Wall clock time and date at job start Mon Mar 30 2020 05:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00023 * 2 1 4 4 H 1.48507 * 109.47167 * 240.00229 * 3 2 1 5 5 H 1.48500 * 109.47112 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47438 * 120.00158 * 3 2 1 7 7 C 1.37871 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00058 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00206 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47563 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.31056 * 55.72609 * 10 9 7 12 12 C 1.54171 * 110.44011 * 177.97791 * 10 9 7 13 13 O 1.44293 * 104.94121 * 118.90935 * 12 10 9 14 14 C 1.44396 * 104.60979 * 23.64155 * 13 12 10 15 15 H 1.08997 * 110.40510 * 79.45296 * 14 13 12 16 16 C 1.50697 * 110.40145 * 201.86977 * 14 13 12 17 17 C 1.38175 * 120.02849 * 100.22301 * 16 14 13 18 18 C 1.38240 * 120.05372 * 179.97438 * 17 16 14 19 19 C 1.38283 * 120.11397 * 0.02562 * 18 17 16 20 20 C 1.38119 * 120.05777 * 0.02562 * 19 18 17 21 21 C 1.38707 * 120.02878 * 279.94408 * 16 14 13 22 22 O 1.35897 * 120.05693 * 0.02562 * 21 16 14 23 23 O 1.44295 * 110.34475 * 293.54985 * 10 9 7 24 24 H 0.96999 * 119.99465 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46994 * 60.00138 * 9 7 2 26 26 H 1.09001 * 109.47305 * 300.00376 * 9 7 2 27 27 H 1.09000 * 110.34408 * 237.77862 * 12 10 9 28 28 H 1.09003 * 110.34561 * 359.93412 * 12 10 9 29 29 H 1.08000 * 119.96847 * 359.97438 * 17 16 14 30 30 H 1.08004 * 119.94041 * 180.02562 * 18 17 16 31 31 H 1.08003 * 119.97273 * 179.97438 * 19 18 17 32 32 H 1.08003 * 120.03153 * 179.97438 * 20 19 18 33 33 H 0.96701 * 114.00212 * 89.99624 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9286 -3.5756 0.8442 12 6 1.4977 -5.0095 0.0504 13 8 1.8737 -5.6898 -1.1652 14 6 3.1360 -5.0967 -1.5390 15 1 3.9464 -5.5238 -0.9483 16 6 3.3951 -5.2961 -3.0101 17 6 3.1517 -4.2680 -3.9006 18 6 3.3897 -4.4502 -5.2501 19 6 3.8711 -5.6613 -5.7124 20 6 4.1151 -6.6925 -4.8265 21 6 3.8835 -6.5099 -3.4706 22 8 4.1286 -7.5209 -2.5961 23 8 2.9821 -3.6922 -1.2408 24 1 -0.4849 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 1.8135 -5.5854 0.9203 28 1 0.4205 -4.8445 0.0767 29 1 2.7753 -3.3214 -3.5420 30 1 3.1992 -3.6453 -5.9446 31 1 4.0559 -5.8013 -6.7673 32 1 4.4907 -7.6383 -5.1880 33 1 3.3727 -8.1058 -2.4492 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259898114.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:23 Heat of formation + Delta-G solvation = -133.438847 kcal Electronic energy + Delta-G solvation = -18158.362313 eV Core-core repulsion = 15148.314205 eV Total energy + Delta-G solvation = -3010.048108 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.63677 -40.31002 -37.59722 -36.16970 -35.25999 -33.45029 -31.73010 -30.78673 -28.59285 -26.17909 -25.07108 -23.60262 -22.50065 -22.14918 -19.30027 -18.80966 -17.86847 -17.79109 -17.23375 -16.63918 -16.62587 -16.29328 -16.02064 -15.36203 -14.87713 -14.47484 -14.40070 -13.85580 -13.60791 -13.42817 -13.15080 -13.04348 -12.98303 -12.56540 -12.51470 -12.36183 -11.92713 -11.51460 -11.32143 -10.90587 -10.72883 -10.60095 -9.94021 -9.63247 -8.22414 -6.31759 0.14954 0.32007 1.38239 1.41322 1.49347 2.39409 2.47477 2.79040 2.88945 3.12592 3.28520 3.72312 3.77180 3.91773 3.98345 4.09660 4.16671 4.41819 4.48216 4.54365 4.58566 4.83123 4.85396 5.00690 5.04207 5.30029 5.36180 5.41362 5.50899 5.55231 5.73412 5.87336 6.01649 6.21408 6.76492 6.79628 7.35888 8.89258 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.027395 B = 0.005893 C = 0.005171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.847188 B = 4750.460172 C = 5413.844860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.962 3.038 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.533 4.533 8 H 0.053 0.947 9 C 0.030 3.970 10 C 0.056 3.944 11 H 0.082 0.918 12 C 0.025 3.975 13 O -0.387 6.387 14 C 0.268 3.732 15 H 0.089 0.911 16 C -0.145 4.145 17 C -0.090 4.090 18 C -0.138 4.138 19 C -0.086 4.086 20 C -0.149 4.149 21 C 0.122 3.878 22 O -0.504 6.504 23 O -0.382 6.382 24 H 0.265 0.735 25 H -0.006 1.006 26 H 0.024 0.976 27 H 0.103 0.897 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.146 0.854 31 H 0.166 0.834 32 H 0.160 0.840 33 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.899 -14.481 -8.184 18.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.787 3.213 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.571 4.571 8 H 0.072 0.928 9 C -0.007 4.007 10 C -0.001 4.001 11 H 0.100 0.900 12 C -0.051 4.051 13 O -0.309 6.309 14 C 0.173 3.827 15 H 0.106 0.894 16 C -0.146 4.146 17 C -0.108 4.108 18 C -0.156 4.156 19 C -0.104 4.104 20 C -0.167 4.167 21 C 0.077 3.923 22 O -0.317 6.317 23 O -0.303 6.303 24 H 0.073 0.927 25 H 0.013 0.987 26 H 0.042 0.958 27 H 0.121 0.879 28 H 0.114 0.886 29 H 0.127 0.873 30 H 0.163 0.837 31 H 0.184 0.816 32 H 0.178 0.822 33 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 7.262 -14.118 -8.371 17.948 hybrid contribution -0.415 0.981 0.550 1.199 sum 6.847 -13.137 -7.822 16.752 Atomic orbital electron populations 1.70062 1.07561 1.27903 1.51606 1.25879 0.95762 1.03066 0.94727 0.85541 0.78345 0.78362 0.79049 1.19882 1.20465 1.18961 1.21423 0.93193 0.91997 1.50491 0.92832 1.19133 0.93359 0.92113 0.96059 1.23739 0.93753 0.96301 0.86304 0.90021 1.24222 1.01708 0.91313 0.87877 1.89152 1.38647 1.60517 1.42542 1.22971 0.87484 0.79170 0.93060 0.89395 1.19972 1.04421 0.96611 0.93556 1.21070 0.97343 0.98345 0.94078 1.21475 1.00327 0.99357 0.94395 1.21512 0.95964 0.91548 1.01382 1.21686 1.02362 1.01773 0.90919 1.18323 0.97264 0.87103 0.89565 1.84696 1.42219 1.41240 1.63504 1.89344 1.75283 1.24009 1.41667 0.92651 0.98739 0.95818 0.87915 0.88630 0.87321 0.83656 0.81624 0.82221 0.73164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.96 45.25 29.54 68.60 2.03 47.28 16 4 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.53 -31.10 8.94 25.60 0.23 -30.87 16 8 H 0.05 3.10 7.74 -2.91 -0.02 3.07 16 9 C 0.03 1.62 4.53 29.85 0.14 1.76 16 10 C 0.06 2.42 3.50 30.99 0.11 2.53 16 11 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 12 C 0.03 0.88 7.56 72.38 0.55 1.42 16 13 O -0.39 -14.12 11.46 -125.85 -1.44 -15.56 16 14 C 0.27 9.89 3.67 71.24 0.26 10.15 16 15 H 0.09 3.02 7.97 -2.39 -0.02 3.00 16 16 C -0.14 -4.90 5.55 -19.77 -0.11 -5.01 16 17 C -0.09 -3.08 9.39 22.26 0.21 -2.87 16 18 C -0.14 -3.51 10.04 22.28 0.22 -3.29 16 19 C -0.09 -1.71 10.04 22.25 0.22 -1.49 16 20 C -0.15 -3.14 9.99 22.37 0.22 -2.91 16 21 C 0.12 3.31 6.68 22.51 0.15 3.46 16 22 O -0.50 -11.89 12.81 -92.39 -1.18 -13.07 16 23 O -0.38 -17.26 9.66 -125.85 -1.22 -18.47 16 24 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 25 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 26 H 0.02 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 28 H 0.10 3.34 7.72 -2.39 -0.02 3.33 16 29 H 0.11 4.39 7.18 -2.91 -0.02 4.37 16 30 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 31 H 0.17 1.96 8.06 -2.91 -0.02 1.93 16 32 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 33 H 0.41 6.36 9.06 -74.06 -0.67 5.69 16 Total: -1.00 -71.36 288.13 1.58 -69.77 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 0.45 Total: 13.02 kcal Atomic # 6 Polarization: -29.12 SS G_CDS: 2.66 Total: -26.45 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.28 Total: -56.51 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -3.84 Total: -47.11 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -71.36 1.58 -69.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259898114.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.665 kcal (2) G-P(sol) polarization free energy of solvation -71.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds