Wall clock time and date at job start Mon Mar 30 2020 06:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35897 * 116.99849 * 2 1 4 4 C 1.38767 * 120.04314 * 5.33708 * 3 2 1 5 5 C 1.38134 * 119.99243 * 180.25434 * 4 3 2 6 6 C 1.38253 * 120.08132 * 359.74809 * 5 4 3 7 7 C 1.50700 * 119.95924 * 180.02562 * 6 5 4 8 8 C 1.38469 * 120.08381 * 359.97347 * 6 5 4 9 9 F 1.35099 * 119.99952 * 180.02562 * 8 6 5 10 10 C 1.38386 * 120.00616 * 0.02562 * 8 6 5 11 11 C 1.50697 * 120.04032 * 180.02562 * 10 8 6 12 12 C 1.50709 * 115.56135 * 102.49666 * 11 10 8 13 13 H 1.07995 * 119.99927 * 140.25482 * 12 11 10 14 14 C 1.37879 * 119.99224 * 320.25723 * 12 11 10 15 15 N 1.31510 * 120.00820 * 4.15461 * 14 12 11 16 16 Si 1.86801 * 119.99325 * 184.16078 * 14 12 11 17 17 H 1.48499 * 109.47640 * 59.99892 * 16 14 12 18 18 H 1.48506 * 109.47076 * 179.97438 * 16 14 12 19 19 H 1.48509 * 109.47089 * 299.99484 * 16 14 12 20 20 C 1.52995 * 117.50495 * 316.80654 * 11 10 8 21 21 C 1.52993 * 60.00373 * 252.51029 * 20 11 10 22 22 H 1.09003 * 109.47301 * 295.39353 * 1 2 3 23 23 H 1.08995 * 109.47761 * 55.39796 * 1 2 3 24 24 H 1.08997 * 109.47124 * 175.39749 * 1 2 3 25 25 H 1.08000 * 120.00943 * 0.02562 * 4 3 2 26 26 H 1.07999 * 119.96025 * 179.76961 * 5 4 3 27 27 H 1.09003 * 109.47147 * 269.98040 * 7 6 5 28 28 H 1.08999 * 109.47118 * 29.97221 * 7 6 5 29 29 H 1.08994 * 109.47467 * 149.97322 * 7 6 5 30 30 H 0.96995 * 120.00633 * 184.98844 * 15 14 12 31 31 H 1.09011 * 117.49345 * 359.97438 * 20 11 10 32 32 H 1.08995 * 117.50426 * 145.01729 * 20 11 10 33 33 H 1.09001 * 117.49531 * 252.51027 * 21 20 11 34 34 H 1.08997 * 117.50345 * 107.48862 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2956 2.3729 0.1117 5 6 1.9234 3.6033 0.1063 6 6 3.2993 3.6788 -0.0051 7 6 3.9813 5.0226 -0.0101 8 6 4.0517 2.5212 -0.1109 9 9 5.3962 2.5969 -0.2192 10 6 3.4265 1.2866 -0.1059 11 6 4.2446 0.0262 -0.2205 12 6 4.4604 -0.7282 1.0662 13 1 4.4227 -1.8074 1.0722 14 6 4.7060 -0.0403 2.2356 15 7 4.6711 1.2744 2.2451 16 14 5.0886 -0.9757 3.8066 17 1 6.3107 -1.7959 3.6094 18 1 5.3130 -0.0123 4.9143 19 1 3.9465 -1.8627 4.1452 20 6 5.3790 0.0111 -1.2470 21 6 4.1034 -0.7934 -1.5047 22 1 -0.3634 0.4407 0.9284 23 1 -0.3634 0.5835 -0.8458 24 1 -0.3633 -1.0243 -0.0825 25 1 0.2207 2.3154 0.1992 26 1 1.3386 4.5075 0.1896 27 1 4.0611 5.3858 -1.0347 28 1 3.3978 5.7284 0.5810 29 1 4.9783 4.9258 0.4197 30 1 4.9144 1.7603 3.0486 31 1 5.5333 0.9128 -1.8398 32 1 6.2814 -0.5443 -0.9917 33 1 4.1667 -1.8782 -1.4189 34 1 3.4188 -0.4210 -2.2668 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259987446.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:24 Heat of formation + Delta-G solvation = -48.558165 kcal Electronic energy + Delta-G solvation = -19164.480965 eV Core-core repulsion = 16170.486348 eV Total energy + Delta-G solvation = -2993.994616 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.36039 -40.85791 -38.34438 -37.65995 -34.10645 -32.60080 -31.03266 -28.43092 -27.62860 -26.61030 -24.06822 -23.11114 -21.98825 -20.93310 -19.09704 -18.23306 -17.53482 -16.73881 -16.50480 -16.37119 -15.97029 -15.82859 -15.27718 -15.19133 -14.70407 -14.02051 -13.76860 -13.60224 -13.28657 -13.04061 -12.88961 -12.78636 -12.60427 -12.38388 -12.32445 -12.09715 -12.06583 -11.41393 -11.24842 -10.98104 -10.59137 -10.16305 -9.24568 -8.66962 -7.90014 -6.13102 0.65364 0.73406 1.40475 1.41284 1.48558 2.43133 2.64753 2.99473 3.07365 3.61415 3.88885 4.07917 4.13498 4.26101 4.39286 4.50498 4.53927 4.58010 4.67451 4.77421 4.85284 4.87321 4.89312 4.92695 5.10060 5.20431 5.24528 5.44209 5.49555 5.58206 5.68495 5.78132 5.81695 6.25793 6.38635 6.79078 6.88038 7.46434 8.97672 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.016772 B = 0.011595 C = 0.009968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.041399 B = 2414.244365 C = 2808.344348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.324 6.324 3 C 0.127 3.873 4 C -0.228 4.228 5 C -0.076 4.076 6 C -0.185 4.185 7 C -0.093 4.093 8 C 0.160 3.840 9 F -0.147 7.147 10 C -0.064 4.064 11 C 0.064 3.936 12 C -0.500 4.500 13 H 0.050 0.950 14 C 0.030 3.970 15 N -0.887 5.887 16 Si 0.949 3.051 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.274 1.274 20 C -0.200 4.200 21 C -0.174 4.174 22 H 0.055 0.945 23 H 0.068 0.932 24 H 0.111 0.889 25 H 0.152 0.848 26 H 0.159 0.841 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.045 0.955 30 H 0.256 0.744 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.131 4.960 -4.407 10.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.238 6.238 3 C 0.082 3.918 4 C -0.247 4.247 5 C -0.094 4.094 6 C -0.187 4.187 7 C -0.150 4.150 8 C 0.141 3.859 9 F -0.125 7.125 10 C -0.065 4.065 11 C 0.064 3.936 12 C -0.538 4.538 13 H 0.068 0.932 14 C -0.171 4.171 15 N -0.523 5.523 16 Si 0.774 3.226 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.199 1.199 20 C -0.238 4.238 21 C -0.211 4.211 22 H 0.073 0.927 23 H 0.086 0.914 24 H 0.129 0.871 25 H 0.169 0.831 26 H 0.177 0.823 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.035 4.930 -4.261 10.346 hybrid contribution 0.675 -0.613 1.026 1.373 sum -7.360 4.318 -3.235 9.126 Atomic orbital electron populations 1.23255 0.77706 1.04820 1.01720 1.86188 1.22222 1.26744 1.88605 1.18627 0.90997 0.85042 0.97164 1.21339 1.00779 0.91707 1.10840 1.20740 0.92330 0.97890 0.98395 1.20029 0.95053 0.94742 1.08833 1.20536 0.99598 0.92159 1.02678 1.17003 0.76303 0.93189 0.99432 1.91334 1.31129 1.97016 1.93063 1.18569 0.91391 0.93659 1.02921 1.17510 0.94899 0.92015 0.89205 1.20609 1.49355 0.91908 0.91889 0.93209 1.25600 0.94795 0.95749 1.01001 1.70112 1.46670 1.06548 1.28980 0.85775 0.78643 0.78506 0.79629 1.19984 1.20966 1.19950 1.22990 0.93153 1.01068 1.06540 1.22779 0.99847 0.97490 1.00983 0.92658 0.91388 0.87113 0.83060 0.82324 0.90424 0.89542 0.93581 0.93426 0.91165 0.90971 0.90065 0.90175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 9.82 113.37 1.11 1.66 16 2 O -0.32 -13.64 9.81 -92.39 -0.91 -14.55 16 3 C 0.13 5.63 6.64 22.50 0.15 5.78 16 4 C -0.23 -8.17 9.03 22.37 0.20 -7.96 16 5 C -0.08 -2.56 9.69 22.25 0.22 -2.34 16 6 C -0.19 -7.28 5.89 -19.81 -0.12 -7.39 16 7 C -0.09 -2.90 9.83 71.24 0.70 -2.20 16 8 C 0.16 7.67 5.41 22.36 0.12 7.80 16 9 F -0.15 -7.50 14.13 44.97 0.64 -6.87 16 10 C -0.06 -3.17 3.60 -19.73 -0.07 -3.24 16 11 C 0.06 3.37 1.33 -53.67 -0.07 3.30 16 12 C -0.50 -28.64 9.02 25.60 0.23 -28.41 16 13 H 0.05 2.85 7.82 -2.91 -0.02 2.83 16 14 C 0.03 1.70 5.39 84.66 0.46 2.15 16 15 N -0.89 -51.03 10.12 21.45 0.22 -50.81 16 16 Si 0.95 44.88 29.54 68.60 2.03 46.90 16 17 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 18 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 19 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 20 C -0.20 -9.74 8.90 30.59 0.27 -9.47 16 21 C -0.17 -8.00 9.81 30.59 0.30 -7.70 16 22 H 0.05 1.42 7.70 -2.39 -0.02 1.40 16 23 H 0.07 1.56 7.63 -2.39 -0.02 1.54 16 24 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 25 H 0.15 4.20 6.33 -2.91 -0.02 4.18 16 26 H 0.16 3.90 8.06 -2.91 -0.02 3.88 16 27 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.09 2.18 8.08 -2.39 -0.02 2.16 16 29 H 0.05 1.58 7.63 -2.39 -0.02 1.56 16 30 H 0.26 14.37 8.32 -92.71 -0.77 13.60 16 31 H 0.07 3.32 7.22 -2.38 -0.02 3.30 16 32 H 0.07 3.54 8.14 -2.39 -0.02 3.52 16 33 H 0.08 3.60 8.14 -2.39 -0.02 3.59 16 34 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 Total: -1.00 -66.89 288.77 6.57 -60.32 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 1.10 Total: 13.04 kcal Atomic # 6 Polarization: -51.53 SS G_CDS: 3.50 Total: -48.03 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 0.22 Total: -50.81 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.91 Total: -14.55 kcal Atomic # 9 Polarization: -7.50 SS G_CDS: 0.64 Total: -6.87 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -66.89 6.57 -60.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259987446.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.759 kcal (2) G-P(sol) polarization free energy of solvation -66.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds