Wall clock time and date at job start Mon Mar 30 2020 06:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99962 * 2 1 4 4 C 1.50699 * 109.47024 * 180.02562 * 3 2 1 5 5 C 1.38278 * 119.93226 * 0.02562 * 4 3 2 6 6 C 1.38507 * 120.03466 * 179.97438 * 5 4 3 7 7 C 1.39310 * 119.82475 * 0.02562 * 6 5 4 8 8 C 1.38505 * 119.82613 * 359.70486 * 7 6 5 9 9 C 1.38209 * 119.93022 * 179.97438 * 4 3 2 10 10 C 1.50703 * 119.92693 * 0.02562 * 9 4 3 11 11 C 1.50701 * 109.47064 * 84.99722 * 10 9 4 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 O 1.36495 * 108.63003 * 179.97438 * 7 6 5 20 20 C 1.43985 * 105.48977 * 342.71557 * 19 7 6 21 21 O 1.36503 * 131.54021 * 180.02562 * 6 5 4 22 22 H 1.08998 * 109.47233 * 59.99164 * 1 2 3 23 23 H 1.09003 * 109.47038 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46446 * 299.99408 * 1 2 3 25 25 H 1.08995 * 109.47283 * 60.00746 * 3 2 1 26 26 H 1.08999 * 109.47373 * 300.00358 * 3 2 1 27 27 H 1.08002 * 119.98325 * 359.97438 * 5 4 3 28 28 H 1.07998 * 119.98484 * 180.32066 * 8 7 6 29 29 H 1.09002 * 109.47152 * 324.99814 * 10 9 4 30 30 H 1.09001 * 109.46980 * 204.99915 * 10 9 4 31 31 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 32 32 H 1.09002 * 110.57335 * 268.56578 * 20 19 7 33 33 H 1.09002 * 110.57182 * 145.68859 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.1057 -0.0626 -0.0016 6 6 5.4862 -0.1745 -0.0028 7 6 6.2744 0.9742 -0.0023 8 6 5.6734 2.2220 -0.0070 9 6 4.2945 2.3260 -0.0013 10 6 3.6430 3.6849 -0.0008 11 6 3.3153 4.0844 1.4149 12 1 3.5552 3.4208 2.2325 13 6 2.7102 5.2975 1.6664 14 7 2.4185 6.1057 0.6708 15 14 2.3046 5.7928 3.4212 16 1 3.5537 5.8420 4.2230 17 1 1.6625 7.1319 3.4217 18 1 1.3747 4.7983 4.0141 19 8 7.5876 0.6019 -0.0031 20 6 7.5964 -0.7779 0.4083 21 8 6.3060 -1.2660 -0.0043 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8901 25 1 1.6887 1.8463 0.8900 26 1 1.6886 1.8464 -0.8899 27 1 3.4922 -0.9515 -0.0016 28 1 6.2820 3.1142 -0.0119 29 1 2.7264 3.6487 -0.5895 30 1 4.3255 4.4152 -0.4356 31 1 1.9925 6.9590 0.8478 32 1 7.7072 -0.8544 1.4900 33 1 8.3920 -1.3237 -0.0988 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259975074.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:54 Heat of formation + Delta-G solvation = -89.960689 kcal Electronic energy + Delta-G solvation = -18122.361184 eV Core-core repulsion = 15114.198430 eV Total energy + Delta-G solvation = -3008.162754 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.71031 -38.47402 -36.81378 -35.87634 -33.31099 -31.02156 -30.82087 -27.34278 -26.85177 -25.64599 -24.51875 -23.24841 -21.55782 -20.82509 -17.30986 -17.13455 -16.87540 -16.45309 -15.82617 -15.50496 -15.40395 -14.67247 -14.42709 -13.96058 -13.51524 -13.25313 -12.97543 -12.60840 -12.54948 -12.14169 -12.00616 -11.59898 -11.39297 -11.01298 -10.86117 -10.60269 -10.39372 -10.33008 -9.66241 -9.47622 -9.31729 -8.50026 -8.14323 -7.35389 -6.12483 -4.17304 1.69530 1.85686 3.14533 3.26824 3.31773 3.35031 3.78941 4.07723 4.15933 4.39743 4.88992 5.03247 5.05864 5.21854 5.40912 5.57223 5.58112 5.64493 5.79309 5.84029 5.88142 6.00803 6.12512 6.22034 6.60392 6.63231 6.75159 6.96617 7.02650 7.39623 7.53499 7.64279 7.68184 7.83093 8.20193 8.87617 9.47161 10.96817 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.017742 B = 0.007494 C = 0.005797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.779717 B = 3735.407909 C = 4828.739475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.397 6.397 3 C 0.112 3.888 4 C -0.084 4.084 5 C -0.077 4.077 6 C -0.004 4.004 7 C 0.026 3.974 8 C -0.102 4.102 9 C -0.019 4.019 10 C 0.050 3.950 11 C -0.516 4.516 12 H 0.058 0.942 13 C 0.062 3.938 14 N -0.892 5.892 15 Si 0.894 3.106 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.276 1.276 19 O -0.315 6.315 20 C 0.214 3.786 21 O -0.316 6.316 22 H 0.040 0.960 23 H 0.080 0.920 24 H 0.042 0.958 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.136 0.864 28 H 0.133 0.867 29 H 0.036 0.964 30 H 0.033 0.967 31 H 0.264 0.736 32 H 0.076 0.924 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.209 -11.095 -1.167 11.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.316 6.316 3 C 0.036 3.964 4 C -0.084 4.084 5 C -0.096 4.096 6 C -0.048 4.048 7 C -0.018 4.018 8 C -0.121 4.121 9 C -0.019 4.019 10 C 0.013 3.987 11 C -0.554 4.554 12 H 0.077 0.923 13 C -0.140 4.140 14 N -0.530 5.530 15 Si 0.722 3.278 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 O -0.232 6.232 20 C 0.102 3.898 21 O -0.233 6.233 22 H 0.058 0.942 23 H 0.098 0.902 24 H 0.061 0.939 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.154 0.846 28 H 0.151 0.849 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.405 -11.191 -1.316 11.522 hybrid contribution -0.126 0.441 1.067 1.162 sum 2.279 -10.750 -0.248 10.992 Atomic orbital electron populations 1.22669 0.81314 1.02027 1.00234 1.87762 1.19404 1.28841 1.95640 1.21261 0.89277 0.83488 1.02342 1.19203 0.94417 0.91639 1.03166 1.19747 0.89043 0.98698 1.02095 1.19592 0.92716 0.84043 1.08405 1.19831 0.81724 0.95178 1.05043 1.19974 0.94140 0.93538 1.04458 1.20198 0.91283 0.97541 0.92897 1.18374 0.95954 0.86271 0.98053 1.20973 1.39915 1.02796 0.91673 0.92350 1.24982 0.95551 0.96311 0.97192 1.69936 1.41817 1.10315 1.30937 0.86617 0.78783 0.77709 0.84740 1.20095 1.21182 1.20127 1.87294 1.23265 1.27442 1.85171 1.25452 0.86291 0.78545 0.99526 1.87278 1.19969 1.30582 1.85489 0.94158 0.90163 0.93947 0.89919 0.91648 0.84648 0.84918 0.94634 0.94876 0.92650 0.90652 0.85998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.40 -6.63 9.18 -35.23 -0.32 -6.96 16 3 C 0.11 2.06 5.10 36.01 0.18 2.24 16 4 C -0.08 -1.66 5.88 -104.62 -0.62 -2.28 16 5 C -0.08 -1.45 9.39 -39.47 -0.37 -1.82 16 6 C 0.00 -0.08 7.15 -39.08 -0.28 -0.36 16 7 C 0.03 0.50 7.15 -39.08 -0.28 0.22 16 8 C -0.10 -2.07 9.69 -39.47 -0.38 -2.46 16 9 C -0.02 -0.40 5.07 -104.62 -0.53 -0.93 16 10 C 0.05 1.21 4.60 -29.03 -0.13 1.08 16 11 C -0.52 -13.60 8.73 -34.44 -0.30 -13.90 16 12 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -25.09 13.29 55.43 0.74 -24.35 16 15 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 O -0.32 -5.43 11.40 -45.67 -0.52 -5.95 16 20 C 0.21 2.88 8.89 101.05 0.90 3.77 16 21 O -0.32 -5.33 11.40 -45.70 -0.52 -5.85 16 22 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.08 1.63 7.76 -51.93 -0.40 1.23 16 26 H 0.07 1.18 7.50 -51.93 -0.39 0.79 16 27 H 0.14 2.38 7.00 -52.49 -0.37 2.02 16 28 H 0.13 2.57 8.06 -52.49 -0.42 2.15 16 29 H 0.04 0.88 6.82 -51.93 -0.35 0.53 16 30 H 0.03 0.84 8.05 -51.93 -0.42 0.43 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 286.19 15.07 4.31 4.31 Total: -1.00 -29.53 286.19 -6.14 -35.67 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -4.01 Total: -1.27 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -0.79 Total: -11.32 kcal Atomic # 7 Polarization: -25.09 SS G_CDS: 0.74 Total: -24.35 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -1.37 Total: -18.75 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.53 -6.14 -35.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259975074.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.295 kcal (2) G-P(sol) polarization free energy of solvation -29.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds