Wall clock time and date at job start Mon Mar 30 2020 06:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99745 * 2 1 4 4 H 1.48499 * 109.47455 * 270.00279 * 3 2 1 5 5 H 1.48496 * 109.47327 * 30.00495 * 3 2 1 6 6 H 1.48501 * 109.47107 * 150.00251 * 3 2 1 7 7 C 1.37877 * 120.00232 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00145 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99792 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46872 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46912 * 180.02562 * 10 9 7 12 12 C 1.38168 * 120.01281 * 265.23167 * 11 10 9 13 13 C 1.38431 * 120.02944 * 180.25833 * 12 11 10 14 14 F 1.35104 * 119.97009 * 179.76532 * 13 12 11 15 15 C 1.38479 * 120.06307 * 359.73866 * 13 12 11 16 16 C 1.38131 * 120.02523 * 0.02690 * 15 13 12 17 17 C 1.38686 * 120.01541 * 84.99497 * 11 10 9 18 18 O 1.35941 * 120.03049 * 0.02562 * 17 11 10 19 19 C 1.42904 * 116.99769 * 186.50128 * 18 17 11 20 20 C 1.53005 * 117.49933 * 226.23946 * 19 18 17 21 21 C 1.53005 * 117.49701 * 157.57848 * 19 18 17 22 22 H 0.96994 * 119.99612 * 359.97438 * 1 2 3 23 23 H 1.09008 * 109.46693 * 60.00346 * 9 7 2 24 24 H 1.08997 * 109.47225 * 300.00782 * 9 7 2 25 25 H 1.08995 * 109.47297 * 60.00401 * 10 9 7 26 26 H 1.09006 * 109.46670 * 299.99950 * 10 9 7 27 27 H 1.08003 * 119.98965 * 359.97438 * 12 11 10 28 28 H 1.07995 * 119.98638 * 180.02562 * 15 13 12 29 29 H 1.07995 * 120.01342 * 179.97438 * 16 15 13 30 30 H 1.08997 * 115.55202 * 11.91080 * 19 18 17 31 31 H 1.09001 * 117.49512 * 0.02562 * 20 19 18 32 32 H 1.08999 * 117.49818 * 145.02224 * 20 19 18 33 33 H 1.08992 * 117.49701 * 214.98228 * 21 19 18 34 34 H 1.08997 * 117.49656 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4919 -4.9672 -0.0012 12 6 1.2321 -5.6158 1.1908 13 6 0.5446 -6.8173 1.1902 14 9 0.2954 -7.4529 2.3561 15 6 0.1117 -7.3683 -0.0042 16 6 0.3659 -6.7195 -1.1969 17 6 1.0547 -5.5153 -1.1978 18 8 1.3059 -4.8760 -2.3709 19 6 0.7057 -5.4205 -3.5479 20 6 1.5923 -5.5782 -4.7848 21 6 0.5216 -4.4849 -4.7445 22 1 -0.4849 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8904 24 1 0.6247 -2.5571 0.8896 25 1 2.8720 -3.6044 0.8894 26 1 2.8720 -3.6042 -0.8906 27 1 1.5694 -5.1875 2.1232 28 1 -0.4248 -8.3055 -0.0033 29 1 0.0285 -7.1495 -2.1284 30 1 -0.0604 -6.1770 -3.3780 31 1 2.6336 -5.2671 -4.7006 32 1 1.4092 -6.4383 -5.4289 33 1 -0.3654 -4.6262 -5.3620 34 1 0.8588 -3.4543 -4.6340 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259989411.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:04 Heat of formation + Delta-G solvation = -39.288276 kcal Electronic energy + Delta-G solvation = -17708.116829 eV Core-core repulsion = 14714.524185 eV Total energy + Delta-G solvation = -2993.592644 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.57282 -40.06190 -37.70290 -35.00800 -34.05252 -32.12714 -29.67165 -28.54926 -25.13508 -23.80518 -22.44742 -22.10106 -21.02203 -20.26926 -18.18733 -16.82972 -16.57672 -16.15235 -15.36581 -15.12360 -14.82645 -14.49140 -14.30848 -14.07541 -13.43346 -12.97612 -12.69220 -12.33826 -12.15613 -11.95818 -11.71397 -11.55055 -11.14462 -10.90240 -10.74311 -10.56776 -10.33715 -9.90743 -9.77087 -9.64021 -9.07350 -8.58115 -8.31272 -7.65182 -5.96423 -3.98892 1.42262 1.48873 3.21170 3.33871 3.39938 3.43363 3.68943 3.93152 4.47162 4.49928 4.68167 4.85615 4.90850 5.00510 5.02431 5.26405 5.39250 5.42990 5.57292 5.62486 5.87126 5.94048 6.07171 6.13014 6.22304 6.32693 6.40942 6.69031 6.81359 6.95484 7.13117 7.66451 7.72189 7.87394 8.04104 8.44355 9.07782 9.64490 11.14729 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.015822 B = 0.006870 C = 0.005104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.290905 B = 4074.465929 C = 5485.107213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.032 3.968 10 C -0.072 4.072 11 C -0.059 4.059 12 C -0.117 4.117 13 C 0.058 3.942 14 F -0.147 7.147 15 C -0.131 4.131 16 C -0.184 4.184 17 C 0.123 3.877 18 O -0.264 6.264 19 C 0.002 3.998 20 C -0.187 4.187 21 C -0.169 4.169 22 H 0.260 0.740 23 H 0.021 0.979 24 H 0.015 0.985 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.141 0.859 28 H 0.131 0.869 29 H 0.135 0.865 30 H 0.121 0.879 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.531 -14.321 -5.868 15.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.005 4.005 10 C -0.110 4.110 11 C -0.060 4.060 12 C -0.136 4.136 13 C 0.039 3.961 14 F -0.126 7.126 15 C -0.150 4.150 16 C -0.203 4.203 17 C 0.078 3.922 18 O -0.177 6.177 19 C -0.055 4.055 20 C -0.225 4.225 21 C -0.206 4.206 22 H 0.069 0.931 23 H 0.039 0.961 24 H 0.034 0.966 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.158 0.842 28 H 0.149 0.851 29 H 0.152 0.848 30 H 0.138 0.862 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.492 -14.046 -5.856 15.225 hybrid contribution 0.136 0.652 0.144 0.682 sum 0.627 -13.393 -5.712 14.574 Atomic orbital electron populations 1.69977 1.06033 1.26504 1.50872 1.25010 0.94826 0.99158 0.95391 0.86609 0.79861 0.83547 0.78075 1.20695 1.21255 1.19866 1.21237 0.93026 0.90929 1.50533 0.92624 1.19045 0.93631 0.90276 0.97513 1.20739 0.98379 0.90213 1.01631 1.19623 0.99645 0.97781 0.88945 1.20921 0.99914 0.93786 0.98969 1.17549 1.03507 0.93786 0.81293 1.91451 1.92916 1.81549 1.46677 1.20718 1.02398 1.01064 0.90840 1.20974 1.04466 0.96233 0.98588 1.18814 0.96278 0.91183 0.85931 1.86178 1.67616 1.51310 1.12563 1.22985 0.99908 1.01441 0.81171 1.23468 0.98041 1.01250 0.99693 1.23359 1.00788 0.97803 0.98632 0.93057 0.96102 0.96639 0.92050 0.91469 0.84153 0.85125 0.84786 0.86176 0.87838 0.88128 0.87766 0.87251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.03 0.86 4.96 -27.88 -0.14 0.72 16 10 C -0.07 -1.55 5.00 -27.88 -0.14 -1.69 16 11 C -0.06 -1.12 5.15 -104.48 -0.54 -1.66 16 12 C -0.12 -2.02 9.66 -39.54 -0.38 -2.40 16 13 C 0.06 0.92 7.30 -39.42 -0.29 0.63 16 14 F -0.15 -2.31 17.27 2.25 0.04 -2.27 16 15 C -0.13 -1.84 10.02 -39.53 -0.40 -2.24 16 16 C -0.18 -2.64 9.10 -39.44 -0.36 -3.00 16 17 C 0.12 2.16 6.65 -39.23 -0.26 1.90 16 18 O -0.26 -4.69 9.52 -19.55 -0.19 -4.88 16 19 C 0.00 0.02 6.07 -26.73 -0.16 -0.14 16 20 C -0.19 -2.04 10.48 -26.69 -0.28 -2.32 16 21 C -0.17 -2.04 10.48 -26.69 -0.28 -2.32 16 22 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 23 H 0.02 0.59 8.14 -51.92 -0.42 0.17 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 1.24 8.05 -51.93 -0.42 0.83 16 26 H 0.07 1.44 7.69 -51.93 -0.40 1.05 16 27 H 0.14 2.26 8.06 -52.48 -0.42 1.84 16 28 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.13 1.51 5.71 -52.49 -0.30 1.21 16 30 H 0.12 1.33 5.60 -51.93 -0.29 1.04 16 31 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.11 1.52 8.14 -51.93 -0.42 1.09 16 LS Contribution 298.43 15.07 4.50 4.50 Total: -1.00 -31.37 298.43 -7.90 -39.27 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -4.33 Total: -0.81 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: -3.63 Total: -26.13 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.74 Total: -26.48 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.19 Total: -4.88 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.37 -7.90 -39.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259989411.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.023 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds