Wall clock time and date at job start Mon Mar 30 2020 05:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00226 * 2 1 4 4 H 1.48491 * 109.47464 * 240.00375 * 3 2 1 5 5 H 1.48504 * 109.46805 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46965 * 120.00093 * 3 2 1 7 7 C 1.37883 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99941 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99671 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46918 * 180.02562 * 9 7 2 11 11 H 1.09007 * 110.36361 * 304.28489 * 10 9 7 12 12 C 1.54452 * 110.31993 * 182.11418 * 10 9 7 13 13 O 1.44835 * 102.89649 * 219.30181 * 12 10 9 14 14 C 1.44383 * 103.23431 * 36.61393 * 13 12 10 15 15 H 1.08998 * 110.11638 * 79.95303 * 14 13 12 16 16 C 1.50702 * 110.11602 * 201.60168 * 14 13 12 17 17 C 1.38162 * 120.02830 * 101.73874 * 16 14 13 18 18 C 1.38254 * 120.05321 * 179.97438 * 17 16 14 19 19 C 1.38280 * 120.11086 * 0.02562 * 18 17 16 20 20 C 1.38119 * 120.05814 * 359.97438 * 19 18 17 21 21 C 1.38717 * 120.02572 * 281.46572 * 16 14 13 22 22 O 1.35896 * 120.05332 * 359.97438 * 21 16 14 23 23 O 1.43785 * 106.16983 * 320.77603 * 14 13 12 24 24 H 0.97003 * 119.99653 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47376 * 60.00188 * 9 7 2 26 26 H 1.08998 * 109.47104 * 300.00076 * 9 7 2 27 27 H 1.09001 * 110.72834 * 100.94938 * 12 10 9 28 28 H 1.08999 * 110.88358 * 337.72693 * 12 10 9 29 29 H 1.07999 * 119.97631 * 359.97438 * 17 16 14 30 30 H 1.08000 * 119.93954 * 180.02562 * 18 17 16 31 31 H 1.08004 * 119.96946 * 180.02562 * 19 18 17 32 32 H 1.08003 * 120.03094 * 180.02562 * 20 19 18 33 33 H 0.96704 * 113.99755 * 90.00504 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9293 -3.5763 -0.8449 12 6 1.4936 -5.0103 -0.0540 13 8 2.2651 -5.8463 0.8425 14 6 2.6602 -4.9327 1.8884 15 1 1.8382 -4.7872 2.5893 16 6 3.8707 -5.4648 2.6114 17 6 5.1230 -4.9515 2.3337 18 6 6.2338 -5.4389 2.9970 19 6 6.0946 -6.4413 3.9393 20 6 4.8449 -6.9578 4.2205 21 6 3.7278 -6.4665 3.5603 22 8 2.4963 -6.9687 3.8396 23 8 2.9796 -3.6916 1.2365 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5570 0.8897 27 1 1.5030 -5.4174 -1.0650 28 1 0.4708 -4.8995 0.3062 29 1 5.2343 -4.1688 1.5978 30 1 7.2117 -5.0360 2.7788 31 1 6.9639 -6.8200 4.4564 32 1 4.7367 -7.7404 4.9569 33 1 2.2466 -7.7253 3.2914 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259898109.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:20 Heat of formation + Delta-G solvation = -133.192092 kcal Electronic energy + Delta-G solvation = -18122.844658 eV Core-core repulsion = 15112.807250 eV Total energy + Delta-G solvation = -3010.037408 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.67474 -40.30368 -37.60525 -36.21261 -35.23212 -33.44034 -31.68910 -30.78951 -28.59161 -26.20517 -25.04055 -23.55436 -22.58797 -22.14643 -19.45982 -18.53955 -18.26933 -17.85696 -17.04281 -16.67343 -16.52502 -16.19373 -15.94945 -15.19541 -14.99595 -14.62604 -14.27703 -13.98505 -13.64506 -13.29730 -13.26279 -13.13866 -12.96446 -12.56098 -12.47005 -12.39013 -11.85882 -11.56009 -11.22095 -11.16633 -10.60503 -10.56599 -9.91879 -9.61897 -8.22417 -6.31278 0.16165 0.33108 1.38334 1.41633 1.49433 2.39626 2.47193 2.79178 2.86880 3.12715 3.28518 3.69094 3.83120 3.93618 4.00203 4.11762 4.17858 4.36923 4.48686 4.58781 4.59981 4.71425 4.83759 5.00408 5.03832 5.28658 5.37098 5.45248 5.52662 5.54396 5.72892 5.88723 6.06076 6.22454 6.76637 6.80283 7.36258 8.89294 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.028336 B = 0.005648 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.895763 B = 4955.961097 C = 5527.944898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.274 1.274 7 C -0.532 4.532 8 H 0.054 0.946 9 C 0.020 3.980 10 C 0.062 3.938 11 H 0.087 0.913 12 C 0.024 3.976 13 O -0.378 6.378 14 C 0.274 3.726 15 H 0.067 0.933 16 C -0.148 4.148 17 C -0.087 4.087 18 C -0.135 4.135 19 C -0.088 4.088 20 C -0.151 4.151 21 C 0.117 3.883 22 O -0.508 6.508 23 O -0.385 6.385 24 H 0.264 0.736 25 H 0.023 0.977 26 H -0.006 1.006 27 H 0.134 0.866 28 H 0.075 0.925 29 H 0.119 0.881 30 H 0.152 0.848 31 H 0.166 0.834 32 H 0.156 0.844 33 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.205 -15.468 5.318 19.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.199 1.199 7 C -0.569 4.569 8 H 0.072 0.928 9 C -0.017 4.017 10 C 0.005 3.995 11 H 0.105 0.895 12 C -0.052 4.052 13 O -0.299 6.299 14 C 0.179 3.821 15 H 0.084 0.916 16 C -0.148 4.148 17 C -0.105 4.105 18 C -0.152 4.152 19 C -0.106 4.106 20 C -0.169 4.169 21 C 0.072 3.928 22 O -0.321 6.321 23 O -0.306 6.306 24 H 0.073 0.927 25 H 0.041 0.959 26 H 0.013 0.987 27 H 0.152 0.848 28 H 0.094 0.906 29 H 0.137 0.863 30 H 0.170 0.830 31 H 0.183 0.817 32 H 0.174 0.826 33 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 10.215 -14.995 5.788 19.044 hybrid contribution -0.465 0.907 -0.500 1.136 sum 9.749 -14.088 5.288 17.930 Atomic orbital electron populations 1.70059 1.07558 1.27876 1.51721 1.25892 0.95777 1.03103 0.94783 0.85540 0.78350 0.78357 0.79047 1.18865 1.20534 1.19942 1.21422 0.93239 0.91975 1.50313 0.92774 1.19308 0.93666 0.92687 0.96084 1.23688 0.93849 0.95741 0.86269 0.89473 1.24467 0.95469 0.88599 0.96687 1.89331 1.71094 1.32998 1.36504 1.22642 0.93447 0.77423 0.88610 0.91607 1.20093 0.94497 1.01096 0.99163 1.21087 0.91638 0.98727 0.99077 1.21509 0.98903 0.97769 0.97049 1.21525 0.97806 0.94994 0.96259 1.21671 0.91406 1.02192 1.01649 1.18421 0.85730 0.94394 0.94274 1.84722 1.31073 1.52849 1.63406 1.88943 1.68692 1.37776 1.35214 0.92690 0.95924 0.98742 0.84828 0.90632 0.86261 0.83017 0.81656 0.82597 0.73279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 2 C 0.00 0.13 5.46 84.66 0.46 0.59 16 3 Si 0.96 45.31 29.54 68.60 2.03 47.34 16 4 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.53 -30.95 8.94 25.60 0.23 -30.72 16 8 H 0.05 3.12 7.74 -2.91 -0.02 3.10 16 9 C 0.02 1.04 4.61 29.85 0.14 1.18 16 10 C 0.06 2.65 3.68 31.09 0.11 2.76 16 11 H 0.09 3.61 8.14 -2.38 -0.02 3.59 16 12 C 0.02 0.82 7.36 72.48 0.53 1.35 16 13 O -0.38 -13.36 11.50 -125.98 -1.45 -14.81 16 14 C 0.27 10.51 3.74 71.24 0.27 10.78 16 15 H 0.07 2.68 7.98 -2.39 -0.02 2.66 16 16 C -0.15 -4.93 5.54 -19.77 -0.11 -5.04 16 17 C -0.09 -2.69 9.38 22.26 0.21 -2.48 16 18 C -0.13 -3.03 10.04 22.28 0.22 -2.81 16 19 C -0.09 -1.63 10.04 22.25 0.22 -1.41 16 20 C -0.15 -3.18 9.99 22.36 0.22 -2.96 16 21 C 0.12 3.24 6.68 22.51 0.15 3.39 16 22 O -0.51 -13.16 12.82 -92.38 -1.18 -14.34 16 23 O -0.38 -17.33 9.42 -125.98 -1.19 -18.51 16 24 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 25 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 26 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 27 H 0.13 3.66 8.14 -2.39 -0.02 3.64 16 28 H 0.08 2.58 7.87 -2.39 -0.02 2.56 16 29 H 0.12 4.04 7.16 -2.91 -0.02 4.02 16 30 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 31 H 0.17 1.75 8.06 -2.91 -0.02 1.72 16 32 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 33 H 0.41 7.10 9.06 -74.05 -0.67 6.42 16 Total: -1.00 -71.15 288.20 1.60 -69.55 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.45 Total: 12.68 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: 2.66 Total: -25.35 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.28 Total: -56.55 kcal Atomic # 8 Polarization: -43.84 SS G_CDS: -3.82 Total: -47.66 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -71.15 1.60 -69.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259898109.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.644 kcal (2) G-P(sol) polarization free energy of solvation -71.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds