Wall clock time and date at job start Mon Mar 30 2020 06:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38233 * 119.99368 * 2 1 4 4 C 1.38237 * 119.99654 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.00312 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.46665 * 340.00062 * 5 4 3 7 7 N 1.46899 * 109.47365 * 219.99909 * 5 4 3 8 8 C 1.50706 * 109.47294 * 99.99680 * 5 4 3 9 9 H 1.07999 * 119.99515 * 0.02562 * 8 5 4 10 10 C 1.37870 * 120.00176 * 180.02562 * 8 5 4 11 11 N 1.31520 * 119.99883 * 0.02562 * 10 8 5 12 12 Si 1.86800 * 120.00043 * 180.02562 * 10 8 5 13 13 H 1.48495 * 109.47216 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47389 * 119.99848 * 12 10 8 15 15 H 1.48501 * 109.47057 * 239.99829 * 12 10 8 16 16 C 1.38242 * 120.00185 * 0.25152 * 4 3 2 17 17 C 1.38241 * 119.99426 * 359.48903 * 16 4 3 18 18 C 1.50701 * 119.99697 * 180.25380 * 17 16 4 19 19 C 1.38232 * 120.00085 * 0.49139 * 17 16 4 20 20 N 1.48014 * 119.99929 * 179.76411 * 19 17 16 21 21 O 1.21803 * 120.00013 * 270.01968 * 20 19 17 22 22 O 1.21805 * 120.00182 * 90.02191 * 20 19 17 23 23 H 1.08992 * 109.47065 * 90.00712 * 1 2 3 24 24 H 1.08999 * 109.46781 * 210.00253 * 1 2 3 25 25 H 1.08991 * 109.47492 * 329.99855 * 1 2 3 26 26 H 1.07993 * 120.00746 * 359.97398 * 3 2 1 27 27 H 1.00897 * 110.99782 * 299.99792 * 7 5 4 28 28 H 1.00900 * 110.99667 * 63.95678 * 7 5 4 29 29 H 0.97004 * 119.99507 * 180.02562 * 11 10 8 30 30 H 1.07990 * 120.00181 * 179.72836 * 16 4 3 31 31 H 1.08995 * 109.47069 * 270.23397 * 18 17 16 32 32 H 1.09007 * 109.47076 * 30.23443 * 18 17 16 33 33 H 1.08998 * 109.46813 * 150.23157 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.3339 2.5024 0.0000 6 1 3.6794 3.2996 -0.3523 7 7 5.4980 2.3954 -0.8897 8 6 4.7982 2.8151 1.3992 9 1 4.5707 2.1363 2.2079 10 6 5.5133 3.9675 1.6469 11 7 5.7898 4.7942 0.6621 12 14 6.0893 4.3547 3.3812 13 1 5.6523 3.2738 4.3008 14 1 7.5710 4.4526 3.4004 15 1 5.5022 5.6458 3.8211 16 6 4.2718 0.0001 -0.0042 17 6 3.5806 -1.1971 0.0012 18 6 4.3342 -2.5021 0.0019 19 6 2.1982 -1.1971 0.0011 20 7 1.4582 -2.4790 0.0016 21 8 1.1542 -3.0071 -1.0530 22 8 1.1533 -3.0058 1.0567 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5138 26 1 1.6581 2.1325 -0.0004 27 1 6.1205 1.6626 -0.5841 28 1 5.2101 2.2501 -1.8458 29 1 6.2933 5.6049 0.8364 30 1 5.3516 0.0002 -0.0082 31 1 4.5159 -2.8172 -1.0256 32 1 5.2866 -2.3715 0.5157 33 1 3.7451 -3.2615 0.5161 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259977340.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:48 Heat of formation + Delta-G solvation = -3.627298 kcal Electronic energy + Delta-G solvation = -18175.064521 eV Core-core repulsion = 15202.938215 eV Total energy + Delta-G solvation = -2972.126306 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.41247 -40.87020 -37.65872 -36.89629 -35.05046 -34.01747 -32.10668 -29.71764 -28.45389 -27.82587 -26.66594 -24.30899 -22.40118 -21.67691 -19.97945 -19.96863 -18.91005 -18.43023 -16.83777 -16.69831 -16.18279 -15.71104 -15.41597 -15.40628 -14.44694 -14.44288 -14.27265 -14.10625 -13.59606 -13.39281 -13.11502 -12.96892 -12.85130 -12.79199 -12.55511 -12.35146 -12.34244 -12.20859 -11.81817 -11.35654 -10.60462 -10.09602 -9.92061 -9.00697 -8.04490 -6.26139 -0.63613 -0.30949 -0.00851 0.31676 1.40685 1.45135 1.53535 2.25341 2.47153 3.20521 3.24274 3.38512 3.64632 3.90558 4.06023 4.14020 4.15200 4.39127 4.39844 4.40423 4.45977 4.54050 4.77878 4.86152 4.94952 5.04466 5.10668 5.14385 5.57597 5.59587 5.71097 6.06009 6.40850 6.57522 7.03567 7.19037 7.47351 8.99081 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.030838 B = 0.005817 C = 0.005722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.744038 B = 4812.358667 C = 4891.808704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.036 4.036 3 C -0.122 4.122 4 C -0.042 4.042 5 C 0.257 3.743 6 H 0.027 0.973 7 N -0.819 5.819 8 C -0.545 4.545 9 H 0.047 0.953 10 C 0.042 3.958 11 N -0.875 5.875 12 Si 0.944 3.056 13 H -0.273 1.273 14 H -0.281 1.281 15 H -0.281 1.281 16 C -0.118 4.118 17 C -0.036 4.036 18 C -0.126 4.126 19 C -0.071 4.071 20 N 0.034 4.966 21 O -0.146 6.146 22 O -0.169 6.169 23 H 0.098 0.902 24 H 0.057 0.943 25 H 0.103 0.897 26 H 0.150 0.850 27 H 0.327 0.673 28 H 0.315 0.685 29 H 0.257 0.743 30 H 0.148 0.852 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.560 -9.933 -2.508 11.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.037 4.037 3 C -0.141 4.141 4 C -0.045 4.045 5 C 0.147 3.853 6 H 0.045 0.955 7 N -0.346 5.346 8 C -0.584 4.584 9 H 0.065 0.935 10 C -0.162 4.162 11 N -0.510 5.510 12 Si 0.770 3.230 13 H -0.197 1.197 14 H -0.207 1.207 15 H -0.207 1.207 16 C -0.137 4.137 17 C -0.038 4.038 18 C -0.182 4.182 19 C -0.151 4.151 20 N 0.562 4.438 21 O -0.372 6.372 22 O -0.388 6.388 23 H 0.116 0.884 24 H 0.076 0.924 25 H 0.122 0.878 26 H 0.168 0.832 27 H 0.140 0.860 28 H 0.127 0.873 29 H 0.066 0.934 30 H 0.166 0.834 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.905 -8.332 -2.307 9.941 hybrid contribution -0.173 -0.840 0.731 1.127 sum -5.079 -9.172 -1.576 10.602 Atomic orbital electron populations 1.21036 0.88110 1.04531 1.04547 1.19781 0.98033 0.89843 0.96065 1.21104 0.93817 0.97103 1.02053 1.21934 0.94826 0.98637 0.89060 1.18007 0.87717 0.86689 0.92884 0.95488 1.58962 1.18686 1.53394 1.03596 1.21062 1.37745 1.06905 0.92654 0.93479 1.25570 0.95393 0.95863 0.99396 1.70205 1.37628 1.11138 1.32035 0.85751 0.78024 0.77971 0.81220 1.19719 1.20725 1.20725 1.20912 1.01070 0.89576 1.02126 1.19754 0.89585 0.98246 0.96170 1.21032 1.01346 0.91287 1.04541 1.20655 0.92179 0.82256 1.19986 1.43694 0.98195 1.02158 0.99771 1.94502 1.56313 1.65357 1.20999 1.94531 1.57353 1.65825 1.21040 0.88381 0.92355 0.87789 0.83244 0.85975 0.87292 0.93351 0.83431 0.88349 0.87889 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.77 71.24 0.70 -2.32 16 2 C -0.04 -1.09 5.88 -19.87 -0.12 -1.21 16 3 C -0.12 -4.01 9.33 22.27 0.21 -3.80 16 4 C -0.04 -1.54 4.88 -19.86 -0.10 -1.63 16 5 C 0.26 11.41 2.85 43.42 0.12 11.54 16 6 H 0.03 1.34 8.00 -2.39 -0.02 1.32 16 7 N -0.82 -34.22 8.36 -174.95 -1.46 -35.68 16 8 C -0.55 -27.57 8.70 25.60 0.22 -27.35 16 9 H 0.05 2.42 7.74 -2.91 -0.02 2.39 16 10 C 0.04 2.21 5.39 84.65 0.46 2.67 16 11 N -0.87 -48.06 12.77 21.45 0.27 -47.79 16 12 Si 0.94 41.54 29.54 68.60 2.03 43.56 16 13 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 14 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 15 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 16 C -0.12 -3.85 8.95 22.27 0.20 -3.65 16 17 C -0.04 -1.10 5.88 -19.86 -0.12 -1.22 16 18 C -0.13 -3.02 9.77 71.24 0.70 -2.32 16 19 C -0.07 -2.25 6.09 36.37 0.22 -2.03 16 20 N 0.03 1.09 2.26 -46.47 -0.11 0.99 16 21 O -0.15 -4.66 19.26 18.88 0.36 -4.29 16 22 O -0.17 -5.63 19.00 18.88 0.36 -5.27 16 23 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.06 1.46 7.32 -2.39 -0.02 1.44 16 25 H 0.10 2.10 8.08 -2.39 -0.02 2.08 16 26 H 0.15 4.55 8.04 -2.91 -0.02 4.53 16 27 H 0.33 12.69 7.33 -89.70 -0.66 12.03 16 28 H 0.32 11.60 9.06 -89.69 -0.81 10.79 16 29 H 0.26 13.56 8.31 -92.71 -0.77 12.79 16 30 H 0.15 4.48 6.65 -2.92 -0.02 4.47 16 31 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.10 2.11 8.09 -2.38 -0.02 2.09 16 33 H 0.06 1.46 7.32 -2.39 -0.02 1.45 16 Total: -1.00 -58.19 292.23 3.63 -54.56 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: -0.32 Total: 25.25 kcal Atomic # 6 Polarization: -33.81 SS G_CDS: 2.49 Total: -31.32 kcal Atomic # 7 Polarization: -81.19 SS G_CDS: -1.29 Total: -82.48 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.72 Total: -9.56 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.56 kcal Total: -58.19 3.63 -54.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259977340.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.929 kcal (2) G-P(sol) polarization free energy of solvation -58.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds