.52532 2.40357 2.54490 3.11806 3.29049 3.31809 3.71698 3.76947 3.97413 4.20585 4.26025 4.34134 4.34451 4.52024 4.67193 4.75819 4.93162 4.97727 5.03520 5.14058 5.15683 5.18573 5.21494 5.26061 5.53903 5.54228 5.76563 5.87522 5.94001 6.27758 6.71257 6.85370 7.37858 8.90427 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.048744 B = 0.003249 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.285943 B = 8614.696420 C = 8868.153407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.548 4.548 8 H 0.049 0.951 9 C 0.025 3.975 10 C -0.092 4.092 11 C -0.166 4.166 12 C 0.363 3.637 13 O -0.492 6.492 14 C -0.125 4.125 15 C -0.091 4.091 16 C -0.090 4.090 17 C -0.159 4.159 18 C 0.070 3.930 19 F -0.151 7.151 20 C -0.159 4.159 21 C -0.090 4.090 22 H 0.265 0.735 23 H 0.000 1.000 24 H 0.001 0.999 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.218 -21.737 0.011 21.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.785 3.215 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.586 4.586 8 H 0.068 0.932 9 C -0.013 4.013 10 C -0.130 4.130 11 C -0.203 4.203 12 C 0.241 3.759 13 O -0.367 6.367 14 C -0.162 4.162 15 C -0.091 4.091 16 C -0.107 4.107 17 C -0.178 4.178 18 C 0.051 3.949 19 F -0.130 7.130 20 C -0.178 4.178 21 C -0.107 4.107 22 H 0.073 0.927 23 H 0.019 0.981 24 H 0.019 0.981 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.157 0.843 30 H 0.157 0.843 31 H 0.167 0.833 32 H 0.166 0.834 33 H 0.166 0.834 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.746 -21.549 0.008 21.872 hybrid contribution 0.619 0.929 0.000 1.116 sum 4.365 -20.620 0.007 21.077 Atomic orbital electron populations 1.70067 1.07457 1.27727 1.51671 1.25900 0.95825 1.03044 0.94731 0.85468 0.78875 0.79105 0.78036 1.19294 1.20066 1.20051 1.21748 0.93282 0.92992 1.50581 0.93231 1.19031 0.94268 0.92466 0.95487 1.21243 0.97759 0.94082 0.99908 1.22185 0.99255 0.92726 1.06120 1.25036 0.89195 0.92792 0.68917 1.90409 1.21014 1.88130 1.37182 1.21265 0.96854 0.89379 1.08694 1.19874 0.98124 0.97623 0.93492 1.21194 0.95020 0.95568 0.98956 1.21349 0.98457 1.00464 0.97517 1.18004 0.87616 0.93636 0.95670 1.91464 1.55303 1.68663 1.97539 1.21346 0.98521 1.00399 0.97519 1.21194 0.95053 0.95534 0.98963 0.92651 0.98116 0.98099 0.94383 0.94392 0.86824 0.86841 0.84336 0.84332 0.83311 0.83395 0.83392 0.83317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.98 13.29 21.45 0.28 -55.70 16 2 C 0.00 0.17 5.46 84.65 0.46 0.63 16 3 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.55 -32.00 9.11 25.60 0.23 -31.77 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16 9 C 0.02 1.27 4.97 29.85 0.15 1.42 16 10 C -0.09 -3.87 4.44 30.60 0.14 -3.73 16 11 C -0.17 -4.73 5.64 29.85 0.17 -4.56 16 12 C 0.36 9.30 7.15 29.10 0.21 9.51 16 13 O -0.49 -17.17 15.66 -1.45 -0.02 -17.20 16 14 C -0.13 -1.93 5.77 29.10 0.17 -1.76 16 15 C -0.09 -1.74 4.37 -19.86 -0.09 -1.83 16 16 C -0.09 -1.70 9.70 22.26 0.22 -1.48 16 17 C -0.16 -3.17 10.03 22.31 0.22 -2.95 16 18 C 0.07 1.54 7.30 22.37 0.16 1.70 16 19 F -0.15 -3.52 17.27 44.97 0.78 -2.75 16 20 C -0.16 -3.17 10.03 22.31 0.22 -2.94 16 21 C -0.09 -1.70 9.70 22.26 0.22 -1.48 16 22 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 23 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 24 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 25 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 26 H 0.04 1.66 8.10 -2.39 -0.02 1.65 16 27 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 28 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 29 H 0.14 1.36 8.09 -2.39 -0.02 1.34 16 30 H 0.14 1.36 8.08 -2.38 -0.02 1.34 16 31 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 32 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 33 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 34 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -72.00 303.95 6.62 -65.38 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: 1.08 Total: 2.56 kcal Atomic # 6 Polarization: -41.71 SS G_CDS: 2.48 Total: -39.24 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.28 Total: -55.70 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.02 Total: -17.20 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.78 Total: -2.75 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -72.00 6.62 -65.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259833734.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.039 kcal (2) G-P(sol) polarization free energy of solvation -72.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds