Wall clock time and date at job start Mon Mar 30 2020 05:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99945 * 2 1 4 4 H 1.48499 * 109.47341 * 270.00148 * 3 2 1 5 5 H 1.48503 * 109.47534 * 30.00120 * 3 2 1 6 6 H 1.48502 * 109.46963 * 149.99940 * 3 2 1 7 7 C 1.37875 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99875 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99892 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46902 * 179.97438 * 9 7 2 11 11 H 1.08996 * 110.61950 * 303.37713 * 10 9 7 12 12 C 1.54913 * 110.84361 * 180.19608 * 10 9 7 13 13 O 1.44785 * 101.72043 * 205.97444 * 12 10 9 14 14 C 1.43752 * 104.81900 * 36.10403 * 13 12 10 15 15 H 1.08999 * 109.63139 * 95.56049 * 14 13 12 16 16 C 1.50693 * 109.63380 * 215.80935 * 14 13 12 17 17 C 1.38268 * 119.94419 * 119.08783 * 16 14 13 18 18 C 1.38147 * 120.05291 * 179.72540 * 17 16 14 19 19 C 1.38734 * 119.94520 * 0.55107 * 18 17 16 20 20 O 1.35903 * 120.05784 * 179.74774 * 19 18 17 21 21 C 1.38733 * 119.88934 * 359.72061 * 19 18 17 22 22 C 1.38155 * 119.94303 * 0.02562 * 21 19 18 23 23 O 1.43375 * 108.78880 * 335.68545 * 14 13 12 24 24 H 0.97005 * 119.99931 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47222 * 59.99972 * 9 7 2 26 26 H 1.08995 * 109.47269 * 299.99607 * 9 7 2 27 27 H 1.08999 * 110.97383 * 324.07825 * 12 10 9 28 28 H 1.08996 * 110.98005 * 87.86405 * 12 10 9 29 29 H 1.07999 * 119.97356 * 0.02562 * 17 16 14 30 30 H 1.08000 * 120.02764 * 180.26887 * 18 17 16 31 31 H 0.96702 * 113.99780 * 269.97555 * 20 19 18 32 32 H 1.07995 * 120.03139 * 179.97438 * 21 19 18 33 33 H 1.07993 * 119.97503 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 1 2.9212 -3.5884 -0.8546 12 6 1.5030 -5.0218 -0.0089 13 8 2.4791 -5.8925 0.6118 14 6 3.1167 -5.0777 1.6098 15 1 2.6387 -5.2406 2.5757 16 6 4.5763 -5.4406 1.7029 17 6 5.5427 -4.4892 1.4329 18 6 6.8814 -4.8180 1.5231 19 6 7.2559 -6.1070 1.8738 20 8 8.5722 -6.4342 1.9582 21 6 6.2844 -7.0612 2.1387 22 6 4.9469 -6.7261 2.0522 23 8 2.9859 -3.7003 1.2338 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5562 -0.8919 26 1 0.6240 -2.5575 0.8880 27 1 0.5910 -4.9712 0.5860 28 1 1.2853 -5.3430 -1.0275 29 1 5.2506 -3.4870 1.1560 30 1 7.6359 -4.0734 1.3164 31 1 8.9499 -6.7621 1.1305 32 1 6.5733 -8.0654 2.4115 33 1 4.1902 -7.4684 2.2587 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259982506.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:33 Heat of formation + Delta-G solvation = -132.680116 kcal Electronic energy + Delta-G solvation = -17876.830491 eV Core-core repulsion = 14866.815284 eV Total energy + Delta-G solvation = -3010.015207 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.61084 -40.34916 -37.65844 -36.22805 -35.21142 -33.05801 -31.97529 -31.02168 -28.48088 -25.83204 -25.07161 -23.74602 -22.57082 -22.16874 -19.37727 -18.69026 -18.30163 -17.81757 -16.99243 -16.53056 -16.33853 -16.23960 -16.10669 -15.18947 -14.83081 -14.49725 -14.27995 -13.90882 -13.73746 -13.67104 -13.14181 -13.12897 -12.89871 -12.84334 -12.49450 -12.36375 -11.73629 -11.40035 -11.23582 -11.04806 -10.60896 -10.56418 -9.98364 -9.58138 -8.21373 -6.29622 0.13361 0.36278 1.39458 1.40716 1.51879 2.39821 2.41479 2.72080 2.98485 3.14783 3.27010 3.71689 3.86709 3.95243 4.05261 4.09017 4.22926 4.29732 4.43786 4.58742 4.65631 4.75412 4.85386 5.01063 5.05446 5.27590 5.33251 5.40031 5.51221 5.61123 5.75245 5.82781 6.14040 6.26205 6.81802 6.84033 7.37941 8.90402 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.026698 B = 0.005446 C = 0.004632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.497751 B = 5140.015340 C = 6043.737271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.960 3.040 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.530 4.530 8 H 0.053 0.947 9 C 0.028 3.972 10 C 0.066 3.934 11 H 0.071 0.929 12 C 0.026 3.974 13 O -0.381 6.381 14 C 0.266 3.734 15 H 0.097 0.903 16 C -0.133 4.133 17 C -0.087 4.087 18 C -0.157 4.157 19 C 0.110 3.890 20 O -0.506 6.506 21 C -0.148 4.148 22 C -0.078 4.078 23 O -0.385 6.385 24 H 0.264 0.736 25 H 0.025 0.975 26 H 0.003 0.997 27 H 0.080 0.920 28 H 0.131 0.869 29 H 0.119 0.881 30 H 0.140 0.860 31 H 0.412 0.588 32 H 0.156 0.844 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.265 -14.545 1.470 18.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.193 4.193 3 Si 0.785 3.215 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.568 4.568 8 H 0.071 0.929 9 C -0.009 4.009 10 C 0.009 3.991 11 H 0.089 0.911 12 C -0.050 4.050 13 O -0.302 6.302 14 C 0.171 3.829 15 H 0.114 0.886 16 C -0.133 4.133 17 C -0.105 4.105 18 C -0.175 4.175 19 C 0.066 3.934 20 O -0.320 6.320 21 C -0.167 4.167 22 C -0.096 4.096 23 O -0.306 6.306 24 H 0.073 0.927 25 H 0.043 0.957 26 H 0.021 0.979 27 H 0.099 0.901 28 H 0.149 0.851 29 H 0.137 0.863 30 H 0.158 0.842 31 H 0.271 0.729 32 H 0.173 0.827 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 11.196 -14.311 2.110 18.293 hybrid contribution 0.013 1.109 -0.505 1.218 sum 11.209 -13.203 1.605 17.393 Atomic orbital electron populations 1.70054 1.07465 1.27790 1.51789 1.25833 0.95731 1.02922 0.94844 0.85523 0.78558 0.78891 0.78554 1.19475 1.20680 1.19511 1.21436 0.93200 0.91989 1.50206 0.92887 1.19106 0.93352 0.91863 0.96539 1.23853 0.93038 0.96226 0.85995 0.91112 1.24573 0.92133 0.87333 1.00930 1.89139 1.52765 1.35504 1.52773 1.22737 0.90519 0.76957 0.92695 0.88594 1.20205 0.94157 0.95585 1.03370 1.20987 0.92434 0.99818 0.97302 1.21565 0.96040 0.97517 1.02399 1.18575 0.84161 0.92214 0.98490 1.84756 1.20304 1.86651 1.40242 1.21603 0.91895 1.00709 1.02450 1.20985 0.96680 0.94830 0.97117 1.88972 1.76329 1.23942 1.41361 0.92689 0.95667 0.97898 0.90134 0.85140 0.86340 0.84242 0.72863 0.82651 0.83656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.62 13.29 21.45 0.28 -55.34 16 2 C 0.00 0.26 5.46 84.65 0.46 0.72 16 3 Si 0.96 44.64 29.54 68.60 2.03 46.67 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 7 C -0.53 -30.17 8.95 25.60 0.23 -29.94 16 8 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 9 C 0.03 1.45 4.76 29.85 0.14 1.60 16 10 C 0.07 2.73 3.61 31.25 0.11 2.84 16 11 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 12 C 0.03 0.86 7.41 72.64 0.54 1.39 16 13 O -0.38 -12.54 11.23 -126.22 -1.42 -13.95 16 14 C 0.27 9.11 4.30 71.23 0.31 9.42 16 15 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 16 C -0.13 -4.10 5.57 -19.85 -0.11 -4.21 16 17 C -0.09 -2.76 9.38 22.26 0.21 -2.55 16 18 C -0.16 -4.14 9.99 22.37 0.22 -3.91 16 19 C 0.11 2.54 6.71 22.51 0.15 2.69 16 20 O -0.51 -9.41 13.50 -92.46 -1.25 -10.66 16 21 C -0.15 -3.19 9.99 22.37 0.22 -2.97 16 22 C -0.08 -1.93 9.62 22.26 0.21 -1.72 16 23 O -0.38 -16.32 9.23 -126.22 -1.17 -17.49 16 24 H 0.26 14.87 8.31 -92.70 -0.77 14.10 16 25 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 27 H 0.08 2.57 8.05 -2.39 -0.02 2.55 16 28 H 0.13 3.53 8.14 -2.39 -0.02 3.51 16 29 H 0.12 4.25 7.00 -2.91 -0.02 4.23 16 30 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 31 H 0.41 3.42 9.06 -74.06 -0.67 2.75 16 32 H 0.16 2.44 8.06 -2.91 -0.02 2.41 16 33 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -67.96 288.90 1.63 -66.33 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 0.45 Total: 11.08 kcal Atomic # 6 Polarization: -29.34 SS G_CDS: 2.70 Total: -26.64 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: 0.28 Total: -55.34 kcal Atomic # 8 Polarization: -38.27 SS G_CDS: -3.83 Total: -42.10 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -67.96 1.63 -66.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259982506.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.349 kcal (2) G-P(sol) polarization free energy of solvation -67.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds