Wall clock time and date at job start Mon Mar 30 2020 05:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81007 * 1 3 3 C 1.76198 * 100.00092 * 2 1 4 4 N 1.32582 * 119.27508 * 0.02562 * 3 2 1 5 5 C 1.32086 * 120.55511 * 179.73824 * 4 3 2 6 6 C 1.39073 * 119.41735 * 0.29999 * 5 4 3 7 7 C 1.37823 * 118.58846 * 359.87304 * 6 5 4 8 8 N 1.32348 * 119.27383 * 180.02562 * 3 2 1 9 9 C 1.50464 * 122.58057 * 179.82751 * 7 6 5 10 10 H 1.08990 * 109.30659 * 257.34281 * 9 7 6 11 11 C 1.50699 * 109.30323 * 137.74230 * 9 7 6 12 12 H 1.07998 * 120.00493 * 275.23862 * 11 9 7 13 13 C 1.37882 * 119.99837 * 95.24426 * 11 9 7 14 14 N 1.31516 * 119.99401 * 184.71912 * 13 11 9 15 15 Si 1.86795 * 119.99931 * 4.72188 * 13 11 9 16 16 H 1.48496 * 109.47215 * 85.39901 * 15 13 11 17 17 H 1.48498 * 109.47114 * 205.39639 * 15 13 11 18 18 H 1.48500 * 109.47410 * 325.39547 * 15 13 11 19 19 C 1.52806 * 110.44260 * 17.64363 * 9 7 6 20 20 C 1.53309 * 108.49366 * 308.92081 * 19 9 7 21 21 C 1.50365 * 118.63887 * 180.14108 * 6 5 4 22 22 H 1.08996 * 109.46934 * 60.00284 * 1 2 3 23 23 H 1.09004 * 109.47266 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46883 * 299.99949 * 1 2 3 25 25 H 1.08007 * 120.29206 * 179.97438 * 5 4 3 26 26 H 0.97003 * 119.99472 * 180.02562 * 14 13 11 27 27 H 1.09001 * 109.63657 * 68.63088 * 19 9 7 28 28 H 1.09005 * 109.62736 * 189.02462 * 19 9 7 29 29 H 1.08997 * 109.63922 * 189.54066 * 20 19 9 30 30 H 1.09001 * 109.63815 * 309.95041 * 20 19 9 31 31 H 1.08997 * 109.30883 * 317.43699 * 21 6 5 32 32 H 1.09004 * 109.30668 * 76.83120 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8101 0.0000 0.0000 3 6 2.1161 1.7352 0.0000 4 7 1.0897 2.5745 0.0005 5 6 1.2900 3.8801 0.0057 6 6 2.5910 4.3716 0.0044 7 6 3.6356 3.4726 0.0002 8 7 3.3654 2.1720 -0.0005 9 6 5.0768 3.9051 -0.0054 10 1 5.4828 3.7929 -1.0106 11 6 5.8602 3.0400 0.9480 12 1 5.8925 3.2867 1.9989 13 6 6.5359 1.9336 0.4784 14 7 7.1423 1.1268 1.3216 15 14 6.5900 1.5809 -1.3551 16 1 7.7083 2.3385 -1.9722 17 1 6.7974 0.1268 -1.5735 18 1 5.3075 1.9969 -1.9774 19 6 5.1974 5.3654 0.4282 20 6 4.2263 6.2037 -0.4111 21 6 2.7988 5.8608 0.0136 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.4508 4.5600 0.0057 26 1 7.6180 0.3486 0.9912 27 1 4.9418 5.4564 1.4839 28 1 6.2183 5.7119 0.2674 29 1 4.4147 7.2635 -0.2397 30 1 4.3626 5.9736 -1.4678 31 1 2.0957 6.3271 -0.6766 32 1 2.6200 6.2434 1.0185 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259906387.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:37 Heat of formation + Delta-G solvation = 30.653024 kcal Electronic energy + Delta-G solvation = -16315.345020 eV Core-core repulsion = 13787.458091 eV Total energy + Delta-G solvation = -2527.886929 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.083 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.54436 -36.62429 -33.76250 -32.31807 -30.87485 -29.73064 -28.69114 -25.33545 -24.00627 -23.34806 -21.19602 -19.60711 -17.40925 -17.04814 -16.88879 -15.03892 -14.86346 -14.32849 -14.13469 -13.82752 -13.52301 -13.17175 -13.07952 -12.81467 -12.47540 -12.18128 -11.83171 -11.72918 -10.82308 -10.74153 -10.63765 -10.38047 -10.18161 -9.93766 -9.72183 -9.55643 -9.45942 -8.78697 -8.53082 -8.35282 -7.30556 -6.04765 -4.06626 1.38777 1.69717 1.77694 2.50905 3.35634 3.45568 3.51751 4.29061 4.51563 4.73388 5.02846 5.12338 5.22573 5.29987 5.32517 5.35867 5.39230 5.46318 5.85078 5.91917 5.99781 6.07805 6.15633 6.19315 6.44273 6.47332 6.65902 6.84314 7.08930 7.12710 7.54025 7.71836 8.46400 8.65669 8.96686 9.59334 11.07654 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.016638 B = 0.011983 C = 0.007713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.462490 B = 2336.112023 C = 3629.350724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.014 6.014 3 C 0.279 3.721 4 N -0.545 5.545 5 C 0.145 3.855 6 C -0.210 4.210 7 C 0.225 3.775 8 N -0.461 5.461 9 C 0.051 3.949 10 H 0.058 0.942 11 C -0.506 4.506 12 H 0.073 0.927 13 C 0.095 3.905 14 N -0.890 5.890 15 Si 0.880 3.120 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.263 1.263 19 C -0.101 4.101 20 C -0.126 4.126 21 C -0.060 4.060 22 H 0.084 0.916 23 H 0.098 0.902 24 H 0.085 0.915 25 H 0.158 0.842 26 H 0.265 0.735 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.643 5.468 -4.333 13.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.219 5.781 3 C -0.097 4.097 4 N -0.263 5.263 5 C -0.024 4.024 6 C -0.217 4.217 7 C 0.077 3.923 8 N -0.176 5.176 9 C 0.032 3.968 10 H 0.076 0.924 11 C -0.543 4.543 12 H 0.091 0.909 13 C -0.109 4.109 14 N -0.527 5.527 15 Si 0.708 3.292 16 H -0.209 1.209 17 H -0.214 1.214 18 H -0.188 1.188 19 C -0.139 4.139 20 C -0.163 4.163 21 C -0.099 4.099 22 H 0.103 0.897 23 H 0.117 0.883 24 H 0.104 0.896 25 H 0.175 0.825 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.981 3.257 -4.307 12.237 hybrid contribution -0.790 1.582 -0.808 1.944 sum -11.771 4.838 -5.115 13.717 Atomic orbital electron populations 1.23449 0.95592 1.05486 1.06597 1.85876 1.05055 0.95523 1.91646 1.24712 0.88049 0.99738 0.97217 1.68566 1.34891 1.04188 1.18703 1.22960 0.95843 0.91369 0.92256 1.21222 0.94913 0.98427 1.07149 1.22714 0.98544 0.86819 0.84208 1.68637 1.18897 1.17513 1.12549 1.18269 0.86076 0.93655 0.98827 0.92448 1.20601 1.29053 1.09617 0.94992 0.90850 1.24916 0.93871 0.94669 0.97465 1.69892 1.34088 1.14067 1.34612 0.86793 0.78285 0.77616 0.86478 1.20859 1.21364 1.18771 1.21590 0.98503 0.94654 0.99188 1.21692 0.94580 0.99621 1.00450 1.20191 0.98013 0.90142 1.01520 0.89709 0.88305 0.89576 0.82483 0.92557 0.92142 0.91273 0.91925 0.92127 0.91421 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.62 101.05 0.97 -0.88 16 2 S -0.01 -0.25 22.90 -107.50 -2.46 -2.71 16 3 C 0.28 6.01 7.85 -91.00 -0.71 5.30 16 4 N -0.55 -10.32 9.15 -13.40 -0.12 -10.44 16 5 C 0.15 2.45 10.92 -17.13 -0.19 2.26 16 6 C -0.21 -3.84 5.74 -104.63 -0.60 -4.44 16 7 C 0.22 5.10 6.18 -82.42 -0.51 4.59 16 8 N -0.46 -11.34 9.08 -9.86 -0.09 -11.43 16 9 C 0.05 1.19 1.96 -93.14 -0.18 1.01 16 10 H 0.06 1.37 5.24 -51.93 -0.27 1.10 16 11 C -0.51 -14.13 8.30 -34.44 -0.29 -14.42 16 12 H 0.07 2.24 8.06 -52.49 -0.42 1.81 16 13 C 0.09 2.76 5.45 -17.82 -0.10 2.66 16 14 N -0.89 -27.47 13.96 55.43 0.77 -26.70 16 15 Si 0.88 22.65 26.44 -169.99 -4.49 18.16 16 16 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 17 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 18 H -0.26 -6.72 6.79 56.52 0.38 -6.34 16 19 C -0.10 -1.89 5.23 -26.67 -0.14 -2.03 16 20 C -0.13 -1.85 5.97 -26.66 -0.16 -2.01 16 21 C -0.06 -0.85 5.72 -28.13 -0.16 -1.01 16 22 H 0.08 1.09 8.11 -51.92 -0.42 0.66 16 23 H 0.10 1.00 8.14 -51.91 -0.42 0.58 16 24 H 0.09 1.13 8.11 -51.92 -0.42 0.71 16 25 H 0.16 1.96 8.06 -52.48 -0.42 1.54 16 26 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 27 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.90 8.10 -51.93 -0.42 0.47 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 278.24 15.07 4.19 4.19 Total: -1.00 -32.50 278.24 -8.33 -40.83 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: -4.07 Total: -2.94 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -2.06 Total: -8.96 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 0.56 Total: -48.57 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.49 Total: 18.16 kcal Atomic # 16 Polarization: -0.25 SS G_CDS: -2.46 Total: -2.71 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -32.50 -8.33 -40.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259906387.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.485 kcal (2) G-P(sol) polarization free energy of solvation -32.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds