Wall clock time and date at job start Mon Mar 30 2020 05:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81005 * 1 3 3 C 1.76199 * 99.99803 * 2 1 4 4 C 1.39557 * 120.47133 * 179.97438 * 3 2 1 5 5 C 1.40498 * 118.06191 * 180.02562 * 4 3 2 6 6 C 1.41583 * 120.62137 * 180.02562 * 5 4 3 7 7 H 1.07998 * 120.00031 * 353.77252 * 6 5 4 8 8 C 1.40080 * 119.99542 * 173.78030 * 6 5 4 9 9 N 1.30685 * 120.00401 * 6.22985 * 8 6 5 10 10 Si 1.86805 * 119.99308 * 186.23407 * 8 6 5 11 11 H 1.48508 * 109.46968 * 94.98467 * 10 8 6 12 12 H 1.48501 * 109.46717 * 214.98066 * 10 8 6 13 13 H 1.48491 * 109.47637 * 334.98357 * 10 8 6 14 14 N 1.34266 * 118.75802 * 0.02562 * 5 4 3 15 15 C 1.31363 * 120.79671 * 359.97438 * 14 5 4 16 16 C 1.50704 * 118.91904 * 179.97438 * 15 14 5 17 17 C 1.53782 * 113.61342 * 217.49903 * 16 15 14 18 18 C 1.53785 * 87.07824 * 220.01676 * 17 16 15 19 19 C 1.53777 * 87.08244 * 25.43174 * 18 17 16 20 20 N 1.31986 * 122.16629 * 0.02562 * 15 14 5 21 21 H 1.09000 * 109.46747 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46986 * 299.99544 * 1 2 3 23 23 H 1.08999 * 109.47325 * 60.00140 * 1 2 3 24 24 H 1.07995 * 120.97136 * 0.02562 * 4 3 2 25 25 H 0.97001 * 120.00351 * 180.02562 * 9 8 6 26 26 H 1.08993 * 112.84831 * 348.80255 * 16 15 14 27 27 H 1.08999 * 113.61415 * 334.56127 * 17 16 15 28 28 H 1.08991 * 113.61794 * 105.46981 * 17 16 15 29 29 H 1.08999 * 113.61370 * 270.87868 * 18 17 16 30 30 H 1.08998 * 113.61150 * 139.97744 * 18 17 16 31 31 H 1.08997 * 113.61619 * 220.02082 * 19 18 17 32 32 H 1.08998 * 113.61775 * 89.11612 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8101 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 3.4234 2.2234 0.0005 5 6 3.6089 3.6160 0.0011 6 6 4.9119 4.1700 0.0011 7 1 5.7726 3.5256 0.1021 8 6 5.0845 5.5539 -0.1298 9 7 4.0443 6.3451 -0.1295 10 14 6.8016 6.2684 -0.3050 11 1 7.1177 6.4500 -1.7446 12 1 6.8637 7.5820 0.3849 13 1 7.7881 5.3416 0.3054 14 7 2.5275 4.4118 0.0016 15 6 1.3170 3.9015 0.0010 16 6 0.1331 4.8340 0.0022 17 6 -1.0425 4.3359 0.8595 18 6 -1.9700 4.8508 -0.2539 19 6 -0.7869 4.6632 -1.2182 20 7 1.1035 2.5991 0.0005 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8900 24 1 4.2679 1.5503 0.0005 25 1 4.1638 7.3035 -0.2205 26 1 0.4103 5.8697 0.1985 27 1 -1.0660 3.2530 0.9813 28 1 -1.1531 4.8715 1.8023 29 1 -2.2690 5.8912 -0.1268 30 1 -2.8115 4.1899 -0.4616 31 1 -0.6910 5.4629 -1.9525 32 1 -0.7404 3.6698 -1.6643 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259926236.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:25 Heat of formation + Delta-G solvation = 33.589542 kcal Electronic energy + Delta-G solvation = -15979.367577 eV Core-core repulsion = 13451.607985 eV Total energy + Delta-G solvation = -2527.759592 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.08298 -38.99623 -35.92945 -33.38485 -32.55022 -29.73477 -28.41407 -27.03565 -26.44094 -24.38697 -22.94494 -20.53081 -19.43942 -18.47668 -17.04091 -16.84964 -16.38794 -15.89039 -15.79745 -15.38464 -14.83513 -14.64835 -14.29522 -13.53075 -13.35231 -13.28035 -13.18755 -12.91071 -12.78951 -12.75217 -11.96179 -11.75472 -11.70932 -11.63780 -11.37428 -11.32244 -10.79060 -10.77345 -10.08252 -9.43878 -8.55610 -8.41911 -6.80989 0.64431 0.75308 0.83913 1.38278 1.42425 1.51464 1.53816 2.17209 2.73118 3.57103 3.61307 3.78302 3.93242 4.11778 4.26338 4.36201 4.39374 4.43067 4.68561 4.79879 4.92006 4.95560 4.99353 4.99944 5.08505 5.09230 5.13166 5.18934 5.38349 5.67652 5.80299 6.02545 6.48381 6.73025 6.90970 8.13312 8.30924 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.019157 B = 0.008282 C = 0.005957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.219742 B = 3380.098946 C = 4699.415609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.103 6.103 3 C 0.150 3.850 4 C -0.329 4.329 5 C 0.245 3.755 6 C -0.447 4.447 7 H 0.095 0.905 8 C 0.025 3.975 9 N -0.740 5.740 10 Si 0.994 3.006 11 H -0.262 1.262 12 H -0.263 1.263 13 H -0.253 1.253 14 N -0.545 5.545 15 C 0.316 3.684 16 C -0.050 4.050 17 C -0.117 4.117 18 C -0.113 4.113 19 C -0.118 4.118 20 N -0.606 5.606 21 H 0.126 0.874 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.114 0.886 25 H 0.285 0.715 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.140 -2.835 -0.370 7.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S 0.133 5.867 3 C -0.100 4.100 4 C -0.363 4.363 5 C 0.116 3.884 6 C -0.481 4.481 7 H 0.113 0.887 8 C -0.199 4.199 9 N -0.362 5.362 10 Si 0.813 3.187 11 H -0.187 1.187 12 H -0.187 1.187 13 H -0.176 1.176 14 N -0.265 5.265 15 C 0.042 3.958 16 C -0.071 4.071 17 C -0.155 4.155 18 C -0.151 4.151 19 C -0.156 4.156 20 N -0.333 5.333 21 H 0.144 0.856 22 H 0.097 0.903 23 H 0.096 0.904 24 H 0.132 0.868 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.115 0.885 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.272 -3.049 -0.368 7.893 hybrid contribution 1.013 0.797 -0.071 1.291 sum -6.259 -2.252 -0.439 6.666 Atomic orbital electron populations 1.23276 0.91891 1.06720 1.06023 1.85115 1.10331 0.98606 1.92697 1.23034 0.92085 0.98676 0.96229 1.22135 0.96146 0.96975 1.21055 1.19147 0.93661 0.88103 0.87477 1.20083 0.91722 0.93757 1.42527 0.88723 1.27105 1.03436 0.96990 0.92379 1.70169 1.33428 1.05448 1.27113 0.85020 0.75896 0.78260 0.79514 1.18677 1.18748 1.17644 1.69217 0.97771 1.38505 1.21051 1.23330 0.93437 0.88760 0.90263 1.21338 0.89024 0.96323 1.00391 1.22829 0.93914 1.01339 0.97427 1.22709 0.95830 1.02319 0.94196 1.22784 0.95827 1.01387 0.95648 1.68137 1.32901 1.03597 1.28616 0.85597 0.90299 0.90369 0.86812 0.90399 0.89204 0.90142 0.91383 0.88545 0.89567 0.91512 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.14 9.68 113.37 1.10 -2.04 16 2 S -0.10 -3.80 22.74 -56.49 -1.28 -5.08 16 3 C 0.15 7.20 7.01 84.82 0.59 7.79 16 4 C -0.33 -17.40 9.73 23.14 0.23 -17.17 16 5 C 0.24 14.08 6.57 40.15 0.26 14.34 16 6 C -0.45 -24.46 9.19 23.54 0.22 -24.25 16 7 H 0.09 4.83 7.86 -2.91 -0.02 4.81 16 8 C 0.03 1.26 5.49 85.31 0.47 1.73 16 9 N -0.74 -39.24 11.55 21.84 0.25 -38.99 16 10 Si 0.99 37.21 29.56 68.60 2.03 39.24 16 11 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 12 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 13 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 14 N -0.54 -31.14 7.96 -181.59 -1.44 -32.59 16 15 C 0.32 15.90 6.88 138.82 0.96 16.85 16 16 C -0.05 -2.03 4.16 -11.01 -0.05 -2.08 16 17 C -0.12 -3.78 7.56 31.12 0.24 -3.54 16 18 C -0.11 -2.91 8.08 31.12 0.25 -2.66 16 19 C -0.12 -3.93 7.60 31.12 0.24 -3.69 16 20 N -0.61 -28.71 8.11 -184.25 -1.49 -30.20 16 21 H 0.13 2.60 8.14 -2.40 -0.02 2.58 16 22 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 23 H 0.08 2.33 8.14 -2.40 -0.02 2.31 16 24 H 0.11 5.68 8.06 -2.91 -0.02 5.65 16 25 H 0.29 13.47 8.29 -92.71 -0.77 12.70 16 26 H 0.09 3.83 8.14 -2.39 -0.02 3.81 16 27 H 0.08 2.77 7.40 -2.39 -0.02 2.75 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.10 2.11 8.14 -2.39 -0.02 2.10 16 30 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.07 2.47 8.00 -2.39 -0.02 2.45 16 Total: -1.00 -64.40 287.89 3.67 -60.73 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 1.11 Total: 21.61 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: 4.50 Total: -14.72 kcal Atomic # 7 Polarization: -99.09 SS G_CDS: -2.69 Total: -101.78 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 2.03 Total: 39.24 kcal Atomic # 16 Polarization: -3.80 SS G_CDS: -1.28 Total: -5.08 kcal Total: -64.40 3.67 -60.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259926236.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.317 kcal (2) G-P(sol) polarization free energy of solvation -64.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds