Wall clock time and date at job start Mon Mar 30 2020 06:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86796 * 119.99900 * 2 1 4 4 H 1.48510 * 109.46915 * 270.00066 * 3 2 1 5 5 H 1.48499 * 109.47436 * 29.99834 * 3 2 1 6 6 H 1.48502 * 109.47118 * 150.00522 * 3 2 1 7 7 C 1.39939 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99999 * 170.72987 * 7 2 1 9 9 C 1.41401 * 120.00300 * 350.99434 * 7 2 1 10 10 C 1.40739 * 120.24075 * 331.27035 * 9 7 2 11 11 C 1.37602 * 119.74047 * 179.97438 * 10 9 7 12 12 C 1.38653 * 120.24727 * 359.97195 * 11 10 9 13 13 C 1.38606 * 120.50571 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.87869 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.46753 * 6.65766 * 14 13 12 16 16 F 1.39896 * 109.47388 * 126.65773 * 14 13 12 17 17 C 1.52999 * 109.47311 * 246.66380 * 14 13 12 18 18 H 1.09001 * 110.43434 * 52.06785 * 17 14 13 19 19 C 1.54809 * 110.48680 * 289.37650 * 17 14 13 20 20 C 1.54990 * 102.09537 * 220.44099 * 19 17 14 21 21 O 1.44387 * 103.48997 * 37.02455 * 20 19 17 22 22 C 1.43741 * 106.97222 * 319.94215 * 21 20 19 23 23 C 1.37637 * 120.24948 * 359.71862 * 13 12 11 24 24 H 0.97004 * 119.99946 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.13010 * 0.02562 * 10 9 7 26 26 H 1.08004 * 119.86893 * 179.97438 * 11 10 9 27 27 H 1.08006 * 119.74500 * 180.02562 * 12 11 10 28 28 H 1.08998 * 110.91099 * 338.64582 * 19 17 14 29 29 H 1.09008 * 110.90681 * 102.24638 * 19 17 14 30 30 H 1.08994 * 110.62391 * 278.52791 * 20 19 17 31 31 H 1.08999 * 110.61898 * 155.52584 * 20 19 17 32 32 H 1.09004 * 109.87664 * 267.08549 * 22 21 20 33 33 H 1.09000 * 109.87811 * 145.93553 * 22 21 20 34 34 H 1.07994 * 120.13231 * 180.30028 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4002 5 1 1.4397 2.6527 0.7000 6 1 3.5399 1.4401 0.6999 7 6 2.0079 -1.2119 -0.0005 8 1 3.0773 -1.2180 -0.1512 9 6 1.3140 -2.4291 0.1906 10 6 0.1277 -2.4574 0.9474 11 6 -0.5395 -3.6474 1.1264 12 6 -0.0476 -4.8154 0.5640 13 6 1.1197 -4.7993 -0.1832 14 6 1.6414 -6.0770 -0.7884 15 1 0.9152 -6.8751 -0.6339 16 9 1.8476 -5.8932 -2.1598 17 6 2.9646 -6.4551 -0.1198 18 1 2.8537 -6.4654 0.9645 19 6 4.0853 -5.4748 -0.5436 20 6 5.2927 -6.4268 -0.7389 21 8 4.6979 -7.6126 -1.3088 22 6 3.4517 -7.8269 -0.6253 23 6 1.8009 -3.6195 -0.3797 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2578 -1.5485 1.3852 26 1 -1.4498 -3.6716 1.7071 27 1 -0.5781 -5.7449 0.7094 28 1 3.8307 -4.9729 -1.4770 29 1 4.2858 -4.7490 0.2446 30 1 5.7608 -6.6545 0.2187 31 1 6.0170 -5.9918 -1.4275 32 1 3.6027 -8.5005 0.2183 33 1 2.7196 -8.2497 -1.3133 34 1 2.7076 -3.6083 -0.9663 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260023460.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:02 Heat of formation + Delta-G solvation = -87.587038 kcal Electronic energy + Delta-G solvation = -18264.335346 eV Core-core repulsion = 15268.648311 eV Total energy + Delta-G solvation = -2995.687035 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -47.15069 -39.13011 -37.57948 -34.05741 -32.82874 -30.20037 -29.69949 -29.08822 -25.51595 -24.83344 -22.61867 -20.80612 -20.61841 -19.78591 -17.33635 -16.30220 -16.18827 -15.60344 -15.30736 -14.96221 -14.75012 -14.40366 -14.00839 -13.22476 -13.06658 -12.69432 -12.46014 -12.06562 -11.81248 -11.53697 -11.31467 -11.21344 -11.14135 -10.80320 -10.68253 -10.56825 -10.49484 -10.29425 -9.66962 -9.47787 -9.33567 -9.24504 -7.54247 -7.39577 -6.72853 -4.43180 2.71131 2.82694 3.05450 3.09288 3.15559 3.91762 4.05972 4.53043 4.63671 4.82980 5.00892 5.26631 5.32020 5.36779 5.50830 5.53493 5.69121 5.80332 5.85761 5.89916 6.17642 6.24473 6.30393 6.35617 6.44827 6.88360 6.97401 7.00536 7.15961 7.28298 7.49818 7.76671 7.97322 7.98438 8.19979 8.57939 8.85101 8.89697 10.20785 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.026994 B = 0.006389 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.000742 B = 4381.397837 C = 5086.165571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.463 4.463 8 H 0.076 0.924 9 C 0.104 3.896 10 C -0.150 4.150 11 C -0.111 4.111 12 C -0.220 4.220 13 C -0.109 4.109 14 C 0.151 3.849 15 H 0.078 0.922 16 F -0.209 7.209 17 C -0.142 4.142 18 H 0.098 0.902 19 C -0.147 4.147 20 C 0.046 3.954 21 O -0.380 6.380 22 C 0.052 3.948 23 C -0.194 4.194 24 H 0.279 0.721 25 H 0.123 0.877 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.676 -7.845 1.472 9.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.493 4.493 8 H 0.094 0.906 9 C 0.102 3.898 10 C -0.169 4.169 11 C -0.130 4.130 12 C -0.239 4.239 13 C -0.109 4.109 14 C 0.115 3.885 15 H 0.096 0.904 16 F -0.190 7.190 17 C -0.161 4.161 18 H 0.117 0.883 19 C -0.184 4.184 20 C -0.031 4.031 21 O -0.299 6.299 22 C -0.025 4.025 23 C -0.214 4.214 24 H 0.090 0.910 25 H 0.141 0.859 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.570 -7.802 1.260 9.129 hybrid contribution 0.059 0.969 0.107 0.976 sum 4.629 -6.833 1.367 8.366 Atomic orbital electron populations 1.69776 1.07420 1.28992 1.36904 1.25880 0.94850 1.01232 0.92398 0.86265 0.80368 0.80581 0.79209 1.19500 1.20163 1.18578 1.19540 0.95514 0.90322 1.43918 0.90565 1.17633 0.91771 0.91981 0.88405 1.21519 0.98067 0.96563 1.00747 1.20683 0.98607 0.93425 1.00241 1.20191 0.98665 0.97053 1.08010 1.19477 0.97003 0.93348 1.01112 1.20233 0.95411 0.97058 0.75785 0.90411 1.92790 1.96141 1.96801 1.33250 1.23141 0.95873 0.95147 1.01915 0.88320 1.23260 0.93333 0.97987 1.03819 1.23598 0.96147 0.85075 0.98261 1.88829 1.34353 1.45900 1.60802 1.23219 0.86583 0.96109 0.96572 1.20984 1.02379 0.92625 1.05376 0.90963 0.85897 0.89163 0.89367 0.89136 0.89489 0.92488 0.89115 0.92384 0.89896 0.88135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.75 10.75 55.55 0.60 -20.15 16 2 C 0.07 1.81 5.29 -17.34 -0.09 1.72 16 3 Si 0.91 18.61 29.57 -169.99 -5.03 13.58 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 7 C -0.46 -12.08 9.07 -37.74 -0.34 -12.42 16 8 H 0.08 1.90 7.86 -52.49 -0.41 1.49 16 9 C 0.10 2.72 5.56 -106.82 -0.59 2.13 16 10 C -0.15 -3.81 8.66 -38.87 -0.34 -4.15 16 11 C -0.11 -2.54 10.02 -39.66 -0.40 -2.94 16 12 C -0.22 -4.71 9.67 -39.29 -0.38 -5.09 16 13 C -0.11 -2.33 5.03 -104.70 -0.53 -2.86 16 14 C 0.15 2.68 3.06 -27.88 -0.09 2.59 16 15 H 0.08 1.21 7.88 -51.93 -0.41 0.80 16 16 F -0.21 -4.13 15.64 2.25 0.04 -4.10 16 17 C -0.14 -2.15 2.90 -89.09 -0.26 -2.41 16 18 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 19 C -0.15 -2.26 4.73 -24.73 -0.12 -2.37 16 20 C 0.05 0.61 7.72 38.21 0.29 0.90 16 21 O -0.38 -5.84 11.52 -35.23 -0.41 -6.25 16 22 C 0.05 0.71 7.26 37.73 0.27 0.98 16 23 C -0.19 -4.59 8.33 -38.87 -0.32 -4.92 16 24 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 25 H 0.12 3.25 6.15 -52.49 -0.32 2.93 16 26 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 27 H 0.09 1.64 7.95 -52.48 -0.42 1.23 16 28 H 0.09 1.57 5.73 -51.93 -0.30 1.28 16 29 H 0.09 1.34 8.05 -51.92 -0.42 0.92 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.10 7.69 -51.93 -0.40 0.70 16 34 H 0.10 2.28 5.58 -52.49 -0.29 1.99 16 LS Contribution 281.91 15.07 4.25 4.25 Total: -1.00 -27.77 281.91 -7.65 -35.42 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -4.22 Total: 6.07 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: -2.89 Total: -28.83 kcal Atomic # 7 Polarization: -20.75 SS G_CDS: 0.60 Total: -20.15 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.41 Total: -6.25 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.04 Total: -4.10 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.77 -7.65 -35.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260023460.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.162 kcal (2) G-P(sol) polarization free energy of solvation -27.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds