Wall clock time and date at job start Mon Mar 30 2020 06:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35957 * 117.00277 * 2 1 4 4 C 1.38668 * 120.05737 * 359.97438 * 3 2 1 5 5 C 1.38177 * 119.96517 * 179.97438 * 4 3 2 6 6 C 1.50704 * 119.95084 * 180.02562 * 5 4 3 7 7 C 1.38259 * 120.09960 * 359.97438 * 5 4 3 8 8 C 1.50700 * 119.93867 * 180.02562 * 7 5 4 9 9 C 1.50702 * 115.55149 * 294.33482 * 8 7 5 10 10 H 1.07998 * 119.99520 * 144.72826 * 9 8 7 11 11 C 1.37869 * 120.00127 * 324.72299 * 9 8 7 12 12 N 1.31521 * 120.00233 * 351.59688 * 11 9 8 13 13 Si 1.86804 * 120.00023 * 171.58790 * 11 9 8 14 14 H 1.48508 * 109.46818 * 60.00844 * 13 11 9 15 15 H 1.48501 * 109.47041 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47196 * 300.00877 * 13 11 9 17 17 C 1.53008 * 117.49757 * 148.66416 * 8 7 5 18 18 C 1.52998 * 117.49678 * 80.00565 * 8 7 5 19 19 C 1.38258 * 120.12605 * 0.02562 * 7 5 4 20 20 C 1.38337 * 120.02579 * 359.78347 * 19 7 5 21 21 F 1.35103 * 120.04155 * 180.23357 * 20 19 7 22 22 H 1.09000 * 109.47217 * 60.00402 * 1 2 3 23 23 H 1.09003 * 109.47536 * 300.00032 * 1 2 3 24 24 H 1.09004 * 109.47007 * 180.02562 * 1 2 3 25 25 H 1.07996 * 120.01725 * 0.02562 * 4 3 2 26 26 H 1.09003 * 109.47102 * 86.27538 * 6 5 4 27 27 H 1.09006 * 109.47055 * 206.27354 * 6 5 4 28 28 H 1.08999 * 109.47243 * 326.27205 * 6 5 4 29 29 H 0.96998 * 119.99926 * 185.01110 * 12 11 9 30 30 H 1.08994 * 117.49800 * 0.02562 * 17 8 7 31 31 H 1.08995 * 117.49591 * 145.02233 * 17 8 7 32 32 H 1.09003 * 117.50087 * 214.97478 * 18 8 7 33 33 H 1.09000 * 117.49908 * 359.97438 * 18 8 7 34 34 H 1.08002 * 119.98458 * 180.02562 * 19 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2922 2.3751 -0.0005 5 6 1.9215 3.6052 0.0000 6 6 1.1018 4.8698 0.0000 7 6 3.3022 3.6777 0.0016 8 6 3.9848 5.0212 0.0028 9 6 3.7812 5.8549 -1.2361 10 1 3.7020 6.9290 -1.1570 11 6 3.6962 5.2463 -2.4702 12 7 3.9562 3.9626 -2.5898 13 14 3.2114 6.2449 -3.9727 14 1 4.1951 7.3381 -4.1789 15 1 3.1924 5.3636 -5.1677 16 1 1.8609 6.8267 -3.7656 17 6 5.3375 5.1258 0.7102 18 6 4.0933 5.7573 1.3397 19 6 4.0579 2.5199 0.0021 20 6 3.4332 1.2856 0.0056 21 9 4.1713 0.1540 0.0109 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.2136 2.3201 -0.0005 26 1 0.8477 5.1381 1.0255 27 1 1.6776 5.6761 -0.4545 28 1 0.1872 4.7099 -0.5710 29 1 3.9676 3.5498 -3.4675 30 1 5.7338 4.2227 1.1743 31 1 6.0799 5.7978 0.2797 32 1 4.0178 6.8446 1.3232 33 1 3.6705 5.2700 2.2182 34 1 5.1363 2.5792 0.0038 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259874035.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:07 Heat of formation + Delta-G solvation = -37.512874 kcal Electronic energy + Delta-G solvation = -18758.263846 eV Core-core repulsion = 15764.748190 eV Total energy + Delta-G solvation = -2993.515657 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -47.94448 -39.44384 -37.81198 -35.22505 -32.23806 -31.44772 -29.13886 -27.38340 -25.68726 -25.47908 -22.23510 -21.41018 -20.63582 -19.24598 -17.39655 -16.79382 -16.11851 -15.53250 -15.23868 -14.69226 -14.38171 -14.03804 -13.84120 -13.43695 -13.33414 -12.73309 -12.49582 -12.06932 -11.65755 -11.44154 -11.25888 -11.09887 -10.99747 -10.70631 -10.60198 -10.39696 -10.30672 -10.05263 -9.53032 -9.19403 -8.86784 -8.32967 -7.84542 -7.08637 -6.04697 -4.15265 2.09671 2.27220 3.23796 3.31114 3.31962 3.70489 4.30508 4.52802 4.89298 5.09743 5.27999 5.39190 5.45250 5.59820 5.65004 5.73627 5.92563 6.08026 6.23780 6.36540 6.40315 6.44800 6.51790 6.60983 6.63172 6.85678 6.87950 7.00152 7.20965 7.26874 7.38397 7.54139 7.75834 7.77477 8.05906 8.27230 8.79311 9.42314 10.91961 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.020545 B = 0.008956 C = 0.008189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.512103 B = 3125.814593 C = 3418.355524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.321 6.321 3 C 0.064 3.936 4 C -0.190 4.190 5 C -0.047 4.047 6 C -0.119 4.119 7 C 0.035 3.965 8 C 0.086 3.914 9 C -0.496 4.496 10 H 0.065 0.935 11 C 0.077 3.923 12 N -0.860 5.860 13 Si 0.888 3.112 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.206 4.206 18 C -0.201 4.201 19 C -0.081 4.081 20 C 0.052 3.948 21 F -0.150 7.150 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.092 0.908 25 H 0.121 0.879 26 H 0.053 0.947 27 H 0.106 0.894 28 H 0.046 0.954 29 H 0.264 0.736 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.676 -2.728 4.798 7.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.235 6.235 3 C 0.019 3.981 4 C -0.209 4.209 5 C -0.047 4.047 6 C -0.176 4.176 7 C 0.034 3.966 8 C 0.085 3.915 9 C -0.533 4.533 10 H 0.083 0.917 11 C -0.129 4.129 12 N -0.494 5.494 13 Si 0.716 3.284 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.244 4.244 18 C -0.238 4.238 19 C -0.100 4.100 20 C 0.033 3.967 21 F -0.129 7.129 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.110 0.890 25 H 0.139 0.861 26 H 0.072 0.928 27 H 0.124 0.876 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.622 -3.147 4.647 7.943 hybrid contribution -0.264 0.263 -1.044 1.108 sum -5.886 -2.884 3.603 7.480 Atomic orbital electron populations 1.22911 0.79416 1.02918 1.01052 1.86035 1.20537 1.26923 1.90015 1.18695 0.90592 0.84722 1.04096 1.20738 0.98783 0.91417 1.09932 1.19395 0.93736 0.93815 0.97784 1.20945 0.98712 0.97268 1.00643 1.18727 0.91442 0.93547 0.92857 1.17661 0.93052 0.90176 0.90591 1.20330 1.51483 0.92382 0.89070 0.91679 1.24986 0.94298 0.94766 0.98851 1.69960 1.45494 1.10068 1.23914 0.86705 0.79437 0.80037 0.82247 1.20170 1.21225 1.19926 1.23091 0.93014 1.01438 1.06838 1.22931 1.04290 0.98759 0.97850 1.20618 1.00362 0.89375 0.99607 1.16897 0.85637 0.82617 1.11570 1.91390 1.76826 1.49777 1.94859 0.93024 0.93136 0.89006 0.86149 0.92821 0.87555 0.93532 0.92516 0.91427 0.90087 0.90235 0.91248 0.85356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.81 101.05 0.99 1.42 16 2 O -0.32 -6.02 10.36 -19.60 -0.20 -6.23 16 3 C 0.06 1.32 6.69 -39.18 -0.26 1.06 16 4 C -0.19 -3.73 8.70 -39.44 -0.34 -4.07 16 5 C -0.05 -1.00 5.85 -104.63 -0.61 -1.61 16 6 C -0.12 -2.28 9.63 36.01 0.35 -1.93 16 7 C 0.04 0.80 3.29 -104.61 -0.34 0.46 16 8 C 0.09 1.98 1.19 -156.81 -0.19 1.79 16 9 C -0.50 -12.42 6.87 -34.44 -0.24 -12.65 16 10 H 0.07 1.61 7.83 -52.49 -0.41 1.20 16 11 C 0.08 1.97 5.28 -17.82 -0.09 1.88 16 12 N -0.86 -23.06 11.16 55.43 0.62 -22.44 16 13 Si 0.89 20.07 29.55 -169.99 -5.02 15.04 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 17 C -0.21 -4.42 9.43 -26.69 -0.25 -4.67 16 18 C -0.20 -4.07 9.94 -26.69 -0.27 -4.34 16 19 C -0.08 -1.85 8.51 -39.54 -0.34 -2.19 16 20 C 0.05 1.17 7.31 -39.30 -0.29 0.88 16 21 F -0.15 -3.31 17.11 2.25 0.04 -3.27 16 22 H 0.05 0.66 7.66 -51.93 -0.40 0.26 16 23 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 24 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.12 1.99 6.30 -52.49 -0.33 1.66 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.11 2.26 5.17 -51.93 -0.27 1.99 16 28 H 0.05 0.80 8.11 -51.93 -0.42 0.38 16 29 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 30 H 0.07 1.38 7.14 -51.93 -0.37 1.00 16 31 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 32 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.13 2.91 7.02 -52.49 -0.37 2.55 16 LS Contribution 287.93 15.07 4.34 4.34 Total: -1.00 -27.63 287.93 -6.33 -33.96 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -4.21 Total: 2.56 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: -1.88 Total: -23.97 kcal Atomic # 7 Polarization: -23.06 SS G_CDS: 0.62 Total: -22.44 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -0.20 Total: -6.23 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.04 Total: -3.27 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.63 -6.33 -33.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259874035.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.553 kcal (2) G-P(sol) polarization free energy of solvation -27.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds