Wall clock time and date at job start Mon Mar 30 2020 06:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38233 * 119.99368 * 2 1 4 4 C 1.38237 * 119.99654 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.00312 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.46665 * 340.00062 * 5 4 3 7 7 N 1.46899 * 109.47365 * 219.99909 * 5 4 3 8 8 C 1.50706 * 109.47294 * 99.99680 * 5 4 3 9 9 H 1.07999 * 119.99515 * 0.02562 * 8 5 4 10 10 C 1.37870 * 120.00176 * 180.02562 * 8 5 4 11 11 N 1.31520 * 119.99883 * 0.02562 * 10 8 5 12 12 Si 1.86800 * 120.00043 * 180.02562 * 10 8 5 13 13 H 1.48495 * 109.47216 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47389 * 119.99848 * 12 10 8 15 15 H 1.48501 * 109.47057 * 239.99829 * 12 10 8 16 16 C 1.38242 * 120.00185 * 0.25152 * 4 3 2 17 17 C 1.38241 * 119.99426 * 359.48903 * 16 4 3 18 18 C 1.50701 * 119.99697 * 180.25380 * 17 16 4 19 19 C 1.38232 * 120.00085 * 0.49139 * 17 16 4 20 20 N 1.48014 * 119.99929 * 179.76411 * 19 17 16 21 21 O 1.21803 * 120.00013 * 270.01968 * 20 19 17 22 22 O 1.21805 * 120.00182 * 90.02191 * 20 19 17 23 23 H 1.08992 * 109.47065 * 90.00712 * 1 2 3 24 24 H 1.08999 * 109.46781 * 210.00253 * 1 2 3 25 25 H 1.08991 * 109.47492 * 329.99855 * 1 2 3 26 26 H 1.07993 * 120.00746 * 359.97398 * 3 2 1 27 27 H 1.00897 * 110.99782 * 299.99792 * 7 5 4 28 28 H 1.00900 * 110.99667 * 63.95678 * 7 5 4 29 29 H 0.97004 * 119.99507 * 180.02562 * 11 10 8 30 30 H 1.07990 * 120.00181 * 179.72836 * 16 4 3 31 31 H 1.08995 * 109.47069 * 270.23397 * 18 17 16 32 32 H 1.09007 * 109.47076 * 30.23443 * 18 17 16 33 33 H 1.08998 * 109.46813 * 150.23157 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.3339 2.5024 0.0000 6 1 3.6794 3.2996 -0.3523 7 7 5.4980 2.3954 -0.8897 8 6 4.7982 2.8151 1.3992 9 1 4.5707 2.1363 2.2079 10 6 5.5133 3.9675 1.6469 11 7 5.7898 4.7942 0.6621 12 14 6.0893 4.3547 3.3812 13 1 5.6523 3.2738 4.3008 14 1 7.5710 4.4526 3.4004 15 1 5.5022 5.6458 3.8211 16 6 4.2718 0.0001 -0.0042 17 6 3.5806 -1.1971 0.0012 18 6 4.3342 -2.5021 0.0019 19 6 2.1982 -1.1971 0.0011 20 7 1.4582 -2.4790 0.0016 21 8 1.1542 -3.0071 -1.0530 22 8 1.1533 -3.0058 1.0567 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5138 26 1 1.6581 2.1325 -0.0004 27 1 6.1205 1.6626 -0.5841 28 1 5.2101 2.2501 -1.8458 29 1 6.2933 5.6049 0.8364 30 1 5.3516 0.0002 -0.0082 31 1 4.5159 -2.8172 -1.0256 32 1 5.2866 -2.3715 0.5157 33 1 3.7451 -3.2615 0.5161 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259977340.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:49 Heat of formation + Delta-G solvation = 11.736695 kcal Electronic energy + Delta-G solvation = -18174.398289 eV Core-core repulsion = 15202.938215 eV Total energy + Delta-G solvation = -2971.460073 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.09153 -39.53350 -36.32108 -35.27929 -33.85736 -32.21192 -30.56910 -28.55112 -26.95850 -26.36756 -25.17986 -22.73140 -21.17095 -20.17525 -18.64508 -18.63604 -17.53535 -16.58755 -15.29182 -15.18357 -14.57927 -14.24410 -14.18170 -14.02156 -13.42860 -13.04534 -12.92196 -12.68554 -12.22536 -12.06496 -11.78138 -11.55612 -11.46242 -11.08933 -10.99507 -10.96812 -10.86159 -10.68908 -10.08144 -9.54763 -8.67865 -8.66024 -8.55848 -7.37368 -6.07544 -4.24679 0.71073 1.03526 1.27350 1.64659 3.21627 3.30790 3.33722 3.62000 4.33790 4.41794 4.58204 4.87632 5.11383 5.15980 5.23393 5.37253 5.38232 5.40654 5.49520 5.67431 5.70312 5.83207 5.97250 6.04528 6.20974 6.41793 6.46507 6.59920 6.94465 7.20796 7.70296 7.75792 7.90739 8.36764 8.74278 8.90593 9.45790 10.96626 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.030838 B = 0.005817 C = 0.005722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.744038 B = 4812.358667 C = 4891.808704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.038 4.038 3 C -0.116 4.116 4 C -0.027 4.027 5 C 0.250 3.750 6 H 0.055 0.945 7 N -0.808 5.808 8 C -0.538 4.538 9 H 0.056 0.944 10 C 0.087 3.913 11 N -0.843 5.843 12 Si 0.887 3.113 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.283 1.283 16 C -0.117 4.117 17 C -0.038 4.038 18 C -0.127 4.127 19 C -0.057 4.057 20 N 0.029 4.971 21 O -0.153 6.153 22 O -0.156 6.156 23 H 0.081 0.919 24 H 0.062 0.938 25 H 0.085 0.915 26 H 0.141 0.859 27 H 0.319 0.681 28 H 0.301 0.699 29 H 0.258 0.742 30 H 0.140 0.860 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.298 -8.933 -2.635 10.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.039 4.039 3 C -0.135 4.135 4 C -0.029 4.029 5 C 0.141 3.859 6 H 0.073 0.927 7 N -0.334 5.334 8 C -0.576 4.576 9 H 0.074 0.926 10 C -0.121 4.121 11 N -0.477 5.477 12 Si 0.715 3.285 13 H -0.198 1.198 14 H -0.208 1.208 15 H -0.209 1.209 16 C -0.135 4.135 17 C -0.039 4.039 18 C -0.183 4.183 19 C -0.137 4.137 20 N 0.557 4.443 21 O -0.375 6.375 22 O -0.377 6.377 23 H 0.100 0.900 24 H 0.081 0.919 25 H 0.104 0.896 26 H 0.159 0.841 27 H 0.132 0.868 28 H 0.112 0.888 29 H 0.068 0.932 30 H 0.158 0.842 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.635 -7.315 -2.465 9.004 hybrid contribution -0.204 -1.086 0.828 1.380 sum -4.839 -8.401 -1.638 9.832 Atomic orbital electron populations 1.20950 0.90234 1.03855 1.03298 1.19516 0.96462 0.90570 0.97395 1.21021 0.94298 0.96224 1.01962 1.22274 0.94171 0.99631 0.86866 1.18396 0.87631 0.85606 0.94310 0.92710 1.59171 1.18651 1.52694 1.02839 1.20786 1.38318 1.07301 0.91230 0.92563 1.24931 0.95019 0.95757 0.96435 1.70104 1.36481 1.10674 1.30400 0.86635 0.78625 0.78370 0.84902 1.19787 1.20837 1.20882 1.20885 1.00680 0.89860 1.02117 1.19483 0.89584 0.97384 0.97432 1.20950 1.01034 0.93078 1.03279 1.20390 0.91636 0.82060 1.19650 1.43704 0.98413 1.02251 0.99914 1.94509 1.56617 1.65400 1.20997 1.94525 1.56751 1.65548 1.20894 0.90024 0.91909 0.89607 0.84104 0.86765 0.88819 0.93183 0.84233 0.90034 0.89628 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 9.77 36.01 0.35 -1.31 16 2 C -0.04 -0.61 5.88 -104.62 -0.62 -1.23 16 3 C -0.12 -1.96 9.33 -39.58 -0.37 -2.33 16 4 C -0.03 -0.50 4.88 -104.62 -0.51 -1.01 16 5 C 0.25 5.53 2.85 -70.01 -0.20 5.33 16 6 H 0.06 1.32 8.00 -51.93 -0.42 0.91 16 7 N -0.81 -16.94 8.36 -6.65 -0.06 -17.00 16 8 C -0.54 -13.58 8.70 -34.44 -0.30 -13.88 16 9 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 10 C 0.09 2.25 5.39 -17.82 -0.10 2.16 16 11 N -0.84 -23.00 12.77 55.43 0.71 -22.29 16 12 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 13 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 C -0.12 -1.97 8.95 -39.58 -0.35 -2.33 16 17 C -0.04 -0.60 5.88 -104.62 -0.62 -1.22 16 18 C -0.13 -1.68 9.77 36.01 0.35 -1.32 16 19 C -0.06 -0.96 6.09 -79.95 -0.49 -1.45 16 20 N 0.03 0.50 2.26 33.96 0.08 0.57 16 21 O -0.15 -2.58 19.26 -29.46 -0.57 -3.15 16 22 O -0.16 -2.71 19.00 -29.46 -0.56 -3.27 16 23 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.06 0.85 7.32 -51.93 -0.38 0.47 16 25 H 0.09 0.97 8.08 -51.93 -0.42 0.55 16 26 H 0.14 2.19 8.04 -52.49 -0.42 1.77 16 27 H 0.32 6.29 7.33 -39.29 -0.29 6.00 16 28 H 0.30 5.60 9.06 -39.29 -0.36 5.24 16 29 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 30 H 0.14 2.22 6.65 -52.49 -0.35 1.87 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.08 0.99 8.09 -51.93 -0.42 0.57 16 33 H 0.06 0.86 7.32 -51.93 -0.38 0.48 16 LS Contribution 292.23 15.07 4.40 4.40 Total: -1.00 -27.94 292.23 -7.68 -35.61 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -3.82 Total: 8.50 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -2.84 Total: -18.58 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.73 Total: -38.72 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -1.13 Total: -6.43 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.94 -7.68 -35.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259977340.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.350 kcal (2) G-P(sol) polarization free energy of solvation -27.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds