Wall clock time and date at job start Mon Mar 30 2020 06:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 119.99635 * 2 1 4 4 H 1.48498 * 109.47088 * 92.41127 * 3 2 1 5 5 H 1.48508 * 109.46971 * 212.40617 * 3 2 1 6 6 H 1.48497 * 109.47349 * 332.41048 * 3 2 1 7 7 C 1.37872 * 120.00583 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99817 * 354.00095 * 7 2 1 9 9 C 1.50700 * 120.00458 * 174.00673 * 7 2 1 10 10 C 1.50696 * 115.54784 * 271.13974 * 9 7 2 11 11 C 1.38268 * 119.94173 * 123.33759 * 10 9 7 12 12 C 1.38155 * 120.05150 * 179.72616 * 11 10 9 13 13 C 1.38724 * 119.94383 * 0.54466 * 12 11 10 14 14 O 1.35905 * 120.05747 * 179.75167 * 13 12 11 15 15 C 1.42902 * 116.99372 * 359.97438 * 14 13 12 16 16 C 1.53007 * 109.46862 * 180.02562 * 15 14 13 17 17 F 1.39899 * 109.47096 * 65.00152 * 16 15 14 18 18 C 1.38735 * 119.89330 * 359.72899 * 13 12 11 19 19 C 1.38149 * 119.93960 * 359.97438 * 18 13 12 20 20 C 1.52995 * 117.49860 * 125.43145 * 9 7 2 21 21 C 1.52999 * 60.00239 * 252.50889 * 20 9 7 22 22 H 0.97001 * 120.00470 * 359.97438 * 1 2 3 23 23 H 1.07997 * 119.97504 * 0.02562 * 11 10 9 24 24 H 1.08006 * 120.02397 * 180.27391 * 12 11 10 25 25 H 1.08991 * 109.47565 * 299.99845 * 15 14 13 26 26 H 1.08996 * 109.46953 * 60.00806 * 15 14 13 27 27 H 1.08991 * 109.47275 * 185.00423 * 16 15 14 28 28 H 1.09000 * 109.46852 * 305.00454 * 16 15 14 29 29 H 1.08001 * 120.03348 * 179.97438 * 18 13 12 30 30 H 1.07995 * 119.96861 * 180.02562 * 19 18 13 31 31 H 1.08997 * 117.50512 * 359.97438 * 20 9 7 32 32 H 1.09001 * 117.50002 * 145.02102 * 20 9 7 33 33 H 1.08999 * 117.50167 * 252.51221 * 21 20 9 34 34 H 1.08997 * 117.49603 * 107.48445 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5475 2.0171 1.3988 5 1 3.5202 1.4555 -0.7504 6 1 1.4219 2.6669 -0.6484 7 6 2.0046 -1.1939 -0.0005 8 1 1.4691 -2.1268 0.0968 9 6 3.5054 -1.1974 -0.1368 10 6 4.0296 -1.2423 -1.5489 11 6 4.8865 -0.2547 -1.9987 12 6 5.3729 -0.2966 -3.2910 13 6 4.9921 -1.3246 -4.1412 14 8 5.4653 -1.3654 -5.4146 15 6 6.3511 -0.3165 -5.8113 16 6 6.7749 -0.5298 -7.2659 17 9 5.6583 -0.4065 -8.0998 18 6 4.1278 -2.3112 -3.6893 19 6 3.6490 -2.2681 -2.3942 20 6 4.3108 -1.9275 0.9398 21 6 4.3099 -0.3983 0.8904 22 1 -0.4851 0.8400 0.0004 23 1 5.1795 0.5475 -1.3376 24 1 6.0457 0.4726 -3.6405 25 1 5.8427 0.6431 -5.7184 26 1 7.2330 -0.3240 -5.1708 27 1 7.5183 0.2182 -7.5412 28 1 7.2032 -1.5259 -7.3772 29 1 3.8295 -3.1123 -4.3494 30 1 2.9765 -3.0361 -2.0418 31 1 3.7553 -2.4050 1.7469 32 1 5.2201 -2.4406 0.6269 33 1 5.2186 0.0947 0.5449 34 1 3.7536 0.1299 1.6647 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259890285.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:47 Heat of formation + Delta-G solvation = -58.797264 kcal Electronic energy + Delta-G solvation = -17821.255225 eV Core-core repulsion = 14826.816608 eV Total energy + Delta-G solvation = -2994.438617 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.58260 -41.11827 -39.40927 -37.12014 -34.24574 -32.26828 -31.66322 -30.00892 -27.80300 -24.92229 -24.13134 -23.13448 -22.39660 -20.87015 -19.31852 -18.58150 -17.58714 -17.15448 -16.84293 -16.56891 -16.13775 -15.89361 -15.79099 -15.28921 -14.85276 -14.72386 -14.29871 -13.87496 -13.57289 -13.37121 -13.08357 -12.83162 -12.23302 -12.17249 -12.02792 -11.93137 -11.90340 -11.55094 -11.45867 -11.06500 -10.65519 -10.31493 -9.83342 -8.83525 -8.29821 -6.36953 0.48814 0.59551 1.35832 1.40134 1.52566 2.19553 2.39396 2.86016 3.06638 3.29488 3.59901 3.86339 3.97047 4.01247 4.06331 4.08997 4.28810 4.34367 4.41526 4.46112 4.57514 4.70718 4.81058 4.85182 4.88512 4.96924 5.12317 5.19224 5.39129 5.46806 5.56578 5.74185 5.89772 5.96983 6.31198 6.50182 6.71065 7.33210 8.85049 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.028392 B = 0.005785 C = 0.005545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.970527 B = 4839.280061 C = 5047.984161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.021 3.979 3 Si 0.934 3.066 4 H -0.269 1.269 5 H -0.216 1.216 6 H -0.308 1.308 7 C -0.483 4.483 8 H 0.033 0.967 9 C 0.010 3.990 10 C -0.069 4.069 11 C -0.098 4.098 12 C -0.203 4.203 13 C 0.105 3.895 14 O -0.329 6.329 15 C 0.012 3.988 16 C 0.064 3.936 17 F -0.237 7.237 18 C -0.159 4.159 19 C -0.078 4.078 20 C -0.159 4.159 21 C -0.193 4.193 22 H 0.264 0.736 23 H 0.132 0.868 24 H 0.154 0.846 25 H 0.072 0.928 26 H 0.105 0.895 27 H 0.135 0.865 28 H 0.097 0.903 29 H 0.136 0.864 30 H 0.116 0.884 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.424 1.282 -10.414 21.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.194 1.194 5 H -0.138 1.138 6 H -0.236 1.236 7 C -0.520 4.520 8 H 0.051 0.949 9 C 0.009 3.991 10 C -0.070 4.070 11 C -0.116 4.116 12 C -0.221 4.221 13 C 0.060 3.940 14 O -0.244 6.244 15 C -0.063 4.063 16 C 0.010 3.990 17 F -0.219 7.219 18 C -0.177 4.177 19 C -0.096 4.096 20 C -0.196 4.196 21 C -0.230 4.230 22 H 0.073 0.927 23 H 0.149 0.851 24 H 0.171 0.829 25 H 0.090 0.910 26 H 0.123 0.877 27 H 0.153 0.847 28 H 0.115 0.885 29 H 0.153 0.847 30 H 0.134 0.866 31 H 0.099 0.901 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 18.222 1.239 -10.590 21.112 hybrid contribution -0.768 0.747 0.408 1.147 sum 17.453 1.987 -10.181 20.304 Atomic orbital electron populations 1.70054 1.08465 1.28035 1.52288 1.25854 0.95209 1.03113 0.93500 0.86006 0.80827 0.78023 0.79266 1.19447 1.13788 1.23627 1.20382 0.89382 0.92836 1.49440 0.94889 1.18019 0.91465 1.03357 0.86281 1.19616 0.96225 0.95085 0.96039 1.21099 0.96639 0.97973 0.95905 1.21356 1.05782 1.00412 0.94570 1.18908 0.95698 0.95560 0.83829 1.86035 1.62295 1.49679 1.26414 1.23789 0.94588 0.90489 0.97431 1.22395 0.85416 1.06599 0.84634 1.92757 1.57241 1.97808 1.74068 1.20502 1.00638 1.00417 0.96161 1.20777 0.97845 0.98375 0.92617 1.22902 1.01448 0.93757 1.01495 1.23052 1.02138 0.94659 1.03108 0.92701 0.85053 0.82893 0.90994 0.87695 0.84717 0.88519 0.84656 0.86620 0.90051 0.88163 0.87610 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.03 13.96 21.44 0.30 -59.73 16 2 C 0.02 1.21 5.47 84.65 0.46 1.67 16 3 Si 0.93 44.07 24.91 68.60 1.71 45.78 16 4 H -0.27 -12.12 7.04 99.48 0.70 -11.42 16 5 H -0.22 -8.93 4.31 99.48 0.43 -8.50 16 6 H -0.31 -14.99 7.11 99.48 0.71 -14.28 16 7 C -0.48 -27.40 9.21 25.60 0.24 -27.16 16 8 H 0.03 2.10 8.06 -2.91 -0.02 2.07 16 9 C 0.01 0.43 1.11 -53.68 -0.06 0.37 16 10 C -0.07 -2.85 5.14 -19.85 -0.10 -2.95 16 11 C -0.10 -3.48 8.24 22.26 0.18 -3.29 16 12 C -0.20 -6.10 9.04 22.37 0.20 -5.90 16 13 C 0.10 3.35 6.69 22.50 0.15 3.50 16 14 O -0.33 -9.17 10.13 -92.48 -0.94 -10.11 16 15 C 0.01 0.22 5.20 71.98 0.37 0.59 16 16 C 0.06 0.86 7.93 71.98 0.57 1.43 16 17 F -0.24 -5.46 17.35 44.97 0.78 -4.68 16 18 C -0.16 -5.57 9.99 22.37 0.22 -5.35 16 19 C -0.08 -3.13 9.48 22.25 0.21 -2.92 16 20 C -0.16 -6.13 9.94 30.59 0.30 -5.82 16 21 C -0.19 -7.53 6.78 30.59 0.21 -7.32 16 22 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 23 H 0.13 4.29 5.44 -2.91 -0.02 4.27 16 24 H 0.15 3.39 6.30 -2.91 -0.02 3.37 16 25 H 0.07 1.29 7.66 -2.39 -0.02 1.27 16 26 H 0.11 1.29 7.66 -2.39 -0.02 1.28 16 27 H 0.14 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 30 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 31 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 32 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 33 H 0.11 3.48 6.67 -2.39 -0.02 3.46 16 34 H 0.08 3.17 6.57 -2.39 -0.02 3.15 16 Total: -1.00 -70.55 284.36 5.63 -64.92 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.81 Total: 16.97 kcal Atomic # 6 Polarization: -56.11 SS G_CDS: 2.96 Total: -53.15 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: 0.30 Total: -59.73 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -0.94 Total: -10.11 kcal Atomic # 9 Polarization: -5.46 SS G_CDS: 0.78 Total: -4.68 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.71 Total: 45.78 kcal Total: -70.55 5.63 -64.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259890285.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.122 kcal (2) G-P(sol) polarization free energy of solvation -70.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds