Wall clock time and date at job start Mon Mar 30 2020 05:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81005 * 1 3 3 C 1.76199 * 99.99803 * 2 1 4 4 C 1.39557 * 120.47133 * 179.97438 * 3 2 1 5 5 C 1.40498 * 118.06191 * 180.02562 * 4 3 2 6 6 C 1.41583 * 120.62137 * 180.02562 * 5 4 3 7 7 H 1.07998 * 120.00031 * 353.77252 * 6 5 4 8 8 C 1.40080 * 119.99542 * 173.78030 * 6 5 4 9 9 N 1.30685 * 120.00401 * 6.22985 * 8 6 5 10 10 Si 1.86805 * 119.99308 * 186.23407 * 8 6 5 11 11 H 1.48508 * 109.46968 * 94.98467 * 10 8 6 12 12 H 1.48501 * 109.46717 * 214.98066 * 10 8 6 13 13 H 1.48491 * 109.47637 * 334.98357 * 10 8 6 14 14 N 1.34266 * 118.75802 * 0.02562 * 5 4 3 15 15 C 1.31363 * 120.79671 * 359.97438 * 14 5 4 16 16 C 1.50704 * 118.91904 * 179.97438 * 15 14 5 17 17 C 1.53782 * 113.61342 * 217.49903 * 16 15 14 18 18 C 1.53785 * 87.07824 * 220.01676 * 17 16 15 19 19 C 1.53777 * 87.08244 * 25.43174 * 18 17 16 20 20 N 1.31986 * 122.16629 * 0.02562 * 15 14 5 21 21 H 1.09000 * 109.46747 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46986 * 299.99544 * 1 2 3 23 23 H 1.08999 * 109.47325 * 60.00140 * 1 2 3 24 24 H 1.07995 * 120.97136 * 0.02562 * 4 3 2 25 25 H 0.97001 * 120.00351 * 180.02562 * 9 8 6 26 26 H 1.08993 * 112.84831 * 348.80255 * 16 15 14 27 27 H 1.08999 * 113.61415 * 334.56127 * 17 16 15 28 28 H 1.08991 * 113.61794 * 105.46981 * 17 16 15 29 29 H 1.08999 * 113.61370 * 270.87868 * 18 17 16 30 30 H 1.08998 * 113.61150 * 139.97744 * 18 17 16 31 31 H 1.08997 * 113.61619 * 220.02082 * 19 18 17 32 32 H 1.08998 * 113.61775 * 89.11612 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8101 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 3.4234 2.2234 0.0005 5 6 3.6089 3.6160 0.0011 6 6 4.9119 4.1700 0.0011 7 1 5.7726 3.5256 0.1021 8 6 5.0845 5.5539 -0.1298 9 7 4.0443 6.3451 -0.1295 10 14 6.8016 6.2684 -0.3050 11 1 7.1177 6.4500 -1.7446 12 1 6.8637 7.5820 0.3849 13 1 7.7881 5.3416 0.3054 14 7 2.5275 4.4118 0.0016 15 6 1.3170 3.9015 0.0010 16 6 0.1331 4.8340 0.0022 17 6 -1.0425 4.3359 0.8595 18 6 -1.9700 4.8508 -0.2539 19 6 -0.7869 4.6632 -1.2182 20 7 1.1035 2.5991 0.0005 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8900 24 1 4.2679 1.5503 0.0005 25 1 4.1638 7.3035 -0.2205 26 1 0.4103 5.8697 0.1985 27 1 -1.0660 3.2530 0.9813 28 1 -1.1531 4.8715 1.8023 29 1 -2.2690 5.8912 -0.1268 30 1 -2.8115 4.1899 -0.4616 31 1 -0.6910 5.4629 -1.9525 32 1 -0.7404 3.6698 -1.6643 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259926236.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:25 Heat of formation + Delta-G solvation = 48.711031 kcal Electronic energy + Delta-G solvation = -15978.711860 eV Core-core repulsion = 13451.607985 eV Total energy + Delta-G solvation = -2527.103875 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.32472 -37.46810 -34.05701 -31.49040 -30.71085 -28.42534 -26.50732 -25.47191 -25.07070 -22.51487 -21.24551 -18.97589 -17.71664 -16.68533 -15.33850 -15.07588 -14.95994 -14.39440 -14.01142 -13.63425 -13.21409 -13.07168 -12.88468 -12.10162 -11.89010 -11.88326 -11.60566 -11.35558 -11.15632 -10.93401 -10.41796 -10.18963 -10.06542 -9.98081 -9.92790 -9.90539 -9.00730 -8.98088 -8.22048 -7.52575 -6.92742 -6.55512 -4.83156 2.36739 2.53850 2.68881 2.91189 3.01319 3.05140 3.12692 3.83204 4.58021 5.13980 5.16138 5.18024 5.42285 5.51947 5.66742 5.68750 5.91933 6.00835 6.10923 6.22197 6.29954 6.35957 6.39129 6.46763 6.58381 6.75120 6.87386 6.95467 7.06826 7.17034 7.64531 7.97260 8.40404 8.67704 8.82735 10.02443 10.15307 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.019157 B = 0.008282 C = 0.005957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.219742 B = 3380.098946 C = 4699.415609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.128 6.128 3 C 0.164 3.836 4 C -0.296 4.296 5 C 0.278 3.722 6 C -0.416 4.416 7 H 0.089 0.911 8 C 0.069 3.931 9 N -0.705 5.705 10 Si 0.912 3.088 11 H -0.268 1.268 12 H -0.274 1.274 13 H -0.259 1.259 14 N -0.510 5.510 15 C 0.332 3.668 16 C -0.032 4.032 17 C -0.123 4.123 18 C -0.140 4.140 19 C -0.121 4.121 20 N -0.616 5.616 21 H 0.084 0.916 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.110 0.890 25 H 0.277 0.723 26 H 0.103 0.897 27 H 0.090 0.910 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.996 -2.516 -0.258 6.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S 0.108 5.892 3 C -0.085 4.085 4 C -0.331 4.331 5 C 0.149 3.851 6 C -0.450 4.450 7 H 0.107 0.893 8 C -0.158 4.158 9 N -0.326 5.326 10 Si 0.736 3.264 11 H -0.193 1.193 12 H -0.199 1.199 13 H -0.183 1.183 14 N -0.230 5.230 15 C 0.058 3.942 16 C -0.053 4.053 17 C -0.161 4.161 18 C -0.178 4.178 19 C -0.160 4.160 20 N -0.342 5.342 21 H 0.103 0.897 22 H 0.100 0.900 23 H 0.100 0.900 24 H 0.128 0.872 25 H 0.088 0.912 26 H 0.122 0.878 27 H 0.108 0.892 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.111 -2.718 -0.259 6.693 hybrid contribution 0.749 0.815 -0.114 1.113 sum -5.362 -1.902 -0.373 5.702 Atomic orbital electron populations 1.23148 0.94947 1.04177 1.06361 1.85255 1.07098 1.03331 1.93484 1.22346 0.92359 0.95800 0.98032 1.22038 0.94889 0.97338 1.18797 1.18666 0.92827 0.86804 0.86853 1.19687 0.91663 0.92302 1.41312 0.89250 1.26132 0.98863 0.97370 0.93477 1.70088 1.30883 1.04764 1.26826 0.86229 0.81837 0.78969 0.79390 1.19269 1.19899 1.18284 1.69193 0.96826 1.37573 1.19397 1.22434 0.92858 0.87448 0.91488 1.21091 0.89349 0.97789 0.97028 1.22875 0.94987 1.01861 0.96424 1.22794 0.96696 1.00609 0.97690 1.22816 0.95197 1.01885 0.96075 1.67945 1.33369 1.03969 1.28957 0.89685 0.90020 0.90032 0.87160 0.91220 0.87840 0.89159 0.92395 0.90704 0.91998 0.92080 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 9.68 101.05 0.98 -0.85 16 2 S -0.13 -2.43 22.74 -107.50 -2.44 -4.87 16 3 C 0.16 3.88 7.01 -16.51 -0.12 3.77 16 4 C -0.30 -7.51 9.73 -38.24 -0.37 -7.89 16 5 C 0.28 7.61 6.57 -84.68 -0.56 7.06 16 6 C -0.42 -10.91 9.19 -37.62 -0.35 -11.26 16 7 H 0.09 2.19 7.86 -52.49 -0.41 1.77 16 8 C 0.07 1.70 5.49 -17.35 -0.10 1.61 16 9 N -0.70 -18.11 11.55 55.55 0.64 -17.47 16 10 Si 0.91 17.98 29.56 -169.99 -5.03 12.95 16 11 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 12 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 13 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 14 N -0.51 -13.96 7.96 -8.75 -0.07 -14.03 16 15 C 0.33 8.12 6.88 -157.40 -1.08 7.04 16 16 C -0.03 -0.65 4.16 -90.96 -0.38 -1.02 16 17 C -0.12 -2.08 7.56 -25.92 -0.20 -2.28 16 18 C -0.14 -2.01 8.08 -25.92 -0.21 -2.22 16 19 C -0.12 -2.08 7.60 -25.92 -0.20 -2.28 16 20 N -0.62 -14.41 8.11 -9.59 -0.08 -14.49 16 21 H 0.08 1.06 8.14 -51.92 -0.42 0.63 16 22 H 0.08 1.31 8.14 -51.91 -0.42 0.89 16 23 H 0.08 1.31 8.14 -51.92 -0.42 0.89 16 24 H 0.11 2.62 8.06 -52.49 -0.42 2.20 16 25 H 0.28 6.39 8.29 -40.82 -0.34 6.05 16 26 H 0.10 2.14 8.14 -51.93 -0.42 1.72 16 27 H 0.09 1.62 7.40 -51.93 -0.38 1.23 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.08 1.49 8.00 -51.93 -0.42 1.07 16 LS Contribution 287.89 15.07 4.34 4.34 Total: -1.00 -28.41 287.89 -9.36 -37.76 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -4.15 Total: 4.13 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -2.57 Total: -8.33 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: 0.49 Total: -45.99 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Atomic # 16 Polarization: -2.43 SS G_CDS: -2.44 Total: -4.87 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.41 -9.36 -37.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259926236.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.476 kcal (2) G-P(sol) polarization free energy of solvation -28.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds