Wall clock time and date at job start Mon Mar 30 2020 05:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81007 * 1 3 3 C 1.76198 * 100.00092 * 2 1 4 4 N 1.32582 * 119.27508 * 0.02562 * 3 2 1 5 5 C 1.32086 * 120.55511 * 179.73824 * 4 3 2 6 6 C 1.39073 * 119.41735 * 0.29999 * 5 4 3 7 7 C 1.37823 * 118.58846 * 359.87304 * 6 5 4 8 8 N 1.32348 * 119.27383 * 180.02562 * 3 2 1 9 9 C 1.50464 * 122.58057 * 179.82751 * 7 6 5 10 10 H 1.08990 * 109.30659 * 257.34281 * 9 7 6 11 11 C 1.50699 * 109.30323 * 137.74230 * 9 7 6 12 12 H 1.07998 * 120.00493 * 275.23862 * 11 9 7 13 13 C 1.37882 * 119.99837 * 95.24426 * 11 9 7 14 14 N 1.31516 * 119.99401 * 184.71912 * 13 11 9 15 15 Si 1.86795 * 119.99931 * 4.72188 * 13 11 9 16 16 H 1.48496 * 109.47215 * 85.39901 * 15 13 11 17 17 H 1.48498 * 109.47114 * 205.39639 * 15 13 11 18 18 H 1.48500 * 109.47410 * 325.39547 * 15 13 11 19 19 C 1.52806 * 110.44260 * 17.64363 * 9 7 6 20 20 C 1.53309 * 108.49366 * 308.92081 * 19 9 7 21 21 C 1.50365 * 118.63887 * 180.14108 * 6 5 4 22 22 H 1.08996 * 109.46934 * 60.00284 * 1 2 3 23 23 H 1.09004 * 109.47266 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46883 * 299.99949 * 1 2 3 25 25 H 1.08007 * 120.29206 * 179.97438 * 5 4 3 26 26 H 0.97003 * 119.99472 * 180.02562 * 14 13 11 27 27 H 1.09001 * 109.63657 * 68.63088 * 19 9 7 28 28 H 1.09005 * 109.62736 * 189.02462 * 19 9 7 29 29 H 1.08997 * 109.63922 * 189.54066 * 20 19 9 30 30 H 1.09001 * 109.63815 * 309.95041 * 20 19 9 31 31 H 1.08997 * 109.30883 * 317.43699 * 21 6 5 32 32 H 1.09004 * 109.30668 * 76.83120 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8101 0.0000 0.0000 3 6 2.1161 1.7352 0.0000 4 7 1.0897 2.5745 0.0005 5 6 1.2900 3.8801 0.0057 6 6 2.5910 4.3716 0.0044 7 6 3.6356 3.4726 0.0002 8 7 3.3654 2.1720 -0.0005 9 6 5.0768 3.9051 -0.0054 10 1 5.4828 3.7929 -1.0106 11 6 5.8602 3.0400 0.9480 12 1 5.8925 3.2867 1.9989 13 6 6.5359 1.9336 0.4784 14 7 7.1423 1.1268 1.3216 15 14 6.5900 1.5809 -1.3551 16 1 7.7083 2.3385 -1.9722 17 1 6.7974 0.1268 -1.5735 18 1 5.3075 1.9969 -1.9774 19 6 5.1974 5.3654 0.4282 20 6 4.2263 6.2037 -0.4111 21 6 2.7988 5.8608 0.0136 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.4508 4.5600 0.0057 26 1 7.6180 0.3486 0.9912 27 1 4.9418 5.4564 1.4839 28 1 6.2183 5.7119 0.2674 29 1 4.4147 7.2635 -0.2397 30 1 4.3626 5.9736 -1.4678 31 1 2.0957 6.3271 -0.6766 32 1 2.6200 6.2434 1.0185 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259906387.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:37 Heat of formation + Delta-G solvation = 9.252684 kcal Electronic energy + Delta-G solvation = -16316.273009 eV Core-core repulsion = 13787.458091 eV Total energy + Delta-G solvation = -2528.814917 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.083 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.03930 -38.09676 -35.38624 -34.27552 -32.40707 -31.30622 -29.78038 -27.08211 -25.57566 -24.79875 -22.81282 -21.02380 -19.08874 -18.88146 -18.51913 -16.58328 -16.34602 -15.99146 -15.66922 -15.17280 -15.02987 -14.58890 -14.42452 -14.31134 -14.01190 -13.53019 -13.29691 -13.20939 -12.79859 -12.22197 -12.19950 -11.94577 -11.74015 -11.72161 -11.39965 -11.14671 -11.05748 -10.69104 -10.38319 -9.94170 -8.72282 -8.29853 -6.33004 -0.09917 0.28078 0.30685 1.25380 1.31284 1.34869 1.43667 2.36481 2.75921 3.09318 3.36008 3.77624 3.83664 3.90542 3.99315 4.18921 4.33800 4.36780 4.56167 4.64736 4.71671 4.79542 4.90306 4.93992 5.10865 5.19649 5.31050 5.33416 5.53293 5.61850 5.67427 6.13611 6.23159 6.68985 7.14142 7.36290 8.87081 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.016638 B = 0.011983 C = 0.007713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.462490 B = 2336.112023 C = 3629.350724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.064 6.064 3 C 0.259 3.741 4 N -0.536 5.536 5 C 0.151 3.849 6 C -0.200 4.200 7 C 0.184 3.816 8 N -0.514 5.514 9 C 0.048 3.952 10 H 0.049 0.951 11 C -0.500 4.500 12 H 0.030 0.970 13 C 0.042 3.958 14 N -0.943 5.943 15 Si 0.938 3.062 16 H -0.262 1.262 17 H -0.295 1.295 18 H -0.263 1.263 19 C -0.100 4.100 20 C -0.118 4.118 21 C -0.059 4.059 22 H 0.091 0.909 23 H 0.132 0.868 24 H 0.088 0.912 25 H 0.214 0.786 26 H 0.264 0.736 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.111 0.889 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.639 7.950 -5.853 17.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S 0.169 5.831 3 C -0.117 4.117 4 N -0.254 5.254 5 C -0.019 4.019 6 C -0.207 4.207 7 C 0.038 3.962 8 N -0.230 5.230 9 C 0.029 3.971 10 H 0.066 0.934 11 C -0.537 4.537 12 H 0.048 0.952 13 C -0.157 4.157 14 N -0.583 5.583 15 Si 0.764 3.236 16 H -0.187 1.187 17 H -0.222 1.222 18 H -0.187 1.187 19 C -0.138 4.138 20 C -0.155 4.155 21 C -0.097 4.097 22 H 0.110 0.890 23 H 0.150 0.850 24 H 0.107 0.893 25 H 0.230 0.770 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.119 0.881 30 H 0.079 0.921 31 H 0.129 0.871 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.978 5.771 -5.837 16.210 hybrid contribution 0.000 0.859 -0.256 0.896 sum -13.979 6.630 -6.093 16.628 Atomic orbital electron populations 1.23514 0.90530 1.07746 1.06923 1.85945 1.10654 0.95024 1.91521 1.24983 0.87780 1.00965 0.97936 1.68662 1.33675 1.05097 1.17982 1.23871 0.96919 0.91218 0.89889 1.21644 0.94216 1.00253 1.04608 1.22544 0.98970 0.87479 0.87187 1.68507 1.21043 1.19096 1.14397 1.18248 0.86446 0.95518 0.96921 0.93366 1.20836 1.29002 1.09911 0.93968 0.95179 1.25637 0.94002 0.94729 1.01318 1.70031 1.36470 1.15236 1.36520 0.85875 0.78702 0.77034 0.81967 1.18710 1.22154 1.18718 1.21525 1.00229 0.92577 0.99449 1.21656 0.93689 1.00766 0.99383 1.20383 0.98466 0.87066 1.03789 0.89027 0.85002 0.89344 0.76976 0.92754 0.93121 0.91232 0.88146 0.92056 0.87084 0.89004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.81 9.62 113.37 1.09 -1.72 16 2 S -0.06 -2.35 22.90 -56.49 -1.29 -3.64 16 3 C 0.26 11.08 7.85 180.48 1.42 12.50 16 4 N -0.54 -18.94 9.15 -196.32 -1.80 -20.74 16 5 C 0.15 4.44 10.92 84.86 0.93 5.37 16 6 C -0.20 -6.69 5.74 -19.87 -0.11 -6.80 16 7 C 0.18 8.30 6.18 42.23 0.26 8.56 16 8 N -0.51 -25.68 9.08 -185.11 -1.68 -27.36 16 9 C 0.05 2.26 1.96 -12.43 -0.02 2.24 16 10 H 0.05 2.32 5.24 -2.39 -0.01 2.30 16 11 C -0.50 -29.30 8.30 25.60 0.21 -29.09 16 12 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 13 C 0.04 2.54 5.45 84.66 0.46 3.01 16 14 N -0.94 -61.47 13.96 21.45 0.30 -61.17 16 15 Si 0.94 48.61 26.44 68.60 1.81 50.42 16 16 H -0.26 -12.51 7.11 99.48 0.71 -11.80 16 17 H -0.29 -15.44 7.11 99.48 0.71 -14.73 16 18 H -0.26 -13.44 6.79 99.48 0.68 -12.77 16 19 C -0.10 -3.62 5.23 30.63 0.16 -3.46 16 20 C -0.12 -2.97 5.97 30.64 0.18 -2.79 16 21 C -0.06 -1.35 5.72 29.69 0.17 -1.18 16 22 H 0.09 2.08 8.11 -2.40 -0.02 2.06 16 23 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 24 H 0.09 2.09 8.11 -2.40 -0.02 2.07 16 25 H 0.21 3.82 8.06 -2.91 -0.02 3.80 16 26 H 0.26 16.25 8.31 -92.71 -0.77 15.48 16 27 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 28 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 29 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.06 1.57 8.10 -2.39 -0.02 1.55 16 31 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -77.22 278.24 3.17 -74.05 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: 1.08 Total: 1.81 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: 4.74 Total: -13.36 kcal Atomic # 7 Polarization: -106.09 SS G_CDS: -3.18 Total: -109.27 kcal Atomic # 14 Polarization: 48.61 SS G_CDS: 1.81 Total: 50.42 kcal Atomic # 16 Polarization: -2.35 SS G_CDS: -1.29 Total: -3.64 kcal Total: -77.22 3.17 -74.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259906387.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.304 kcal (2) G-P(sol) polarization free energy of solvation -77.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds