Wall clock time and date at job start Mon Mar 30 2020 06:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86796 * 119.99900 * 2 1 4 4 H 1.48510 * 109.46915 * 270.00066 * 3 2 1 5 5 H 1.48499 * 109.47436 * 29.99834 * 3 2 1 6 6 H 1.48502 * 109.47118 * 150.00522 * 3 2 1 7 7 C 1.39939 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99999 * 170.72987 * 7 2 1 9 9 C 1.41401 * 120.00300 * 350.99434 * 7 2 1 10 10 C 1.40739 * 120.24075 * 331.27035 * 9 7 2 11 11 C 1.37602 * 119.74047 * 179.97438 * 10 9 7 12 12 C 1.38653 * 120.24727 * 359.97195 * 11 10 9 13 13 C 1.38606 * 120.50571 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.87869 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.46753 * 6.65766 * 14 13 12 16 16 F 1.39896 * 109.47388 * 126.65773 * 14 13 12 17 17 C 1.52999 * 109.47311 * 246.66380 * 14 13 12 18 18 H 1.09001 * 110.43434 * 52.06785 * 17 14 13 19 19 C 1.54809 * 110.48680 * 289.37650 * 17 14 13 20 20 C 1.54990 * 102.09537 * 220.44099 * 19 17 14 21 21 O 1.44387 * 103.48997 * 37.02455 * 20 19 17 22 22 C 1.43741 * 106.97222 * 319.94215 * 21 20 19 23 23 C 1.37637 * 120.24948 * 359.71862 * 13 12 11 24 24 H 0.97004 * 119.99946 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.13010 * 0.02562 * 10 9 7 26 26 H 1.08004 * 119.86893 * 179.97438 * 11 10 9 27 27 H 1.08006 * 119.74500 * 180.02562 * 12 11 10 28 28 H 1.08998 * 110.91099 * 338.64582 * 19 17 14 29 29 H 1.09008 * 110.90681 * 102.24638 * 19 17 14 30 30 H 1.08994 * 110.62391 * 278.52791 * 20 19 17 31 31 H 1.08999 * 110.61898 * 155.52584 * 20 19 17 32 32 H 1.09004 * 109.87664 * 267.08549 * 22 21 20 33 33 H 1.09000 * 109.87811 * 145.93553 * 22 21 20 34 34 H 1.07994 * 120.13231 * 180.30028 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4002 5 1 1.4397 2.6527 0.7000 6 1 3.5399 1.4401 0.6999 7 6 2.0079 -1.2119 -0.0005 8 1 3.0773 -1.2180 -0.1512 9 6 1.3140 -2.4291 0.1906 10 6 0.1277 -2.4574 0.9474 11 6 -0.5395 -3.6474 1.1264 12 6 -0.0476 -4.8154 0.5640 13 6 1.1197 -4.7993 -0.1832 14 6 1.6414 -6.0770 -0.7884 15 1 0.9152 -6.8751 -0.6339 16 9 1.8476 -5.8932 -2.1598 17 6 2.9646 -6.4551 -0.1198 18 1 2.8537 -6.4654 0.9645 19 6 4.0853 -5.4748 -0.5436 20 6 5.2927 -6.4268 -0.7389 21 8 4.6979 -7.6126 -1.3088 22 6 3.4517 -7.8269 -0.6253 23 6 1.8009 -3.6195 -0.3797 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2578 -1.5485 1.3852 26 1 -1.4498 -3.6716 1.7071 27 1 -0.5781 -5.7449 0.7094 28 1 3.8307 -4.9729 -1.4770 29 1 4.2858 -4.7490 0.2446 30 1 5.7608 -6.6545 0.2187 31 1 6.0170 -5.9918 -1.4275 32 1 3.6027 -8.5005 0.2183 33 1 2.7196 -8.2497 -1.3133 34 1 2.7076 -3.6083 -0.9663 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260023460.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:01 Heat of formation + Delta-G solvation = -102.130994 kcal Electronic energy + Delta-G solvation = -18264.966020 eV Core-core repulsion = 15268.648311 eV Total energy + Delta-G solvation = -2996.317708 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.64656 -40.32065 -39.31115 -35.80835 -34.28278 -31.90345 -31.31694 -30.36234 -27.33115 -26.34563 -23.81786 -22.47089 -22.24691 -21.22310 -19.08888 -17.62225 -17.41799 -17.33769 -16.72795 -16.44372 -16.14875 -16.00102 -15.33327 -14.91440 -14.82291 -14.18644 -13.77207 -13.57672 -13.35373 -13.04984 -13.01901 -12.73307 -12.58766 -12.32432 -12.28450 -12.16304 -11.80485 -11.68061 -11.33865 -11.10319 -11.01965 -10.60076 -9.38090 -9.23951 -8.58381 -6.38902 0.93686 0.99825 1.36978 1.48065 1.51287 2.20454 2.72875 2.98400 3.34779 3.56348 3.68771 3.80102 4.04315 4.16386 4.17846 4.28909 4.33881 4.53063 4.67957 4.74815 4.78102 4.85024 4.92042 5.02408 5.06091 5.11865 5.20979 5.28459 5.45636 5.66636 5.90514 5.96648 6.08435 6.13011 6.33899 6.68400 6.93837 7.00653 8.37263 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.026994 B = 0.006389 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.000742 B = 4381.397837 C = 5086.165571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.030 3.970 3 Si 0.983 3.017 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.500 4.500 8 H 0.073 0.927 9 C 0.072 3.928 10 C -0.177 4.177 11 C -0.115 4.115 12 C -0.213 4.213 13 C -0.108 4.108 14 C 0.149 3.851 15 H 0.110 0.890 16 F -0.223 7.223 17 C -0.138 4.138 18 H 0.111 0.889 19 C -0.150 4.150 20 C 0.050 3.950 21 O -0.400 6.400 22 C 0.054 3.946 23 C -0.205 4.205 24 H 0.285 0.715 25 H 0.104 0.896 26 H 0.115 0.885 27 H 0.127 0.873 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.058 -9.372 1.924 10.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.182 4.182 3 Si 0.804 3.196 4 H -0.190 1.190 5 H -0.191 1.191 6 H -0.181 1.181 7 C -0.531 4.531 8 H 0.091 0.909 9 C 0.070 3.930 10 C -0.197 4.197 11 C -0.134 4.134 12 C -0.233 4.233 13 C -0.109 4.109 14 C 0.113 3.887 15 H 0.127 0.873 16 F -0.204 7.204 17 C -0.157 4.157 18 H 0.129 0.871 19 C -0.188 4.188 20 C -0.026 4.026 21 O -0.319 6.319 22 C -0.022 4.022 23 C -0.224 4.224 24 H 0.096 0.904 25 H 0.122 0.878 26 H 0.133 0.867 27 H 0.145 0.855 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.118 0.882 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.950 -9.349 1.714 10.716 hybrid contribution -0.115 1.319 -0.034 1.325 sum 4.835 -8.030 1.679 9.522 Atomic orbital electron populations 1.69848 1.08802 1.30151 1.37746 1.26723 0.95638 1.04411 0.91467 0.85192 0.79047 0.76063 0.79331 1.19040 1.19091 1.18133 1.19798 0.95652 0.91592 1.46016 0.90855 1.17995 0.92623 0.93060 0.89367 1.21482 0.98926 0.97130 1.02155 1.21002 0.99163 0.93032 1.00168 1.20650 0.98302 0.97980 1.06319 1.19898 0.96507 0.94268 1.00207 1.20460 0.97615 0.95778 0.74861 0.87253 1.92766 1.96334 1.96838 1.34420 1.23133 0.94215 0.96043 1.02333 0.87105 1.23199 0.94970 0.98413 1.02233 1.23673 0.95302 0.83953 0.99639 1.88808 1.35059 1.46352 1.61690 1.23311 0.86085 0.95287 0.97540 1.21108 1.02746 0.93078 1.05514 0.90405 0.87797 0.86746 0.85526 0.91791 0.90147 0.90217 0.88176 0.89524 0.89496 0.88230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.63 10.75 21.83 0.23 -44.40 16 2 C 0.03 1.55 5.29 85.25 0.45 2.00 16 3 Si 0.98 38.85 29.57 68.60 2.03 40.88 16 4 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 5 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 6 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 7 C -0.50 -27.20 9.07 23.46 0.21 -26.99 16 8 H 0.07 3.84 7.86 -2.91 -0.02 3.82 16 9 C 0.07 3.86 5.56 -21.29 -0.12 3.74 16 10 C -0.18 -9.29 8.66 22.73 0.20 -9.09 16 11 C -0.12 -5.18 10.02 22.22 0.22 -4.96 16 12 C -0.21 -8.65 9.67 22.46 0.22 -8.43 16 13 C -0.11 -4.49 5.03 -19.92 -0.10 -4.59 16 14 C 0.15 4.91 3.06 29.85 0.09 5.00 16 15 H 0.11 2.95 7.88 -2.39 -0.02 2.93 16 16 F -0.22 -8.54 15.64 44.97 0.70 -7.83 16 17 C -0.14 -3.86 2.90 -9.80 -0.03 -3.88 16 18 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 19 C -0.15 -4.51 4.73 31.89 0.15 -4.36 16 20 C 0.05 1.24 7.72 72.66 0.56 1.80 16 21 O -0.40 -11.30 11.52 -148.98 -1.72 -13.02 16 22 C 0.05 1.30 7.26 72.35 0.53 1.83 16 23 C -0.21 -9.87 8.33 22.73 0.19 -9.68 16 24 H 0.29 13.79 8.30 -92.71 -0.77 13.02 16 25 H 0.10 5.75 6.15 -2.91 -0.02 5.73 16 26 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 27 H 0.13 4.15 7.95 -2.91 -0.02 4.13 16 28 H 0.06 2.25 5.73 -2.39 -0.01 2.24 16 29 H 0.08 2.47 8.05 -2.38 -0.02 2.45 16 30 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.09 2.02 7.69 -2.39 -0.02 2.00 16 34 H 0.10 4.69 5.58 -2.91 -0.02 4.68 16 Total: -1.00 -61.21 281.91 4.92 -56.28 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 1.10 Total: 25.70 kcal Atomic # 6 Polarization: -60.19 SS G_CDS: 2.57 Total: -57.62 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.23 Total: -44.40 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -1.72 Total: -13.02 kcal Atomic # 9 Polarization: -8.54 SS G_CDS: 0.70 Total: -7.83 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Total: -61.21 4.92 -56.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260023460.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.846 kcal (2) G-P(sol) polarization free energy of solvation -61.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds