Wall clock time and date at job start Mon Mar 30 2020 05:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99863 * 2 1 4 4 H 1.48500 * 109.47073 * 240.00079 * 3 2 1 5 5 H 1.48492 * 109.47468 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47049 * 120.00341 * 3 2 1 7 7 C 1.37871 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00143 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00087 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47213 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.64513 * 303.29114 * 10 9 7 12 12 C 1.54451 * 110.87920 * 180.02562 * 10 9 7 13 13 O 1.43978 * 105.09344 * 219.72444 * 12 10 9 14 14 C 1.43782 * 107.05940 * 358.38007 * 13 12 10 15 15 H 1.09005 * 110.11179 * 265.79599 * 14 13 12 16 16 C 1.50696 * 110.11549 * 144.21267 * 14 13 12 17 17 C 1.38165 * 120.02666 * 257.29250 * 16 14 13 18 18 C 1.38245 * 120.05645 * 180.02562 * 17 16 14 19 19 C 1.38290 * 120.10982 * 359.97438 * 18 17 16 20 20 C 1.38126 * 120.05768 * 0.02562 * 19 18 17 21 21 C 1.38714 * 120.03000 * 77.31665 * 16 14 13 22 22 O 1.35901 * 120.05102 * 0.02562 * 21 16 14 23 23 O 1.44393 * 106.22336 * 25.00298 * 14 13 12 24 24 H 0.97000 * 119.99671 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47009 * 60.00625 * 9 7 2 26 26 H 1.08997 * 109.47595 * 300.00596 * 9 7 2 27 27 H 1.09002 * 110.32374 * 338.68663 * 12 10 9 28 28 H 1.08999 * 110.31931 * 100.77888 * 12 10 9 29 29 H 1.07997 * 119.97398 * 0.02562 * 17 16 14 30 30 H 1.07995 * 119.94685 * 179.70646 * 18 17 16 31 31 H 1.08005 * 119.97140 * 179.97438 * 19 18 17 32 32 H 1.07998 * 120.03128 * 180.02562 * 20 19 18 33 33 H 0.96697 * 114.00182 * 90.00072 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9206 -3.5904 -0.8531 12 6 1.5061 -5.0182 -0.0012 13 8 2.2652 -5.8594 0.8872 14 6 3.3858 -5.0846 1.3469 15 1 4.2558 -5.2744 0.7183 16 6 3.6988 -5.4262 2.7809 17 6 3.3135 -4.5709 3.7953 18 6 3.6007 -4.8834 5.1109 19 6 4.2737 -6.0526 5.4153 20 6 4.6610 -6.9109 4.4048 21 6 4.3743 -6.5993 3.0835 22 8 4.7552 -7.4416 2.0874 23 8 2.9895 -3.7001 1.2413 24 1 -0.4850 0.8401 -0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 0.4887 -4.8950 0.3700 28 1 1.4932 -5.4418 -1.0054 29 1 2.7874 -3.6575 3.5602 30 1 3.3029 -4.2113 5.9021 31 1 4.4973 -6.2943 6.4439 32 1 5.1862 -7.8241 4.6430 33 1 5.6361 -7.2587 1.7329 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259898116.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:25 Heat of formation + Delta-G solvation = -109.987349 kcal Electronic energy + Delta-G solvation = -18116.038259 eV Core-core repulsion = 15107.007084 eV Total energy + Delta-G solvation = -3009.031175 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.29600 -39.07793 -36.60471 -34.54651 -33.33180 -31.93603 -30.21461 -29.67721 -26.80913 -24.81465 -23.17879 -22.47811 -21.30229 -20.46688 -18.33895 -17.01842 -16.54452 -16.02702 -15.87876 -15.53025 -14.95255 -14.64031 -14.52076 -14.20876 -13.65027 -13.13248 -12.67280 -12.29441 -12.12214 -11.97868 -11.73482 -11.57629 -11.37496 -11.18591 -10.60811 -10.57680 -10.46100 -9.84828 -9.37963 -9.26395 -9.12369 -8.85624 -8.59285 -8.41752 -6.04462 -4.06165 1.21841 1.37192 3.32699 3.36826 3.39981 3.60160 4.14681 4.20076 4.29154 4.43405 4.94373 5.05222 5.17976 5.27157 5.31858 5.33582 5.50873 5.57967 5.65778 5.81374 5.88531 6.06483 6.21817 6.33811 6.36721 6.53491 6.57577 6.75858 6.88068 7.32348 7.50410 7.63661 7.72784 7.91984 8.31463 8.97468 9.57277 11.07011 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.028133 B = 0.005681 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.017228 B = 4927.924651 C = 5487.243785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.028 3.972 10 C 0.057 3.943 11 H 0.071 0.929 12 C 0.019 3.981 13 O -0.381 6.381 14 C 0.272 3.728 15 H 0.072 0.928 16 C -0.117 4.117 17 C -0.064 4.064 18 C -0.135 4.135 19 C -0.101 4.101 20 C -0.156 4.156 21 C 0.125 3.875 22 O -0.493 6.493 23 O -0.352 6.352 24 H 0.262 0.738 25 H 0.036 0.964 26 H 0.029 0.971 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.143 0.857 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.819 -11.901 6.347 16.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.076 0.924 9 C -0.009 4.009 10 C 0.000 4.000 11 H 0.089 0.911 12 C -0.058 4.058 13 O -0.302 6.302 14 C 0.177 3.823 15 H 0.089 0.911 16 C -0.118 4.118 17 C -0.082 4.082 18 C -0.153 4.153 19 C -0.119 4.119 20 C -0.175 4.175 21 C 0.081 3.919 22 O -0.302 6.302 23 O -0.272 6.272 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.161 0.839 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 8.111 -12.064 6.640 15.982 hybrid contribution 0.917 1.121 -0.310 1.481 sum 9.028 -10.943 6.331 15.535 Atomic orbital electron populations 1.69940 1.06040 1.26896 1.50720 1.24987 0.94855 0.99294 0.95236 0.86602 0.79530 0.82889 0.78670 1.20241 1.21289 1.20193 1.21048 0.93132 0.90387 1.50684 0.92386 1.19206 0.92815 0.90340 0.98492 1.24146 0.93868 0.96159 0.85859 0.91069 1.24201 0.96993 0.90729 0.93844 1.88926 1.39465 1.37658 1.64164 1.22522 0.90154 0.78720 0.90940 0.91070 1.20075 1.01815 0.94875 0.95029 1.21178 0.96196 0.99404 0.91435 1.21230 0.99970 0.97534 0.96589 1.21059 0.97758 0.94199 0.98869 1.21303 1.03353 1.00821 0.91989 1.18220 0.97436 0.88669 0.87609 1.84871 1.38425 1.54709 1.52229 1.89564 1.72301 1.23192 1.42190 0.92838 0.94574 0.95232 0.89911 0.90608 0.83915 0.85516 0.85720 0.85459 0.75775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.51 13.29 55.43 0.74 -25.78 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -14.40 8.95 -34.44 -0.31 -14.71 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 9 C 0.03 0.72 4.65 -27.88 -0.13 0.59 16 10 C 0.06 1.19 3.35 -25.97 -0.09 1.10 16 11 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 12 C 0.02 0.35 7.66 37.92 0.29 0.64 16 13 O -0.38 -7.37 11.25 -59.28 -0.67 -8.04 16 14 C 0.27 4.97 3.73 36.00 0.13 5.10 16 15 H 0.07 1.17 8.01 -51.93 -0.42 0.75 16 16 C -0.12 -1.96 5.54 -104.47 -0.58 -2.53 16 17 C -0.06 -1.04 9.38 -39.61 -0.37 -1.41 16 18 C -0.14 -1.77 10.04 -39.56 -0.40 -2.17 16 19 C -0.10 -1.16 10.04 -39.60 -0.40 -1.56 16 20 C -0.16 -1.90 9.99 -39.43 -0.39 -2.30 16 21 C 0.13 1.80 6.68 -39.22 -0.26 1.54 16 22 O -0.49 -6.40 12.84 -19.43 -0.25 -6.65 16 23 O -0.35 -7.54 9.71 -59.28 -0.58 -8.12 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 1.53 7.85 -51.93 -0.41 1.12 16 28 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.14 2.54 7.15 -52.49 -0.38 2.17 16 30 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 32 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 33 H 0.39 3.04 9.06 45.56 0.41 3.45 16 LS Contribution 288.27 15.07 4.34 4.34 Total: -1.00 -32.53 288.27 -7.32 -39.85 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -3.29 Total: 1.97 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -2.60 Total: -14.17 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 0.74 Total: -25.78 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -1.49 Total: -22.80 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.53 -7.32 -39.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259898116.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.142 kcal (2) G-P(sol) polarization free energy of solvation -32.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds