Wall clock time and date at job start Mon Mar 30 2020 06:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 119.99635 * 2 1 4 4 H 1.48498 * 109.47088 * 92.41127 * 3 2 1 5 5 H 1.48508 * 109.46971 * 212.40617 * 3 2 1 6 6 H 1.48497 * 109.47349 * 332.41048 * 3 2 1 7 7 C 1.37872 * 120.00583 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99817 * 354.00095 * 7 2 1 9 9 C 1.50700 * 120.00458 * 174.00673 * 7 2 1 10 10 C 1.50696 * 115.54784 * 271.13974 * 9 7 2 11 11 C 1.38268 * 119.94173 * 123.33759 * 10 9 7 12 12 C 1.38155 * 120.05150 * 179.72616 * 11 10 9 13 13 C 1.38724 * 119.94383 * 0.54466 * 12 11 10 14 14 O 1.35905 * 120.05747 * 179.75167 * 13 12 11 15 15 C 1.42902 * 116.99372 * 359.97438 * 14 13 12 16 16 C 1.53007 * 109.46862 * 180.02562 * 15 14 13 17 17 F 1.39899 * 109.47096 * 65.00152 * 16 15 14 18 18 C 1.38735 * 119.89330 * 359.72899 * 13 12 11 19 19 C 1.38149 * 119.93960 * 359.97438 * 18 13 12 20 20 C 1.52995 * 117.49860 * 125.43145 * 9 7 2 21 21 C 1.52999 * 60.00239 * 252.50889 * 20 9 7 22 22 H 0.97001 * 120.00470 * 359.97438 * 1 2 3 23 23 H 1.07997 * 119.97504 * 0.02562 * 11 10 9 24 24 H 1.08006 * 120.02397 * 180.27391 * 12 11 10 25 25 H 1.08991 * 109.47565 * 299.99845 * 15 14 13 26 26 H 1.08996 * 109.46953 * 60.00806 * 15 14 13 27 27 H 1.08991 * 109.47275 * 185.00423 * 16 15 14 28 28 H 1.09000 * 109.46852 * 305.00454 * 16 15 14 29 29 H 1.08001 * 120.03348 * 179.97438 * 18 13 12 30 30 H 1.07995 * 119.96861 * 180.02562 * 19 18 13 31 31 H 1.08997 * 117.50512 * 359.97438 * 20 9 7 32 32 H 1.09001 * 117.50002 * 145.02102 * 20 9 7 33 33 H 1.08999 * 117.50167 * 252.51221 * 21 20 9 34 34 H 1.08997 * 117.49603 * 107.48445 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5475 2.0171 1.3988 5 1 3.5202 1.4555 -0.7504 6 1 1.4219 2.6669 -0.6484 7 6 2.0046 -1.1939 -0.0005 8 1 1.4691 -2.1268 0.0968 9 6 3.5054 -1.1974 -0.1368 10 6 4.0296 -1.2423 -1.5489 11 6 4.8865 -0.2547 -1.9987 12 6 5.3729 -0.2966 -3.2910 13 6 4.9921 -1.3246 -4.1412 14 8 5.4653 -1.3654 -5.4146 15 6 6.3511 -0.3165 -5.8113 16 6 6.7749 -0.5298 -7.2659 17 9 5.6583 -0.4065 -8.0998 18 6 4.1278 -2.3112 -3.6893 19 6 3.6490 -2.2681 -2.3942 20 6 4.3108 -1.9275 0.9398 21 6 4.3099 -0.3983 0.8904 22 1 -0.4851 0.8400 0.0004 23 1 5.1795 0.5475 -1.3376 24 1 6.0457 0.4726 -3.6405 25 1 5.8427 0.6431 -5.7184 26 1 7.2330 -0.3240 -5.1708 27 1 7.5183 0.2182 -7.5412 28 1 7.2032 -1.5259 -7.3772 29 1 3.8295 -3.1123 -4.3494 30 1 2.9765 -3.0361 -2.0418 31 1 3.7553 -2.4050 1.7469 32 1 5.2201 -2.4406 0.6269 33 1 5.2186 0.0947 0.5449 34 1 3.7536 0.1299 1.6647 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259890285.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:47 Heat of formation + Delta-G solvation = -40.109776 kcal Electronic energy + Delta-G solvation = -17820.444874 eV Core-core repulsion = 14826.816608 eV Total energy + Delta-G solvation = -2993.628267 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -47.76644 -39.80307 -37.97336 -35.62052 -32.12470 -31.23845 -30.35806 -28.69204 -25.75727 -23.90521 -22.61076 -21.73409 -21.01210 -19.15052 -18.12738 -16.77945 -16.68652 -15.92252 -15.69840 -15.05044 -14.88984 -14.61994 -14.51454 -13.96161 -13.25483 -12.84612 -12.74680 -12.58204 -12.29287 -11.84912 -11.42389 -11.25726 -11.15512 -11.04823 -10.65805 -10.46023 -10.31719 -10.07781 -9.57998 -9.29634 -8.69758 -8.50351 -8.38231 -7.40103 -6.13198 -4.16668 1.91491 2.02962 3.22185 3.29536 3.40077 3.44151 4.31353 4.36778 4.43723 4.54039 4.69901 4.88829 4.91129 5.14139 5.18506 5.33822 5.39988 5.56835 5.62368 5.89113 6.03315 6.04407 6.12750 6.26203 6.43495 6.49760 6.63129 6.70690 6.79804 7.06313 7.16838 7.31310 7.46185 7.71451 7.78639 8.45965 8.88375 9.50048 10.97899 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.028392 B = 0.005785 C = 0.005545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.970527 B = 4839.280061 C = 5047.984161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.081 3.919 3 Si 0.876 3.124 4 H -0.280 1.280 5 H -0.248 1.248 6 H -0.298 1.298 7 C -0.486 4.486 8 H 0.080 0.920 9 C 0.036 3.964 10 C -0.045 4.045 11 C -0.092 4.092 12 C -0.211 4.211 13 C 0.098 3.902 14 O -0.316 6.316 15 C 0.026 3.974 16 C 0.068 3.932 17 F -0.211 7.211 18 C -0.151 4.151 19 C -0.060 4.060 20 C -0.172 4.172 21 C -0.204 4.204 22 H 0.265 0.735 23 H 0.121 0.879 24 H 0.116 0.884 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.123 0.877 30 H 0.131 0.869 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.656 -0.213 -9.172 17.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.122 4.122 3 Si 0.704 3.296 4 H -0.206 1.206 5 H -0.172 1.172 6 H -0.225 1.225 7 C -0.523 4.523 8 H 0.098 0.902 9 C 0.035 3.965 10 C -0.045 4.045 11 C -0.110 4.110 12 C -0.230 4.230 13 C 0.055 3.945 14 O -0.231 6.231 15 C -0.050 4.050 16 C 0.014 3.986 17 F -0.193 7.193 18 C -0.170 4.170 19 C -0.078 4.078 20 C -0.210 4.210 21 C -0.241 4.241 22 H 0.075 0.925 23 H 0.138 0.862 24 H 0.134 0.866 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.111 0.889 28 H 0.102 0.898 29 H 0.141 0.859 30 H 0.149 0.851 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 14.415 -0.235 -9.344 17.180 hybrid contribution 0.367 1.346 0.119 1.400 sum 14.782 1.111 -9.226 17.460 Atomic orbital electron populations 1.69894 1.06438 1.27276 1.49450 1.24971 0.94564 0.99176 0.93536 0.86925 0.81075 0.83158 0.78439 1.20631 1.17193 1.22501 1.20199 0.86424 0.94744 1.50908 0.90221 1.18179 0.94025 1.00092 0.84238 1.19755 0.94170 0.93525 0.97070 1.20969 0.96817 0.98481 0.94735 1.21035 1.06173 1.00031 0.95747 1.18831 0.96643 0.96172 0.82893 1.86027 1.61541 1.47816 1.27732 1.23340 0.94392 0.91750 0.95543 1.22040 0.85780 1.04289 0.86532 1.92806 1.55555 1.97614 1.73293 1.20365 1.00439 0.99457 0.96751 1.20803 0.97221 0.98282 0.91485 1.22873 1.01267 0.93656 1.03159 1.23012 1.01922 0.94243 1.04881 0.92492 0.86164 0.86626 0.91083 0.90561 0.88894 0.89756 0.85910 0.85103 0.89303 0.90883 0.90699 0.89355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.04 13.96 55.43 0.77 -26.26 16 2 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 3 Si 0.88 21.47 24.91 -169.99 -4.23 17.24 16 4 H -0.28 -6.71 7.04 56.52 0.40 -6.32 16 5 H -0.25 -5.64 4.31 56.52 0.24 -5.39 16 6 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 7 C -0.49 -13.27 9.21 -34.44 -0.32 -13.59 16 8 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 9 C 0.04 0.81 1.11 -156.81 -0.17 0.64 16 10 C -0.04 -0.95 5.14 -104.60 -0.54 -1.48 16 11 C -0.09 -1.79 8.24 -39.60 -0.33 -2.11 16 12 C -0.21 -3.61 9.04 -39.43 -0.36 -3.97 16 13 C 0.10 1.71 6.69 -39.22 -0.26 1.45 16 14 O -0.32 -4.91 10.13 -19.44 -0.20 -5.11 16 15 C 0.03 0.29 5.20 37.16 0.19 0.48 16 16 C 0.07 0.60 7.93 37.16 0.29 0.89 16 17 F -0.21 -2.69 17.35 2.25 0.04 -2.65 16 18 C -0.15 -2.74 9.99 -39.43 -0.39 -3.13 16 19 C -0.06 -1.20 9.48 -39.60 -0.38 -1.57 16 20 C -0.17 -3.44 9.94 -26.73 -0.27 -3.71 16 21 C -0.20 -4.24 6.78 -26.73 -0.18 -4.42 16 22 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 23 H 0.12 2.26 5.44 -52.49 -0.29 1.97 16 24 H 0.12 1.62 6.30 -52.48 -0.33 1.29 16 25 H 0.07 0.79 7.66 -51.93 -0.40 0.39 16 26 H 0.08 0.68 7.66 -51.93 -0.40 0.29 16 27 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.12 1.97 8.06 -52.49 -0.42 1.54 16 30 H 0.13 2.57 8.06 -52.49 -0.42 2.15 16 31 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.07 1.40 6.67 -51.93 -0.35 1.06 16 34 H 0.09 1.93 6.57 -51.93 -0.34 1.59 16 LS Contribution 284.36 15.07 4.29 4.29 Total: -1.00 -31.17 284.36 -6.49 -37.66 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -4.36 Total: 3.15 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: -2.80 Total: -28.33 kcal Atomic # 7 Polarization: -27.04 SS G_CDS: 0.77 Total: -26.26 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.20 Total: -5.11 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.04 Total: -2.65 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.23 Total: 17.24 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.17 -6.49 -37.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259890285.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.445 kcal (2) G-P(sol) polarization free energy of solvation -31.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds