Wall clock time and date at job start Mon Mar 30 2020 05:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.39862 * 125.42501 * 2 1 4 4 C 1.30526 * 110.05241 * 179.80494 * 3 2 1 5 5 O 1.35936 * 126.14793 * 180.13218 * 4 3 2 6 6 C 1.42905 * 116.99943 * 0.36840 * 5 4 3 7 7 C 1.50698 * 109.47012 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00032 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99893 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99816 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99668 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47155 * 60.00387 * 11 9 7 13 13 H 1.48503 * 109.46745 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47197 * 299.99942 * 11 9 7 15 15 C 1.46261 * 107.69791 * 0.44522 * 4 3 2 16 16 C 1.39881 * 133.98800 * 179.71828 * 15 4 3 17 17 C 1.36667 * 119.62229 * 180.02562 * 16 15 4 18 18 F 1.35093 * 119.71960 * 180.02562 * 17 16 15 19 19 C 1.39148 * 120.56553 * 359.97438 * 17 16 15 20 20 C 1.36579 * 120.78147 * 0.06619 * 19 17 16 21 21 C 1.37139 * 125.42199 * 180.30601 * 2 1 3 22 22 H 1.08999 * 109.46892 * 269.69697 * 1 2 3 23 23 H 1.09000 * 109.46803 * 29.68871 * 1 2 3 24 24 H 1.09000 * 109.47214 * 149.69664 * 1 2 3 25 25 H 1.08994 * 109.47341 * 300.00124 * 6 5 4 26 26 H 1.09005 * 109.46526 * 60.00337 * 6 5 4 27 27 H 0.96998 * 119.99602 * 179.97438 * 10 9 7 28 28 H 1.07993 * 120.18875 * 359.97438 * 16 15 4 29 29 H 1.07996 * 119.60790 * 180.02562 * 19 17 16 30 30 H 1.08005 * 120.05745 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2758 1.1397 0.0000 4 6 3.5343 0.7937 0.0042 5 8 4.5984 1.6395 0.0080 6 6 4.3140 3.0400 0.0156 7 6 5.6064 3.8150 0.0195 8 1 6.5506 3.2906 0.0161 9 6 5.5835 5.1936 0.0274 10 7 4.4338 5.8321 0.0321 11 14 7.1856 6.1542 0.0316 12 1 7.9690 5.8155 -1.1836 13 1 6.8900 7.6095 0.0408 14 1 7.9711 5.8015 1.2414 15 6 3.5937 -0.6677 -0.0036 16 6 4.6387 -1.5975 -0.0086 17 6 4.3537 -2.9341 -0.0163 18 9 5.3614 -3.8338 -0.0206 19 6 3.0343 -3.3762 -0.0185 20 6 1.9987 -2.4858 -0.0145 21 6 2.2599 -1.1175 -0.0060 22 1 -0.3633 -0.0054 1.0277 23 1 -0.3633 0.8928 -0.5090 24 1 -0.3633 -0.8872 -0.5185 25 1 3.7376 3.2985 -0.8726 26 1 3.7387 3.2890 0.9073 27 1 4.4177 6.8019 0.0381 28 1 5.6649 -1.2611 -0.0073 29 1 2.8267 -4.4360 -0.0241 30 1 0.9791 -2.8418 -0.0159 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259983520.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:03 Heat of formation + Delta-G solvation = -15.835331 kcal Electronic energy + Delta-G solvation = -17267.177577 eV Core-core repulsion = 14171.061586 eV Total energy + Delta-G solvation = -3096.115991 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.086 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.78049 -42.37453 -39.42059 -37.84049 -35.17452 -33.92560 -31.45673 -30.64196 -29.96830 -26.93200 -25.29203 -24.16557 -23.05284 -21.65391 -19.25101 -18.81452 -18.43683 -17.54754 -17.23908 -16.92294 -16.48220 -16.45075 -16.04642 -15.80046 -15.16095 -14.93797 -14.23871 -13.99123 -13.81905 -13.80362 -13.21732 -13.11028 -13.03109 -12.59015 -12.30263 -12.22098 -11.88539 -11.69037 -11.52206 -10.84421 -10.55288 -9.81677 -8.63882 -8.42163 -6.59118 -0.21041 0.25627 1.30954 1.38899 1.40705 1.43774 1.52446 2.14212 2.42631 2.54261 2.92061 3.23885 3.43113 3.50908 3.90243 4.10321 4.24478 4.43319 4.45435 4.49169 4.69757 4.72478 4.87489 4.89305 5.04334 5.08249 5.13093 5.44342 5.70398 5.75651 6.08050 6.38674 6.48118 6.69271 7.12717 8.70206 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.026854 B = 0.005352 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.421746 B = 5230.466918 C = 6252.441000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.398 5.398 3 N -0.339 5.339 4 C 0.261 3.739 5 O -0.305 6.305 6 C 0.222 3.778 7 C -0.562 4.562 8 H 0.071 0.929 9 C 0.012 3.988 10 N -0.926 5.926 11 Si 0.994 3.006 12 H -0.262 1.262 13 H -0.272 1.272 14 H -0.262 1.262 15 C -0.182 4.182 16 C -0.080 4.080 17 C 0.047 3.953 18 F -0.144 7.144 19 C -0.080 4.080 20 C -0.100 4.100 21 C 0.134 3.866 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.126 0.874 25 H -0.002 1.002 26 H -0.002 1.002 27 H 0.275 0.725 28 H 0.132 0.868 29 H 0.186 0.814 30 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.007 -18.676 -0.196 20.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.190 5.190 3 N -0.173 5.173 4 C 0.047 3.953 5 O -0.207 6.207 6 C 0.149 3.851 7 C -0.599 4.599 8 H 0.090 0.910 9 C -0.188 4.188 10 N -0.563 5.563 11 Si 0.815 3.185 12 H -0.187 1.187 13 H -0.196 1.196 14 H -0.187 1.187 15 C -0.191 4.191 16 C -0.101 4.101 17 C 0.026 3.974 18 F -0.123 7.123 19 C -0.100 4.100 20 C -0.121 4.121 21 C 0.016 3.984 22 H 0.103 0.897 23 H 0.101 0.899 24 H 0.145 0.855 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.084 0.916 28 H 0.150 0.850 29 H 0.203 0.797 30 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -8.692 -17.500 -0.194 19.541 hybrid contribution 1.251 0.647 0.025 1.408 sum -7.442 -16.853 -0.169 18.424 Atomic orbital electron populations 1.22187 0.70837 1.06009 1.04561 1.48086 1.06839 0.99242 1.64822 1.76866 1.01497 1.10396 1.28562 1.22184 0.86810 0.89928 0.96334 1.86263 1.26839 1.20073 1.87547 1.20130 0.97638 0.72311 0.95071 1.21284 0.92337 0.91898 1.54429 0.91037 1.26045 1.01785 0.97781 0.93144 1.70089 1.27584 1.09654 1.49018 0.85086 0.77047 0.76746 0.79637 1.18680 1.19640 1.18696 1.19049 0.95079 0.88621 1.16354 1.20313 0.99288 0.91400 0.99147 1.17092 0.86045 0.85152 1.09116 1.91477 1.59699 1.66467 1.94650 1.21108 0.88693 1.02742 0.97500 1.20113 1.02270 0.85742 1.04003 1.19247 0.88373 0.91248 0.99487 0.89721 0.89900 0.85542 0.98403 0.98437 0.91600 0.85014 0.79669 0.79592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.94 11.39 127.77 1.46 3.39 16 2 N -0.40 -12.74 4.05 -360.99 -1.46 -14.20 16 3 N -0.34 -15.20 11.81 -166.92 -1.97 -17.17 16 4 C 0.26 12.33 8.14 86.97 0.71 13.04 16 5 O -0.30 -16.65 10.20 -92.83 -0.95 -17.60 16 6 C 0.22 13.35 5.38 71.24 0.38 13.73 16 7 C -0.56 -34.28 9.43 25.60 0.24 -34.03 16 8 H 0.07 4.23 7.81 -2.91 -0.02 4.20 16 9 C 0.01 0.71 5.46 84.66 0.46 1.17 16 10 N -0.93 -56.51 13.29 21.45 0.28 -56.23 16 11 Si 0.99 44.41 29.54 68.60 2.03 46.44 16 12 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 13 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 14 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 15 C -0.18 -6.83 6.37 -20.18 -0.13 -6.95 16 16 C -0.08 -2.60 10.03 22.30 0.22 -2.38 16 17 C 0.05 1.18 7.24 22.12 0.16 1.34 16 18 F -0.14 -3.65 17.25 44.97 0.78 -2.88 16 19 C -0.08 -1.39 9.94 22.10 0.22 -1.17 16 20 C -0.10 -1.78 9.96 22.14 0.22 -1.56 16 21 C 0.13 3.91 6.87 39.18 0.27 4.18 16 22 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.13 1.22 8.13 -2.39 -0.02 1.20 16 25 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 26 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 27 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 28 H 0.13 4.37 8.06 -2.91 -0.02 4.34 16 29 H 0.19 1.62 8.06 -2.91 -0.02 1.60 16 30 H 0.19 1.46 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -76.72 278.67 4.08 -72.64 By element: Atomic # 1 Polarization: -2.93 SS G_CDS: 1.16 Total: -1.77 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 4.22 Total: -9.25 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -3.15 Total: -87.59 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.95 Total: -17.60 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.78 Total: -2.88 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -76.72 4.08 -72.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259983520.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.806 kcal (2) G-P(sol) polarization free energy of solvation -76.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds