Wall clock time and date at job start Mon Mar 30 2020 06:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99745 * 2 1 4 4 H 1.48499 * 109.47455 * 270.00279 * 3 2 1 5 5 H 1.48496 * 109.47327 * 30.00495 * 3 2 1 6 6 H 1.48501 * 109.47107 * 150.00251 * 3 2 1 7 7 C 1.37877 * 120.00232 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00145 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99792 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46872 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46912 * 180.02562 * 10 9 7 12 12 C 1.38168 * 120.01281 * 265.23167 * 11 10 9 13 13 C 1.38431 * 120.02944 * 180.25833 * 12 11 10 14 14 F 1.35104 * 119.97009 * 179.76532 * 13 12 11 15 15 C 1.38479 * 120.06307 * 359.73866 * 13 12 11 16 16 C 1.38131 * 120.02523 * 0.02690 * 15 13 12 17 17 C 1.38686 * 120.01541 * 84.99497 * 11 10 9 18 18 O 1.35941 * 120.03049 * 0.02562 * 17 11 10 19 19 C 1.42904 * 116.99769 * 186.50128 * 18 17 11 20 20 C 1.53005 * 117.49933 * 226.23946 * 19 18 17 21 21 C 1.53005 * 117.49701 * 157.57848 * 19 18 17 22 22 H 0.96994 * 119.99612 * 359.97438 * 1 2 3 23 23 H 1.09008 * 109.46693 * 60.00346 * 9 7 2 24 24 H 1.08997 * 109.47225 * 300.00782 * 9 7 2 25 25 H 1.08995 * 109.47297 * 60.00401 * 10 9 7 26 26 H 1.09006 * 109.46670 * 299.99950 * 10 9 7 27 27 H 1.08003 * 119.98965 * 359.97438 * 12 11 10 28 28 H 1.07995 * 119.98638 * 180.02562 * 15 13 12 29 29 H 1.07995 * 120.01342 * 179.97438 * 16 15 13 30 30 H 1.08997 * 115.55202 * 11.91080 * 19 18 17 31 31 H 1.09001 * 117.49512 * 0.02562 * 20 19 18 32 32 H 1.08999 * 117.49818 * 145.02224 * 20 19 18 33 33 H 1.08992 * 117.49701 * 214.98228 * 21 19 18 34 34 H 1.08997 * 117.49656 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4919 -4.9672 -0.0012 12 6 1.2321 -5.6158 1.1908 13 6 0.5446 -6.8173 1.1902 14 9 0.2954 -7.4529 2.3561 15 6 0.1117 -7.3683 -0.0042 16 6 0.3659 -6.7195 -1.1969 17 6 1.0547 -5.5153 -1.1978 18 8 1.3059 -4.8760 -2.3709 19 6 0.7057 -5.4205 -3.5479 20 6 1.5923 -5.5782 -4.7848 21 6 0.5216 -4.4849 -4.7445 22 1 -0.4849 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8904 24 1 0.6247 -2.5571 0.8896 25 1 2.8720 -3.6044 0.8894 26 1 2.8720 -3.6042 -0.8906 27 1 1.5694 -5.1875 2.1232 28 1 -0.4248 -8.3055 -0.0033 29 1 0.0285 -7.1495 -2.1284 30 1 -0.0604 -6.1770 -3.3780 31 1 2.6336 -5.2671 -4.7006 32 1 1.4092 -6.4383 -5.4289 33 1 -0.3654 -4.6262 -5.3620 34 1 0.8588 -3.4543 -4.6340 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259989411.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:04 Heat of formation + Delta-G solvation = -56.362459 kcal Electronic energy + Delta-G solvation = -17708.857221 eV Core-core repulsion = 14714.524185 eV Total energy + Delta-G solvation = -2994.333036 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.80634 -41.29164 -38.87291 -36.09768 -35.93980 -34.00355 -31.17814 -30.06085 -27.02188 -24.98689 -23.82700 -23.33791 -22.22159 -21.84190 -19.36590 -18.60162 -17.89973 -17.80610 -16.66211 -16.47695 -16.16180 -15.97019 -15.55402 -15.20902 -14.97400 -14.61356 -14.16924 -14.00784 -13.68195 -13.35095 -13.15568 -12.85476 -12.76051 -12.46693 -12.44208 -11.96709 -11.76312 -11.60097 -11.39019 -11.15752 -10.89832 -10.56098 -9.93503 -8.93560 -8.19918 -6.31980 0.17615 0.22070 1.38813 1.40727 1.51929 2.10913 2.39863 2.54189 2.87877 3.12559 3.28994 3.60954 3.70791 3.89615 3.97134 4.03097 4.15410 4.20606 4.43051 4.61686 4.73627 4.75360 4.82072 4.86555 4.98569 5.10630 5.14000 5.19089 5.21228 5.31910 5.48238 5.74446 5.77784 5.84428 6.22050 6.49921 6.83994 7.36887 8.91766 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.015822 B = 0.006870 C = 0.005104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.290905 B = 4074.465929 C = 5485.107213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.044 3.956 10 C -0.056 4.056 11 C -0.096 4.096 12 C -0.124 4.124 13 C 0.048 3.952 14 F -0.146 7.146 15 C -0.112 4.112 16 C -0.173 4.173 17 C 0.112 3.888 18 O -0.299 6.299 19 C -0.025 4.025 20 C -0.165 4.165 21 C -0.179 4.179 22 H 0.263 0.737 23 H -0.012 1.012 24 H -0.013 1.013 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.140 0.860 28 H 0.170 0.830 29 H 0.173 0.827 30 H 0.148 0.852 31 H 0.091 0.909 32 H 0.138 0.862 33 H 0.132 0.868 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.514 -15.881 -6.907 17.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.079 0.921 9 C 0.007 3.993 10 C -0.093 4.093 11 C -0.097 4.097 12 C -0.143 4.143 13 C 0.028 3.972 14 F -0.125 7.125 15 C -0.131 4.131 16 C -0.192 4.192 17 C 0.067 3.933 18 O -0.212 6.212 19 C -0.081 4.081 20 C -0.202 4.202 21 C -0.216 4.216 22 H 0.072 0.928 23 H 0.006 0.994 24 H 0.006 0.994 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.158 0.842 28 H 0.188 0.812 29 H 0.190 0.810 30 H 0.165 0.835 31 H 0.110 0.890 32 H 0.156 0.844 33 H 0.150 0.850 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.487 -15.618 -6.898 17.081 hybrid contribution 0.091 1.078 0.425 1.162 sum 0.579 -14.540 -6.473 15.927 Atomic orbital electron populations 1.70117 1.07855 1.27742 1.51580 1.25991 0.95770 1.03356 0.94618 0.85436 0.78711 0.78300 0.78546 1.19728 1.20574 1.18620 1.21679 0.93547 0.92223 1.50702 0.92106 1.18820 0.93838 0.92195 0.94446 1.20374 0.97286 0.90254 1.01388 1.19425 1.02048 0.97495 0.90685 1.20953 1.00294 0.94611 0.98453 1.17646 1.03835 0.93517 0.82166 1.91453 1.92901 1.81345 1.46793 1.21165 1.00550 1.01783 0.89592 1.21339 1.02803 0.94655 1.00361 1.19022 0.96554 0.92285 0.85447 1.86124 1.68521 1.52783 1.13804 1.23486 1.01700 1.02666 0.80260 1.23554 0.96890 1.01573 0.98144 1.23442 1.02660 0.96585 0.98867 0.92777 0.99354 0.99420 0.91556 0.92247 0.84206 0.81208 0.81029 0.83490 0.89008 0.84442 0.84990 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.43 13.29 21.45 0.28 -58.14 16 2 C 0.00 0.02 5.46 84.65 0.46 0.48 16 3 Si 0.97 45.30 29.54 68.60 2.03 47.33 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.54 -32.20 9.11 25.60 0.23 -31.97 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.04 2.47 4.96 29.85 0.15 2.62 16 10 C -0.06 -2.51 5.00 29.85 0.15 -2.36 16 11 C -0.10 -3.73 5.15 -19.77 -0.10 -3.84 16 12 C -0.12 -4.35 9.66 22.30 0.22 -4.13 16 13 C 0.05 1.45 7.30 22.37 0.16 1.61 16 14 F -0.15 -4.36 17.27 44.97 0.78 -3.58 16 15 C -0.11 -2.79 10.02 22.30 0.22 -2.57 16 16 C -0.17 -4.49 9.10 22.36 0.20 -4.29 16 17 C 0.11 3.91 6.65 22.49 0.15 4.06 16 18 O -0.30 -10.79 9.52 -92.88 -0.88 -11.68 16 19 C -0.03 -0.64 6.07 30.60 0.19 -0.46 16 20 C -0.16 -3.25 10.48 30.62 0.32 -2.92 16 21 C -0.18 -4.17 10.48 30.62 0.32 -3.85 16 22 H 0.26 15.43 8.31 -92.71 -0.77 14.65 16 23 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 24 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 25 H 0.07 2.82 8.05 -2.39 -0.02 2.81 16 26 H 0.06 2.70 7.69 -2.38 -0.02 2.68 16 27 H 0.14 4.69 8.06 -2.91 -0.02 4.67 16 28 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 29 H 0.17 3.07 5.71 -2.91 -0.02 3.05 16 30 H 0.15 2.75 5.60 -2.39 -0.01 2.74 16 31 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -70.72 298.43 5.97 -64.75 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 1.10 Total: 8.95 kcal Atomic # 6 Polarization: -50.30 SS G_CDS: 2.67 Total: -47.62 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 0.28 Total: -58.14 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -0.88 Total: -11.68 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.78 Total: -3.58 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -70.72 5.97 -64.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259989411.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.384 kcal (2) G-P(sol) polarization free energy of solvation -70.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds