Wall clock time and date at job start Mon Mar 30 2020 05:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99730 * 2 1 4 4 H 1.48501 * 109.47268 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47337 * 299.99731 * 3 2 1 6 6 H 1.48500 * 109.47330 * 60.00056 * 3 2 1 7 7 C 1.37879 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99936 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99678 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46839 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.86199 * 308.81330 * 10 9 7 12 12 C 1.54911 * 110.97811 * 185.00414 * 10 9 7 13 13 O 1.44195 * 103.07456 * 206.33148 * 12 10 9 14 14 C 1.43366 * 107.29106 * 21.43523 * 13 12 10 15 15 H 1.08999 * 109.62587 * 240.94008 * 14 13 12 16 16 C 1.50696 * 109.63223 * 120.54874 * 14 13 12 17 17 C 1.38267 * 119.94661 * 61.45241 * 16 14 13 18 18 C 1.38136 * 120.05830 * 179.97438 * 17 16 14 19 19 C 1.38733 * 119.94322 * 0.02562 * 18 17 16 20 20 O 1.35905 * 120.05429 * 179.97438 * 19 18 17 21 21 C 1.38723 * 119.89013 * 0.27339 * 19 18 17 22 22 C 1.38152 * 119.94281 * 359.47128 * 21 19 18 23 23 O 1.43755 * 108.79132 * 0.66871 * 14 13 12 24 24 H 0.96991 * 120.00211 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47245 * 60.00685 * 9 7 2 26 26 H 1.08998 * 109.47384 * 300.00233 * 9 7 2 27 27 H 1.09003 * 110.69919 * 87.93187 * 12 10 9 28 28 H 1.09001 * 110.69787 * 324.72516 * 12 10 9 29 29 H 1.08006 * 119.96706 * 0.02562 * 17 16 14 30 30 H 1.08002 * 120.03123 * 179.97438 * 18 17 16 31 31 H 0.96705 * 113.99576 * 90.00115 * 20 19 18 32 32 H 1.08005 * 120.03367 * 179.72206 * 21 19 18 33 33 H 1.07997 * 119.97523 * 180.27923 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 1 2.9835 -3.5426 -0.7913 12 6 1.5107 -5.0200 -0.1243 13 8 2.4192 -5.9426 0.5102 14 6 3.2697 -5.1771 1.3739 15 1 4.3070 -5.2872 1.0578 16 6 3.1186 -5.6618 2.7928 17 6 3.4467 -6.9657 3.1153 18 6 3.3096 -7.4124 4.4152 19 6 2.8418 -6.5516 5.3975 20 8 2.7055 -6.9888 6.6771 21 6 2.5074 -5.2456 5.0702 22 6 2.6513 -4.8022 3.7697 23 8 2.8874 -3.7937 1.2929 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8898 26 1 0.6240 -2.5567 0.8902 27 1 1.3640 -5.2829 -1.1720 28 1 0.5577 -4.9930 0.4042 29 1 3.8112 -7.6353 2.3502 30 1 3.5655 -8.4311 4.6666 31 1 3.4949 -6.8637 7.2216 32 1 2.1388 -4.5748 5.8322 33 1 2.3955 -3.7843 3.5152 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259982503.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:27 Heat of formation + Delta-G solvation = -111.676573 kcal Electronic energy + Delta-G solvation = -17874.122420 eV Core-core repulsion = 14865.017995 eV Total energy + Delta-G solvation = -3009.104425 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.26382 -39.23002 -36.65835 -34.67386 -33.28883 -31.45054 -30.90444 -29.63010 -26.79108 -24.47655 -23.34440 -22.61174 -21.28345 -20.53503 -18.40894 -17.19019 -16.53589 -16.18441 -15.93776 -15.36102 -15.03443 -14.64106 -14.40257 -14.00473 -13.45567 -13.35330 -12.91883 -12.34164 -12.21386 -11.97634 -11.88660 -11.66284 -11.43374 -11.20692 -10.64332 -10.51826 -10.41608 -9.79231 -9.52021 -9.23961 -9.12927 -8.90826 -8.51071 -8.44604 -6.06843 -4.08724 1.20726 1.43842 3.28978 3.36723 3.41458 3.59521 3.99504 4.17204 4.31916 4.41833 4.98767 5.02557 5.15266 5.27697 5.30787 5.47781 5.51173 5.60575 5.70826 5.75429 5.85410 6.11031 6.11893 6.31424 6.38221 6.47992 6.62351 6.71428 6.87339 7.33011 7.49235 7.58561 7.73255 7.89745 8.28584 8.95434 9.55168 11.04627 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.027420 B = 0.005255 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.922051 B = 5327.478266 C = 5945.868006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.059 0.941 9 C 0.027 3.973 10 C 0.060 3.940 11 H 0.075 0.925 12 C 0.021 3.979 13 O -0.389 6.389 14 C 0.269 3.731 15 H 0.087 0.913 16 C -0.113 4.113 17 C -0.080 4.080 18 C -0.154 4.154 19 C 0.102 3.898 20 O -0.502 6.502 21 C -0.150 4.150 22 C -0.067 4.067 23 O -0.357 6.357 24 H 0.261 0.739 25 H 0.037 0.963 26 H 0.030 0.970 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.387 0.613 32 H 0.129 0.871 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.818 -12.655 6.797 15.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.553 4.553 8 H 0.077 0.923 9 C -0.009 4.009 10 C 0.003 3.997 11 H 0.093 0.907 12 C -0.055 4.055 13 O -0.310 6.310 14 C 0.173 3.827 15 H 0.104 0.896 16 C -0.113 4.113 17 C -0.098 4.098 18 C -0.173 4.173 19 C 0.058 3.942 20 O -0.311 6.311 21 C -0.169 4.169 22 C -0.085 4.085 23 O -0.277 6.277 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.113 0.887 28 H 0.092 0.908 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.243 0.757 32 H 0.147 0.853 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.143 -12.741 6.745 15.670 hybrid contribution 0.817 1.066 0.132 1.350 sum 6.960 -11.675 6.878 15.233 Atomic orbital electron populations 1.69955 1.06054 1.26728 1.50776 1.24993 0.94853 0.99346 0.95190 0.86488 0.80142 0.83539 0.77576 1.19682 1.21011 1.20972 1.21140 0.93190 0.90392 1.50611 0.92277 1.19186 0.92892 0.90292 0.98570 1.24337 0.95119 0.96058 0.84172 0.90712 1.24405 0.93891 0.88874 0.98380 1.88803 1.49134 1.33123 1.59989 1.22516 0.94072 0.79031 0.87066 0.89635 1.20218 1.01239 0.94499 0.95380 1.20757 0.98449 0.94859 0.95725 1.21290 1.02604 1.00131 0.93266 1.18532 0.99235 0.91939 0.84498 1.84821 1.41561 1.84464 1.20299 1.21461 1.02699 0.95104 0.97601 1.21150 0.95014 1.01039 0.91343 1.89327 1.78139 1.22565 1.37699 0.92919 0.94505 0.95151 0.88721 0.90796 0.85457 0.85540 0.75729 0.85311 0.83786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.25 9.07 -34.44 -0.31 -14.56 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.03 0.68 4.75 -27.88 -0.13 0.55 16 10 C 0.06 1.22 3.41 -25.72 -0.09 1.13 16 11 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 12 C 0.02 0.36 7.54 38.17 0.29 0.65 16 13 O -0.39 -6.78 11.11 -59.04 -0.66 -7.44 16 14 C 0.27 4.61 4.30 36.00 0.15 4.76 16 15 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 16 C -0.11 -1.80 5.56 -104.60 -0.58 -2.38 16 17 C -0.08 -1.08 9.63 -39.61 -0.38 -1.46 16 18 C -0.15 -1.93 9.99 -39.44 -0.39 -2.32 16 19 C 0.10 1.33 6.70 -39.22 -0.26 1.07 16 20 O -0.50 -5.61 13.50 -19.44 -0.26 -5.87 16 21 C -0.15 -2.12 9.99 -39.43 -0.39 -2.51 16 22 C -0.07 -1.09 9.38 -39.60 -0.37 -1.46 16 23 O -0.36 -7.33 9.51 -59.04 -0.56 -7.90 16 24 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.07 1.31 8.04 -51.93 -0.42 0.89 16 29 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 30 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 31 H 0.39 2.32 9.06 45.56 0.41 2.73 16 32 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 33 H 0.14 2.54 7.00 -52.49 -0.37 2.18 16 LS Contribution 289.08 15.07 4.36 4.36 Total: -1.00 -31.51 289.08 -7.28 -38.79 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -3.30 Total: 2.20 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -2.57 Total: -15.02 kcal Atomic # 7 Polarization: -26.29 SS G_CDS: 0.74 Total: -25.55 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -1.48 Total: -21.21 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.51 -7.28 -38.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259982503.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.888 kcal (2) G-P(sol) polarization free energy of solvation -31.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds