Wall clock time and date at job start Mon Mar 30 2020 05:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99945 * 2 1 4 4 H 1.48499 * 109.47341 * 270.00148 * 3 2 1 5 5 H 1.48503 * 109.47534 * 30.00120 * 3 2 1 6 6 H 1.48502 * 109.46963 * 149.99940 * 3 2 1 7 7 C 1.37875 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99875 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99892 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46902 * 179.97438 * 9 7 2 11 11 H 1.08996 * 110.61950 * 303.37713 * 10 9 7 12 12 C 1.54913 * 110.84361 * 180.19608 * 10 9 7 13 13 O 1.44785 * 101.72043 * 205.97444 * 12 10 9 14 14 C 1.43752 * 104.81900 * 36.10403 * 13 12 10 15 15 H 1.08999 * 109.63139 * 95.56049 * 14 13 12 16 16 C 1.50693 * 109.63380 * 215.80935 * 14 13 12 17 17 C 1.38268 * 119.94419 * 119.08783 * 16 14 13 18 18 C 1.38147 * 120.05291 * 179.72540 * 17 16 14 19 19 C 1.38734 * 119.94520 * 0.55107 * 18 17 16 20 20 O 1.35903 * 120.05784 * 179.74774 * 19 18 17 21 21 C 1.38733 * 119.88934 * 359.72061 * 19 18 17 22 22 C 1.38155 * 119.94303 * 0.02562 * 21 19 18 23 23 O 1.43375 * 108.78880 * 335.68545 * 14 13 12 24 24 H 0.97005 * 119.99931 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47222 * 59.99972 * 9 7 2 26 26 H 1.08995 * 109.47269 * 299.99607 * 9 7 2 27 27 H 1.08999 * 110.97383 * 324.07825 * 12 10 9 28 28 H 1.08996 * 110.98005 * 87.86405 * 12 10 9 29 29 H 1.07999 * 119.97356 * 0.02562 * 17 16 14 30 30 H 1.08000 * 120.02764 * 180.26887 * 18 17 16 31 31 H 0.96702 * 113.99780 * 269.97555 * 20 19 18 32 32 H 1.07995 * 120.03139 * 179.97438 * 21 19 18 33 33 H 1.07993 * 119.97503 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 1 2.9212 -3.5884 -0.8546 12 6 1.5030 -5.0218 -0.0089 13 8 2.4791 -5.8925 0.6118 14 6 3.1167 -5.0777 1.6098 15 1 2.6387 -5.2406 2.5757 16 6 4.5763 -5.4406 1.7029 17 6 5.5427 -4.4892 1.4329 18 6 6.8814 -4.8180 1.5231 19 6 7.2559 -6.1070 1.8738 20 8 8.5722 -6.4342 1.9582 21 6 6.2844 -7.0612 2.1387 22 6 4.9469 -6.7261 2.0522 23 8 2.9859 -3.7003 1.2338 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5562 -0.8919 26 1 0.6240 -2.5575 0.8880 27 1 0.5910 -4.9712 0.5860 28 1 1.2853 -5.3430 -1.0275 29 1 5.2506 -3.4870 1.1560 30 1 7.6359 -4.0734 1.3164 31 1 8.9499 -6.7621 1.1305 32 1 6.5733 -8.0654 2.4115 33 1 4.1902 -7.4684 2.2587 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259982506.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:33 Heat of formation + Delta-G solvation = -111.014020 kcal Electronic energy + Delta-G solvation = -17875.890979 eV Core-core repulsion = 14866.815284 eV Total energy + Delta-G solvation = -3009.075695 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.28308 -39.24520 -36.67644 -34.68835 -33.25903 -31.44999 -30.92537 -29.61436 -26.75837 -24.50840 -23.32095 -22.63213 -21.32225 -20.58295 -18.44013 -17.19560 -16.50226 -16.29885 -15.62214 -15.26000 -15.20987 -14.91726 -14.46718 -13.88757 -13.48359 -13.17507 -12.93634 -12.37500 -12.24808 -12.01555 -11.88325 -11.71594 -11.41964 -11.17846 -10.60284 -10.52789 -10.43846 -9.81028 -9.70520 -9.17902 -9.00033 -8.93657 -8.51347 -8.41979 -6.04817 -4.05971 1.18255 1.41140 3.31199 3.37706 3.42384 3.54553 4.02116 4.17713 4.31260 4.43850 4.95444 4.99849 5.14286 5.26953 5.33566 5.45694 5.48666 5.53204 5.71813 5.74103 5.84032 6.02628 6.08786 6.28502 6.38921 6.45660 6.62891 6.71937 6.83839 7.33093 7.53226 7.56281 7.74564 7.92280 8.32152 8.97921 9.57596 11.06807 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.026698 B = 0.005446 C = 0.004632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.497751 B = 5140.015340 C = 6043.737271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.511 4.511 8 H 0.059 0.941 9 C 0.023 3.977 10 C 0.063 3.937 11 H 0.073 0.927 12 C 0.017 3.983 13 O -0.384 6.384 14 C 0.269 3.731 15 H 0.088 0.912 16 C -0.112 4.112 17 C -0.068 4.068 18 C -0.150 4.150 19 C 0.102 3.898 20 O -0.502 6.502 21 C -0.154 4.154 22 C -0.080 4.080 23 O -0.359 6.359 24 H 0.261 0.739 25 H 0.035 0.965 26 H 0.028 0.972 27 H 0.076 0.924 28 H 0.102 0.898 29 H 0.143 0.857 30 H 0.129 0.871 31 H 0.388 0.612 32 H 0.127 0.873 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.738 -13.241 1.393 16.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.549 4.549 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.006 3.994 11 H 0.091 0.909 12 C -0.059 4.059 13 O -0.305 6.305 14 C 0.174 3.826 15 H 0.105 0.895 16 C -0.112 4.112 17 C -0.086 4.086 18 C -0.169 4.169 19 C 0.058 3.942 20 O -0.312 6.312 21 C -0.172 4.172 22 C -0.099 4.099 23 O -0.280 6.280 24 H 0.071 0.929 25 H 0.053 0.947 26 H 0.046 0.954 27 H 0.094 0.906 28 H 0.121 0.879 29 H 0.161 0.839 30 H 0.147 0.853 31 H 0.243 0.757 32 H 0.145 0.855 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.651 -12.986 2.051 16.309 hybrid contribution 0.410 0.766 -0.507 1.006 sum 10.061 -12.220 1.543 15.904 Atomic orbital electron populations 1.69947 1.06052 1.26766 1.50953 1.24989 0.94853 0.99317 0.95268 0.86552 0.79931 0.83258 0.78056 1.20685 1.21227 1.19787 1.21074 0.93175 0.90346 1.50354 0.92320 1.19280 0.92959 0.90805 0.98338 1.24113 0.93574 0.95849 0.85843 0.90948 1.24607 0.92624 0.89533 0.99167 1.89144 1.52756 1.35812 1.52803 1.22558 0.89045 0.78519 0.92519 0.89530 1.20252 0.95316 0.94319 1.01322 1.21116 0.91216 1.00643 0.95661 1.21449 0.96740 0.96411 1.02278 1.18526 0.83181 0.92671 0.99849 1.84813 1.21391 1.86609 1.38379 1.21305 0.92657 0.99535 1.03732 1.20797 0.95510 0.95652 0.97900 1.89011 1.76235 1.21386 1.41390 0.92925 0.94723 0.95394 0.90616 0.87948 0.83915 0.85339 0.75679 0.85536 0.85436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.40 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.51 -14.20 8.95 -34.44 -0.31 -14.50 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.02 0.57 4.76 -27.88 -0.13 0.44 16 10 C 0.06 1.28 3.61 -25.72 -0.09 1.19 16 11 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 12 C 0.02 0.28 7.41 38.17 0.28 0.56 16 13 O -0.38 -6.56 11.23 -59.04 -0.66 -7.22 16 14 C 0.27 4.64 4.30 36.00 0.15 4.79 16 15 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 16 C -0.11 -1.76 5.57 -104.60 -0.58 -2.34 16 17 C -0.07 -1.07 9.38 -39.60 -0.37 -1.44 16 18 C -0.15 -2.06 9.99 -39.43 -0.39 -2.45 16 19 C 0.10 1.30 6.71 -39.22 -0.26 1.04 16 20 O -0.50 -5.48 13.50 -19.43 -0.26 -5.75 16 21 C -0.15 -1.89 9.99 -39.43 -0.39 -2.29 16 22 C -0.08 -1.08 9.62 -39.60 -0.38 -1.46 16 23 O -0.36 -7.43 9.23 -59.04 -0.55 -7.98 16 24 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 1.23 8.05 -51.93 -0.42 0.81 16 28 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.14 2.42 7.00 -52.49 -0.37 2.06 16 30 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 31 H 0.39 2.30 9.06 45.56 0.41 2.71 16 32 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 288.90 15.07 4.35 4.35 Total: -1.00 -31.60 288.90 -7.28 -38.88 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -3.30 Total: 1.78 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -2.58 Total: -14.96 kcal Atomic # 7 Polarization: -26.40 SS G_CDS: 0.74 Total: -25.66 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -1.47 Total: -20.95 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.60 -7.28 -38.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259982506.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.134 kcal (2) G-P(sol) polarization free energy of solvation -31.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds