Wall clock time and date at job start Mon Mar 30 2020 05:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 120.00020 * 2 1 4 4 H 1.48502 * 109.47084 * 270.00404 * 3 2 1 5 5 H 1.48501 * 109.46980 * 29.99710 * 3 2 1 6 6 H 1.48504 * 109.47285 * 149.99829 * 3 2 1 7 7 C 1.37879 * 120.00237 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00125 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99854 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47135 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.36564 * 55.71948 * 10 9 7 12 12 C 1.54452 * 110.31928 * 177.88943 * 10 9 7 13 13 O 1.44900 * 102.93655 * 140.65522 * 12 10 9 14 14 C 1.44392 * 103.20076 * 323.47099 * 13 12 10 15 15 H 1.08996 * 110.11136 * 279.92908 * 14 13 12 16 16 C 1.50703 * 110.10813 * 158.35130 * 14 13 12 17 17 C 1.38166 * 120.02629 * 257.31392 * 16 14 13 18 18 C 1.38244 * 120.05849 * 179.70977 * 17 16 14 19 19 C 1.38288 * 120.10735 * 0.54781 * 18 17 16 20 20 C 1.38126 * 120.05387 * 359.44975 * 19 18 17 21 21 C 1.38707 * 120.03198 * 77.29990 * 16 14 13 22 22 O 1.35900 * 120.05163 * 359.97438 * 21 16 14 23 23 O 1.43780 * 106.22745 * 39.13945 * 14 13 12 24 24 H 0.97000 * 120.00100 * 0.02562 * 1 2 3 25 25 H 1.09008 * 109.46735 * 60.00223 * 9 7 2 26 26 H 1.08997 * 109.47175 * 300.00443 * 9 7 2 27 27 H 1.08994 * 110.72721 * 259.04833 * 12 10 9 28 28 H 1.08997 * 110.72843 * 22.17049 * 12 10 9 29 29 H 1.08007 * 119.97101 * 0.02562 * 17 16 14 30 30 H 1.07993 * 119.94966 * 180.29953 * 18 17 16 31 31 H 1.08002 * 119.97455 * 179.73146 * 19 18 17 32 32 H 1.07999 * 120.02655 * 180.25493 * 20 19 18 33 33 H 0.96701 * 114.00536 * 270.02444 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 1 2.9299 -3.5760 0.8452 12 6 1.4937 -5.0103 0.0560 13 8 2.2637 -5.8475 -0.8417 14 6 2.6590 -4.9334 -1.8873 15 1 1.8373 -4.7881 -2.5885 16 6 3.8689 -5.4659 -2.6109 17 6 5.1191 -4.9400 -2.3474 18 6 6.2303 -5.4321 -3.0064 19 6 6.0922 -6.4438 -3.9389 20 6 4.8446 -6.9730 -4.2059 21 6 3.7286 -6.4846 -3.5417 22 8 2.5001 -7.0042 -3.8020 23 8 2.9788 -3.6921 -1.2361 24 1 -0.4850 0.8400 -0.0004 25 1 0.6240 -2.5575 -0.8881 26 1 0.6247 -2.5563 0.8919 27 1 1.5039 -5.4170 1.0671 28 1 0.4706 -4.8964 -0.3023 29 1 5.2290 -4.1472 -1.6222 30 1 7.2073 -5.0230 -2.7955 31 1 6.9612 -6.8237 -4.4557 32 1 4.7378 -7.7660 -4.9312 33 1 2.2626 -7.7537 -3.2391 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259898111.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:22 Heat of formation + Delta-G solvation = -110.544349 kcal Electronic energy + Delta-G solvation = -18122.679514 eV Core-core repulsion = 15113.624186 eV Total energy + Delta-G solvation = -3009.055328 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.32105 -39.09165 -36.59612 -34.58347 -33.28067 -31.93136 -30.18822 -29.68754 -26.80273 -24.83545 -23.18115 -22.47938 -21.32784 -20.49132 -18.38066 -16.96217 -16.58945 -16.27983 -15.69498 -15.28361 -15.13145 -14.86783 -14.44803 -13.88546 -13.56138 -13.20244 -12.89273 -12.30801 -12.09127 -11.96693 -11.84722 -11.51776 -11.47520 -11.15116 -10.58486 -10.53961 -10.43873 -9.89210 -9.73832 -9.14801 -8.94658 -8.77448 -8.59145 -8.39405 -6.01864 -4.02769 1.19582 1.34832 3.33672 3.39469 3.43163 3.56562 4.14788 4.20258 4.30914 4.46374 4.92928 5.02459 5.17602 5.24782 5.35194 5.39253 5.50876 5.52276 5.66313 5.78907 5.87186 6.03708 6.12328 6.32367 6.37405 6.51906 6.54165 6.75847 6.84768 7.31180 7.56816 7.65514 7.75245 7.95490 8.36350 9.01459 9.60563 11.09864 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.028413 B = 0.005649 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.216955 B = 4955.626891 C = 5535.297198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.509 4.509 8 H 0.059 0.941 9 C 0.014 3.986 10 C 0.060 3.940 11 H 0.081 0.919 12 C 0.016 3.984 13 O -0.384 6.384 14 C 0.273 3.727 15 H 0.083 0.917 16 C -0.116 4.116 17 C -0.065 4.065 18 C -0.136 4.136 19 C -0.101 4.101 20 C -0.155 4.155 21 C 0.126 3.874 22 O -0.497 6.497 23 O -0.362 6.362 24 H 0.261 0.739 25 H 0.024 0.976 26 H 0.032 0.968 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.140 0.860 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.247 -14.390 -4.605 17.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.548 4.548 8 H 0.077 0.923 9 C -0.023 4.023 10 C 0.003 3.997 11 H 0.099 0.901 12 C -0.060 4.060 13 O -0.305 6.305 14 C 0.178 3.822 15 H 0.100 0.900 16 C -0.116 4.116 17 C -0.083 4.083 18 C -0.155 4.155 19 C -0.119 4.119 20 C -0.174 4.174 21 C 0.082 3.918 22 O -0.307 6.307 23 O -0.283 6.283 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.050 0.950 27 H 0.117 0.883 28 H 0.093 0.907 29 H 0.157 0.843 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 8.253 -13.901 -5.086 16.948 hybrid contribution 0.146 0.642 0.336 0.739 sum 8.399 -13.259 -4.751 16.399 Atomic orbital electron populations 1.69947 1.06056 1.26706 1.51087 1.24998 0.94855 0.99319 0.95336 0.86548 0.79785 0.83258 0.78151 1.20650 1.21289 1.19848 1.21087 0.93184 0.90360 1.50135 0.92308 1.19467 0.93305 0.91473 0.98099 1.23868 0.94374 0.95428 0.85985 0.90061 1.24474 0.96187 0.90479 0.94883 1.89342 1.71195 1.33300 1.36692 1.22666 0.92476 0.78129 0.88926 0.89968 1.20098 0.95117 0.98823 0.97606 1.21096 0.90726 0.98386 0.98116 1.21203 0.98884 0.97758 0.97607 1.21050 0.96793 0.96498 0.97596 1.21315 0.92003 1.02022 1.02015 1.18232 0.84707 0.94325 0.94567 1.84761 1.31338 1.52285 1.62335 1.88971 1.68737 1.35734 1.34831 0.92969 0.95751 0.94999 0.88251 0.90688 0.84256 0.85605 0.85724 0.85422 0.75118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.45 8.94 -34.44 -0.31 -14.75 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 9 C 0.01 0.34 4.60 -27.88 -0.13 0.22 16 10 C 0.06 1.26 3.68 -25.97 -0.10 1.17 16 11 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 12 C 0.02 0.28 7.36 37.92 0.28 0.56 16 13 O -0.38 -6.78 11.51 -59.28 -0.68 -7.46 16 14 C 0.27 5.09 3.73 36.01 0.13 5.22 16 15 H 0.08 1.58 8.01 -51.93 -0.42 1.17 16 16 C -0.12 -1.91 5.54 -104.47 -0.58 -2.49 16 17 C -0.07 -1.01 9.38 -39.61 -0.37 -1.38 16 18 C -0.14 -1.70 10.04 -39.56 -0.40 -2.09 16 19 C -0.10 -1.13 10.04 -39.60 -0.40 -1.53 16 20 C -0.16 -1.88 9.99 -39.43 -0.39 -2.27 16 21 C 0.13 1.83 6.68 -39.22 -0.26 1.57 16 22 O -0.50 -6.64 12.84 -19.42 -0.25 -6.89 16 23 O -0.36 -7.82 9.41 -59.28 -0.56 -8.38 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.02 0.66 8.14 -51.92 -0.42 0.24 16 26 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 28 H 0.07 1.26 7.86 -51.93 -0.41 0.86 16 29 H 0.14 2.26 7.15 -52.48 -0.38 1.89 16 30 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 31 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 33 H 0.39 3.62 9.06 45.56 0.41 4.03 16 LS Contribution 288.22 15.07 4.34 4.34 Total: -1.00 -32.32 288.22 -7.33 -39.65 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -3.29 Total: 2.24 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -2.62 Total: -14.29 kcal Atomic # 7 Polarization: -26.86 SS G_CDS: 0.74 Total: -26.12 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -1.49 Total: -22.73 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.32 -7.33 -39.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259898111.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.891 kcal (2) G-P(sol) polarization free energy of solvation -32.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds