Wall clock time and date at job start Mon Mar 30 2020 06:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35957 * 117.00277 * 2 1 4 4 C 1.38668 * 120.05737 * 359.97438 * 3 2 1 5 5 C 1.38177 * 119.96517 * 179.97438 * 4 3 2 6 6 C 1.50704 * 119.95084 * 180.02562 * 5 4 3 7 7 C 1.38259 * 120.09960 * 359.97438 * 5 4 3 8 8 C 1.50700 * 119.93867 * 180.02562 * 7 5 4 9 9 C 1.50702 * 115.55149 * 294.33482 * 8 7 5 10 10 H 1.07998 * 119.99520 * 144.72826 * 9 8 7 11 11 C 1.37869 * 120.00127 * 324.72299 * 9 8 7 12 12 N 1.31521 * 120.00233 * 351.59688 * 11 9 8 13 13 Si 1.86804 * 120.00023 * 171.58790 * 11 9 8 14 14 H 1.48508 * 109.46818 * 60.00844 * 13 11 9 15 15 H 1.48501 * 109.47041 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47196 * 300.00877 * 13 11 9 17 17 C 1.53008 * 117.49757 * 148.66416 * 8 7 5 18 18 C 1.52998 * 117.49678 * 80.00565 * 8 7 5 19 19 C 1.38258 * 120.12605 * 0.02562 * 7 5 4 20 20 C 1.38337 * 120.02579 * 359.78347 * 19 7 5 21 21 F 1.35103 * 120.04155 * 180.23357 * 20 19 7 22 22 H 1.09000 * 109.47217 * 60.00402 * 1 2 3 23 23 H 1.09003 * 109.47536 * 300.00032 * 1 2 3 24 24 H 1.09004 * 109.47007 * 180.02562 * 1 2 3 25 25 H 1.07996 * 120.01725 * 0.02562 * 4 3 2 26 26 H 1.09003 * 109.47102 * 86.27538 * 6 5 4 27 27 H 1.09006 * 109.47055 * 206.27354 * 6 5 4 28 28 H 1.08999 * 109.47243 * 326.27205 * 6 5 4 29 29 H 0.96998 * 119.99926 * 185.01110 * 12 11 9 30 30 H 1.08994 * 117.49800 * 0.02562 * 17 8 7 31 31 H 1.08995 * 117.49591 * 145.02233 * 17 8 7 32 32 H 1.09003 * 117.50087 * 214.97478 * 18 8 7 33 33 H 1.09000 * 117.49908 * 359.97438 * 18 8 7 34 34 H 1.08002 * 119.98458 * 180.02562 * 19 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2922 2.3751 -0.0005 5 6 1.9215 3.6052 0.0000 6 6 1.1018 4.8698 0.0000 7 6 3.3022 3.6777 0.0016 8 6 3.9848 5.0212 0.0028 9 6 3.7812 5.8549 -1.2361 10 1 3.7020 6.9290 -1.1570 11 6 3.6962 5.2463 -2.4702 12 7 3.9562 3.9626 -2.5898 13 14 3.2114 6.2449 -3.9727 14 1 4.1951 7.3381 -4.1789 15 1 3.1924 5.3636 -5.1677 16 1 1.8609 6.8267 -3.7656 17 6 5.3375 5.1258 0.7102 18 6 4.0933 5.7573 1.3397 19 6 4.0579 2.5199 0.0021 20 6 3.4332 1.2856 0.0056 21 9 4.1713 0.1540 0.0109 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.2136 2.3201 -0.0005 26 1 0.8477 5.1381 1.0255 27 1 1.6776 5.6761 -0.4545 28 1 0.1872 4.7099 -0.5710 29 1 3.9676 3.5498 -3.4675 30 1 5.7338 4.2227 1.1743 31 1 6.0799 5.7978 0.2797 32 1 4.0178 6.8446 1.3232 33 1 3.6705 5.2700 2.2182 34 1 5.1363 2.5792 0.0038 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259874035.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:07 Heat of formation + Delta-G solvation = -51.147309 kcal Electronic energy + Delta-G solvation = -18758.855080 eV Core-core repulsion = 15764.748190 eV Total energy + Delta-G solvation = -2994.106890 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.64749 -40.97918 -39.35386 -36.85124 -34.13216 -33.04276 -30.69654 -28.63261 -27.54590 -27.00759 -23.84950 -23.02896 -22.26524 -20.97432 -19.03191 -18.42615 -17.66613 -16.98622 -16.94469 -16.54498 -15.90949 -15.69165 -15.33612 -15.08468 -14.88202 -14.28596 -14.05442 -13.74404 -13.15973 -12.88609 -12.80902 -12.75230 -12.68865 -12.33085 -12.26625 -12.03686 -11.88857 -11.60347 -11.27504 -10.99036 -10.60338 -10.14561 -9.47634 -8.73108 -7.93228 -6.10318 0.44775 0.65865 1.44897 1.47846 1.53092 2.37514 2.45039 2.88631 3.06243 3.48399 3.70309 3.98942 4.07414 4.27543 4.42198 4.44516 4.49645 4.59101 4.70021 4.76995 4.80494 4.92908 4.98722 5.00357 5.06055 5.20605 5.25399 5.37336 5.57199 5.58425 5.76220 5.79174 6.02226 6.12156 6.42043 6.54343 6.87264 7.48427 8.98035 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.020545 B = 0.008956 C = 0.008189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.512103 B = 3125.814593 C = 3418.355524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.338 6.338 3 C 0.067 3.933 4 C -0.185 4.185 5 C -0.057 4.057 6 C -0.115 4.115 7 C 0.018 3.982 8 C 0.060 3.940 9 C -0.498 4.498 10 H 0.062 0.938 11 C 0.038 3.962 12 N -0.886 5.886 13 Si 0.939 3.061 14 H -0.275 1.275 15 H -0.294 1.294 16 H -0.265 1.265 17 C -0.211 4.211 18 C -0.176 4.176 19 C -0.094 4.094 20 C 0.026 3.974 21 F -0.156 7.156 22 H 0.058 0.942 23 H 0.068 0.932 24 H 0.122 0.878 25 H 0.156 0.844 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.257 0.743 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.750 -2.390 5.359 9.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.253 6.253 3 C 0.022 3.978 4 C -0.203 4.203 5 C -0.057 4.057 6 C -0.172 4.172 7 C 0.017 3.983 8 C 0.060 3.940 9 C -0.535 4.535 10 H 0.080 0.920 11 C -0.165 4.165 12 N -0.522 5.522 13 Si 0.765 3.235 14 H -0.201 1.201 15 H -0.220 1.220 16 H -0.190 1.190 17 C -0.249 4.249 18 C -0.213 4.213 19 C -0.113 4.113 20 C 0.007 3.993 21 F -0.135 7.135 22 H 0.077 0.923 23 H 0.087 0.913 24 H 0.140 0.860 25 H 0.173 0.827 26 H 0.097 0.903 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.707 -2.795 5.220 9.719 hybrid contribution 0.338 0.128 -1.170 1.225 sum -7.369 -2.667 4.050 8.822 Atomic orbital electron populations 1.23330 0.76366 1.05484 1.02197 1.86024 1.23655 1.25968 1.89644 1.18780 0.90172 0.85979 1.02864 1.21051 1.00443 0.90290 1.08532 1.19757 0.93453 0.95386 0.97134 1.20915 0.98627 0.95338 1.02287 1.18785 0.92367 0.93094 0.94007 1.17740 0.94183 0.90890 0.91222 1.20554 1.50516 0.92443 0.90023 0.91982 1.25533 0.94581 0.95416 1.00960 1.70116 1.47239 1.11268 1.23594 0.85909 0.79460 0.78692 0.79429 1.20063 1.22027 1.18973 1.23067 0.92923 1.01816 1.07086 1.22939 1.02337 0.99147 0.96892 1.20572 0.99879 0.90109 1.00733 1.17120 0.86784 0.82322 1.13113 1.91357 1.77138 1.49935 1.95049 0.92335 0.91346 0.85966 0.82654 0.90344 0.89861 0.91695 0.93395 0.90934 0.90742 0.89300 0.89661 0.86703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.81 113.37 1.11 1.58 16 2 O -0.34 -12.05 10.36 -93.06 -0.96 -13.02 16 3 C 0.07 2.72 6.69 22.53 0.15 2.87 16 4 C -0.18 -6.82 8.70 22.36 0.19 -6.62 16 5 C -0.06 -2.32 5.85 -19.87 -0.12 -2.44 16 6 C -0.12 -4.10 9.63 71.24 0.69 -3.42 16 7 C 0.02 0.83 3.29 -19.85 -0.07 0.77 16 8 C 0.06 2.75 1.19 -53.67 -0.06 2.68 16 9 C -0.50 -24.80 6.87 25.60 0.18 -24.62 16 10 H 0.06 3.04 7.83 -2.91 -0.02 3.02 16 11 C 0.04 1.93 5.28 84.65 0.45 2.38 16 12 N -0.89 -48.14 11.16 21.45 0.24 -47.90 16 13 Si 0.94 41.02 29.55 68.60 2.03 43.05 16 14 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 15 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 16 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 17 C -0.21 -9.03 9.43 30.62 0.29 -8.74 16 18 C -0.18 -6.86 9.94 30.62 0.30 -6.56 16 19 C -0.09 -4.38 8.51 22.30 0.19 -4.19 16 20 C 0.03 1.18 7.31 22.45 0.16 1.34 16 21 F -0.16 -7.04 17.11 44.97 0.77 -6.27 16 22 H 0.06 1.28 7.66 -2.39 -0.02 1.26 16 23 H 0.07 1.35 7.66 -2.39 -0.02 1.33 16 24 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.16 4.50 6.30 -2.91 -0.02 4.49 16 26 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.08 3.39 5.17 -2.38 -0.01 3.38 16 28 H 0.06 2.03 8.11 -2.39 -0.02 2.01 16 29 H 0.26 13.83 8.32 -92.71 -0.77 13.05 16 30 H 0.07 2.98 7.14 -2.39 -0.02 2.97 16 31 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 32 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 33 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 34 H 0.11 5.46 7.02 -2.91 -0.02 5.44 16 Total: -1.00 -58.88 287.93 6.65 -52.23 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 1.11 Total: 16.88 kcal Atomic # 6 Polarization: -48.44 SS G_CDS: 3.47 Total: -44.97 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: 0.24 Total: -47.90 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -0.96 Total: -13.02 kcal Atomic # 9 Polarization: -7.04 SS G_CDS: 0.77 Total: -6.27 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -58.88 6.65 -52.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259874035.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.085 kcal (2) G-P(sol) polarization free energy of solvation -58.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds