Wall clock time and date at job start Mon Mar 30 2020 05:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99730 * 2 1 4 4 H 1.48501 * 109.47268 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47337 * 299.99731 * 3 2 1 6 6 H 1.48500 * 109.47330 * 60.00056 * 3 2 1 7 7 C 1.37879 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99936 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99678 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46839 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.86199 * 308.81330 * 10 9 7 12 12 C 1.54911 * 110.97811 * 185.00414 * 10 9 7 13 13 O 1.44195 * 103.07456 * 206.33148 * 12 10 9 14 14 C 1.43366 * 107.29106 * 21.43523 * 13 12 10 15 15 H 1.08999 * 109.62587 * 240.94008 * 14 13 12 16 16 C 1.50696 * 109.63223 * 120.54874 * 14 13 12 17 17 C 1.38267 * 119.94661 * 61.45241 * 16 14 13 18 18 C 1.38136 * 120.05830 * 179.97438 * 17 16 14 19 19 C 1.38733 * 119.94322 * 0.02562 * 18 17 16 20 20 O 1.35905 * 120.05429 * 179.97438 * 19 18 17 21 21 C 1.38723 * 119.89013 * 0.27339 * 19 18 17 22 22 C 1.38152 * 119.94281 * 359.47128 * 21 19 18 23 23 O 1.43755 * 108.79132 * 0.66871 * 14 13 12 24 24 H 0.96991 * 120.00211 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47245 * 60.00685 * 9 7 2 26 26 H 1.08998 * 109.47384 * 300.00233 * 9 7 2 27 27 H 1.09003 * 110.69919 * 87.93187 * 12 10 9 28 28 H 1.09001 * 110.69787 * 324.72516 * 12 10 9 29 29 H 1.08006 * 119.96706 * 0.02562 * 17 16 14 30 30 H 1.08002 * 120.03123 * 179.97438 * 18 17 16 31 31 H 0.96705 * 113.99576 * 90.00115 * 20 19 18 32 32 H 1.08005 * 120.03367 * 179.72206 * 21 19 18 33 33 H 1.07997 * 119.97523 * 180.27923 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 1 2.9835 -3.5426 -0.7913 12 6 1.5107 -5.0200 -0.1243 13 8 2.4192 -5.9426 0.5102 14 6 3.2697 -5.1771 1.3739 15 1 4.3070 -5.2872 1.0578 16 6 3.1186 -5.6618 2.7928 17 6 3.4467 -6.9657 3.1153 18 6 3.3096 -7.4124 4.4152 19 6 2.8418 -6.5516 5.3975 20 8 2.7055 -6.9888 6.6771 21 6 2.5074 -5.2456 5.0702 22 6 2.6513 -4.8022 3.7697 23 8 2.8874 -3.7937 1.2929 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8898 26 1 0.6240 -2.5567 0.8902 27 1 1.3640 -5.2829 -1.1720 28 1 0.5577 -4.9930 0.4042 29 1 3.8112 -7.6353 2.3502 30 1 3.5655 -8.4311 4.6666 31 1 3.4949 -6.8637 7.2216 32 1 2.1388 -4.5748 5.8322 33 1 2.3955 -3.7843 3.5152 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259982503.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:27 Heat of formation + Delta-G solvation = -133.339240 kcal Electronic energy + Delta-G solvation = -17875.061784 eV Core-core repulsion = 14865.017995 eV Total energy + Delta-G solvation = -3010.043789 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.60496 -40.35697 -37.66703 -36.21845 -35.24177 -33.07034 -31.98136 -31.05280 -28.51865 -25.85027 -25.04545 -23.80895 -22.54537 -22.09961 -19.36883 -18.86795 -18.09088 -17.83533 -17.20370 -16.63221 -16.30506 -16.19601 -15.90093 -15.22946 -14.80416 -14.63248 -14.38926 -13.86284 -13.83729 -13.52031 -13.15060 -13.08740 -12.95624 -12.86344 -12.55667 -12.33627 -11.69897 -11.41653 -11.21097 -10.99497 -10.67717 -10.60544 -9.98566 -9.59090 -8.22489 -6.31867 0.13450 0.35996 1.39345 1.40591 1.53409 2.40015 2.41839 2.68208 2.97940 3.13434 3.26191 3.68680 3.88187 3.94685 4.05257 4.07477 4.22381 4.32305 4.44205 4.58898 4.66824 4.75736 4.85278 4.99175 5.04742 5.27372 5.33768 5.39878 5.47348 5.59938 5.74056 5.83177 6.12733 6.20918 6.80036 6.84281 7.36287 8.89523 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.027420 B = 0.005255 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.922051 B = 5327.478266 C = 5945.868006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.963 3.037 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.281 1.281 7 C -0.533 4.533 8 H 0.056 0.944 9 C 0.033 3.967 10 C 0.062 3.938 11 H 0.084 0.916 12 C 0.030 3.970 13 O -0.387 6.387 14 C 0.266 3.734 15 H 0.107 0.893 16 C -0.134 4.134 17 C -0.076 4.076 18 C -0.148 4.148 19 C 0.110 3.890 20 O -0.506 6.506 21 C -0.159 4.159 22 C -0.088 4.088 23 O -0.382 6.382 24 H 0.265 0.735 25 H 0.027 0.973 26 H -0.001 1.001 27 H 0.126 0.874 28 H 0.065 0.935 29 H 0.148 0.852 30 H 0.157 0.843 31 H 0.412 0.588 32 H 0.137 0.863 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.174 -14.018 7.257 17.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.788 3.212 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.206 1.206 7 C -0.571 4.571 8 H 0.075 0.925 9 C -0.004 4.004 10 C 0.006 3.994 11 H 0.102 0.898 12 C -0.046 4.046 13 O -0.309 6.309 14 C 0.171 3.829 15 H 0.124 0.876 16 C -0.135 4.135 17 C -0.094 4.094 18 C -0.166 4.166 19 C 0.066 3.934 20 O -0.320 6.320 21 C -0.177 4.177 22 C -0.107 4.107 23 O -0.303 6.303 24 H 0.073 0.927 25 H 0.045 0.955 26 H 0.017 0.983 27 H 0.143 0.857 28 H 0.083 0.917 29 H 0.166 0.834 30 H 0.175 0.825 31 H 0.272 0.728 32 H 0.155 0.845 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 7.523 -14.117 7.220 17.550 hybrid contribution 0.398 1.421 0.101 1.479 sum 7.921 -12.695 7.322 16.659 Atomic orbital electron populations 1.70069 1.07594 1.27810 1.51653 1.25873 0.95726 1.03087 0.94717 0.85426 0.78996 0.78980 0.77819 1.18940 1.19997 1.20639 1.21501 0.93310 0.91871 1.50424 0.92538 1.18988 0.93312 0.91609 0.96485 1.24100 0.94714 0.95957 0.84658 0.89849 1.24331 0.93059 0.87169 1.00044 1.88788 1.49152 1.32890 1.60044 1.22780 0.94743 0.77302 0.88111 0.87626 1.20232 1.03003 0.95743 0.94519 1.20971 0.97671 0.93880 0.96855 1.21606 1.01271 1.01304 0.92446 1.18573 0.97975 0.91286 0.85571 1.84761 1.43431 1.84101 1.19679 1.21560 1.03027 0.96244 0.96916 1.20985 0.96850 1.00106 0.92738 1.89301 1.78384 1.25027 1.37589 0.92664 0.95492 0.98297 0.85658 0.91669 0.83381 0.82510 0.72828 0.84513 0.86700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.80 13.29 21.45 0.28 -55.51 16 2 C 0.00 0.22 5.46 84.65 0.46 0.69 16 3 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 7 C -0.53 -30.15 9.07 25.60 0.23 -29.92 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 9 C 0.03 1.70 4.75 29.85 0.14 1.85 16 10 C 0.06 2.58 3.41 31.25 0.11 2.68 16 11 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 12 C 0.03 1.03 7.54 72.64 0.55 1.58 16 13 O -0.39 -12.99 11.11 -126.22 -1.40 -14.40 16 14 C 0.27 8.96 4.30 71.23 0.31 9.27 16 15 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 16 C -0.13 -4.21 5.56 -19.85 -0.11 -4.32 16 17 C -0.08 -1.88 9.63 22.25 0.21 -1.66 16 18 C -0.15 -3.24 9.99 22.36 0.22 -3.01 16 19 C 0.11 2.64 6.70 22.50 0.15 2.79 16 20 O -0.51 -9.81 13.50 -92.48 -1.25 -11.06 16 21 C -0.16 -4.42 9.99 22.37 0.22 -4.20 16 22 C -0.09 -2.93 9.38 22.26 0.21 -2.72 16 23 O -0.38 -16.07 9.51 -126.22 -1.20 -17.27 16 24 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 25 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 27 H 0.13 3.51 8.14 -2.39 -0.02 3.49 16 28 H 0.07 2.34 8.04 -2.39 -0.02 2.32 16 29 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 30 H 0.16 2.48 8.06 -2.91 -0.02 2.45 16 31 H 0.41 3.57 9.06 -74.05 -0.67 2.90 16 32 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 33 H 0.11 4.39 7.00 -2.91 -0.02 4.37 16 Total: -1.00 -68.23 289.08 1.62 -66.62 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 0.45 Total: 12.27 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: 2.71 Total: -26.99 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.28 Total: -55.51 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -3.85 Total: -42.73 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -68.23 1.62 -66.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259982503.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.723 kcal (2) G-P(sol) polarization free energy of solvation -68.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds