Wall clock time and date at job start Mon Mar 30 2020 05:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99863 * 2 1 4 4 H 1.48500 * 109.47073 * 240.00079 * 3 2 1 5 5 H 1.48492 * 109.47468 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47049 * 120.00341 * 3 2 1 7 7 C 1.37871 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00143 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00087 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47213 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.64513 * 303.29114 * 10 9 7 12 12 C 1.54451 * 110.87920 * 180.02562 * 10 9 7 13 13 O 1.43978 * 105.09344 * 219.72444 * 12 10 9 14 14 C 1.43782 * 107.05940 * 358.38007 * 13 12 10 15 15 H 1.09005 * 110.11179 * 265.79599 * 14 13 12 16 16 C 1.50696 * 110.11549 * 144.21267 * 14 13 12 17 17 C 1.38165 * 120.02666 * 257.29250 * 16 14 13 18 18 C 1.38245 * 120.05645 * 180.02562 * 17 16 14 19 19 C 1.38290 * 120.10982 * 359.97438 * 18 17 16 20 20 C 1.38126 * 120.05768 * 0.02562 * 19 18 17 21 21 C 1.38714 * 120.03000 * 77.31665 * 16 14 13 22 22 O 1.35901 * 120.05102 * 0.02562 * 21 16 14 23 23 O 1.44393 * 106.22336 * 25.00298 * 14 13 12 24 24 H 0.97000 * 119.99671 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47009 * 60.00625 * 9 7 2 26 26 H 1.08997 * 109.47595 * 300.00596 * 9 7 2 27 27 H 1.09002 * 110.32374 * 338.68663 * 12 10 9 28 28 H 1.08999 * 110.31931 * 100.77888 * 12 10 9 29 29 H 1.07997 * 119.97398 * 0.02562 * 17 16 14 30 30 H 1.07995 * 119.94685 * 179.70646 * 18 17 16 31 31 H 1.08005 * 119.97140 * 179.97438 * 19 18 17 32 32 H 1.07998 * 120.03128 * 180.02562 * 20 19 18 33 33 H 0.96697 * 114.00182 * 90.00072 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9206 -3.5904 -0.8531 12 6 1.5061 -5.0182 -0.0012 13 8 2.2652 -5.8594 0.8872 14 6 3.3858 -5.0846 1.3469 15 1 4.2558 -5.2744 0.7183 16 6 3.6988 -5.4262 2.7809 17 6 3.3135 -4.5709 3.7953 18 6 3.6007 -4.8834 5.1109 19 6 4.2737 -6.0526 5.4153 20 6 4.6610 -6.9109 4.4048 21 6 4.3743 -6.5993 3.0835 22 8 4.7552 -7.4416 2.0874 23 8 2.9895 -3.7001 1.2413 24 1 -0.4850 0.8401 -0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 0.4887 -4.8950 0.3700 28 1 1.4932 -5.4418 -1.0054 29 1 2.7874 -3.6575 3.5602 30 1 3.3029 -4.2113 5.9021 31 1 4.4973 -6.2943 6.4439 32 1 5.1862 -7.8241 4.6430 33 1 5.6361 -7.2587 1.7329 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259898116.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:25 Heat of formation + Delta-G solvation = -132.833294 kcal Electronic energy + Delta-G solvation = -18117.028933 eV Core-core repulsion = 15107.007084 eV Total energy + Delta-G solvation = -3010.021850 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.64516 -40.30213 -37.60115 -36.19511 -35.26797 -33.45337 -31.72974 -30.78779 -28.60444 -26.19275 -25.03036 -23.59468 -22.61493 -22.03616 -19.38417 -18.80417 -17.92860 -17.75754 -17.25298 -16.79435 -16.48502 -16.14612 -15.89905 -15.52499 -14.75656 -14.53644 -14.45294 -13.85912 -13.59915 -13.43261 -13.18517 -13.09553 -13.00121 -12.54032 -12.53792 -12.36729 -11.83669 -11.49307 -11.23809 -11.03166 -10.70541 -10.60142 -9.93676 -9.62262 -8.22488 -6.32138 0.16991 0.32352 1.39282 1.42277 1.50266 2.39725 2.48087 2.74333 2.94484 3.12617 3.25165 3.65303 3.82290 3.92422 4.00002 4.08363 4.16219 4.37439 4.48000 4.56882 4.59635 4.77353 4.85464 5.01717 5.02591 5.30878 5.36559 5.43712 5.51318 5.53954 5.72964 5.88458 6.04247 6.18464 6.78862 6.81207 7.35681 8.89243 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.028133 B = 0.005681 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.017228 B = 4927.924651 C = 5487.243785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.964 3.036 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.056 0.944 9 C 0.034 3.966 10 C 0.060 3.940 11 H 0.084 0.916 12 C 0.026 3.974 13 O -0.392 6.392 14 C 0.270 3.730 15 H 0.091 0.909 16 C -0.149 4.149 17 C -0.091 4.091 18 C -0.138 4.138 19 C -0.087 4.087 20 C -0.151 4.151 21 C 0.123 3.877 22 O -0.502 6.502 23 O -0.378 6.378 24 H 0.265 0.735 25 H 0.026 0.974 26 H -0.003 1.003 27 H 0.074 0.926 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.146 0.854 31 H 0.165 0.835 32 H 0.159 0.841 33 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.694 -12.941 7.292 18.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.788 3.212 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.571 4.571 8 H 0.074 0.926 9 C -0.003 4.003 10 C 0.003 3.997 11 H 0.102 0.898 12 C -0.050 4.050 13 O -0.313 6.313 14 C 0.175 3.825 15 H 0.108 0.892 16 C -0.150 4.150 17 C -0.110 4.110 18 C -0.155 4.155 19 C -0.105 4.105 20 C -0.169 4.169 21 C 0.078 3.922 22 O -0.315 6.315 23 O -0.298 6.298 24 H 0.074 0.926 25 H 0.044 0.956 26 H 0.016 0.984 27 H 0.093 0.907 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.164 0.836 31 H 0.183 0.817 32 H 0.176 0.824 33 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 10.009 -13.117 7.575 18.155 hybrid contribution 0.358 1.372 -0.551 1.521 sum 10.367 -11.745 7.024 17.168 Atomic orbital electron populations 1.70062 1.07605 1.27958 1.51488 1.25885 0.95754 1.03114 0.94672 0.85519 0.78317 0.78259 0.79073 1.18916 1.20582 1.19806 1.21399 0.93263 0.91808 1.50673 0.92609 1.19015 0.93221 0.91695 0.96370 1.23939 0.93511 0.95838 0.86433 0.89823 1.24162 0.96098 0.89388 0.95379 1.88901 1.40071 1.37919 1.64456 1.22785 0.90031 0.76880 0.92808 0.89236 1.20139 1.04167 0.96677 0.94021 1.21070 0.97771 0.98844 0.93274 1.21475 0.99810 0.98738 0.95524 1.21508 0.95567 0.92695 1.00745 1.21681 1.02535 1.01773 0.90900 1.18330 0.97108 0.87832 0.88917 1.84810 1.40266 1.54239 1.52226 1.89535 1.72539 1.25587 1.42168 0.92628 0.95575 0.98444 0.90724 0.87340 0.87144 0.83593 0.81712 0.82368 0.73276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.32 13.29 21.44 0.28 -56.03 16 2 C 0.00 0.22 5.46 84.65 0.46 0.68 16 3 Si 0.96 44.64 29.54 68.60 2.03 46.67 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.53 -30.65 8.95 25.60 0.23 -30.42 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 9 C 0.03 1.79 4.65 29.85 0.14 1.93 16 10 C 0.06 2.57 3.35 31.09 0.10 2.67 16 11 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 12 C 0.03 0.96 7.66 72.48 0.56 1.52 16 13 O -0.39 -15.14 11.25 -125.99 -1.42 -16.56 16 14 C 0.27 9.92 3.73 71.23 0.27 10.18 16 15 H 0.09 2.89 8.01 -2.38 -0.02 2.87 16 16 C -0.15 -4.98 5.54 -19.77 -0.11 -5.09 16 17 C -0.09 -3.04 9.38 22.25 0.21 -2.83 16 18 C -0.14 -3.42 10.04 22.28 0.22 -3.19 16 19 C -0.09 -1.71 10.04 22.26 0.22 -1.48 16 20 C -0.15 -3.16 9.99 22.37 0.22 -2.94 16 21 C 0.12 3.32 6.68 22.51 0.15 3.47 16 22 O -0.50 -11.97 12.84 -92.44 -1.19 -13.16 16 23 O -0.38 -16.74 9.71 -125.99 -1.22 -17.97 16 24 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 25 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 27 H 0.07 2.84 7.85 -2.39 -0.02 2.82 16 28 H 0.11 3.27 8.14 -2.39 -0.02 3.26 16 29 H 0.11 4.28 7.15 -2.91 -0.02 4.26 16 30 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 31 H 0.17 1.92 8.06 -2.91 -0.02 1.89 16 32 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 33 H 0.41 5.45 9.06 -74.06 -0.67 4.78 16 Total: -1.00 -71.62 288.27 1.61 -70.01 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.45 Total: 12.54 kcal Atomic # 6 Polarization: -28.18 SS G_CDS: 2.68 Total: -25.50 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.28 Total: -56.03 kcal Atomic # 8 Polarization: -43.86 SS G_CDS: -3.83 Total: -47.68 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -71.62 1.61 -70.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259898116.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.824 kcal (2) G-P(sol) polarization free energy of solvation -71.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds