Wall clock time and date at job start Mon Mar 30 2020 06:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86798 * 119.99529 * 2 1 4 4 H 1.48497 * 109.47171 * 269.99798 * 3 2 1 5 5 H 1.48501 * 109.47168 * 29.99737 * 3 2 1 6 6 H 1.48496 * 109.47106 * 150.00113 * 3 2 1 7 7 C 1.39939 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99971 * 197.86012 * 7 2 1 9 9 C 1.41395 * 120.00390 * 17.86472 * 7 2 1 10 10 C 1.40737 * 120.24188 * 24.35634 * 9 7 2 11 11 C 1.37599 * 119.74197 * 180.02562 * 10 9 7 12 12 C 1.38654 * 120.25018 * 359.73203 * 11 10 9 13 13 C 1.38612 * 120.50073 * 0.54555 * 12 11 10 14 14 C 1.50699 * 119.87731 * 179.72160 * 13 12 11 15 15 H 1.09004 * 109.47352 * 174.73171 * 14 13 12 16 16 F 1.39904 * 109.46888 * 54.73114 * 14 13 12 17 17 C 1.53003 * 109.47071 * 294.73320 * 14 13 12 18 18 H 1.08991 * 110.83243 * 308.64311 * 17 14 13 19 19 C 1.54817 * 110.90406 * 184.99614 * 17 14 13 20 20 C 1.54104 * 104.18700 * 220.92015 * 19 17 14 21 21 O 1.43741 * 107.29178 * 357.97232 * 20 19 17 22 22 C 1.44380 * 106.97693 * 26.51419 * 21 20 19 23 23 C 1.37645 * 120.24802 * 359.45787 * 13 12 11 24 24 H 0.96993 * 120.00516 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.12623 * 0.05104 * 10 9 7 26 26 H 1.07999 * 119.87249 * 180.02562 * 11 10 9 27 27 H 1.08004 * 119.74941 * 180.29780 * 12 11 10 28 28 H 1.08995 * 110.49247 * 339.59751 * 19 17 14 29 29 H 1.09006 * 110.48181 * 102.24716 * 19 17 14 30 30 H 1.08993 * 109.87737 * 117.39451 * 20 19 17 31 31 H 1.08997 * 109.87911 * 238.55103 * 20 19 17 32 32 H 1.09007 * 110.61809 * 201.43541 * 22 21 20 33 33 H 1.08998 * 110.61697 * 78.44050 * 22 21 20 34 34 H 1.07997 * 120.12700 * 180.25065 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4395 2.6527 0.7000 6 1 3.5397 1.4403 0.7000 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2343 0.2874 9 6 1.3523 -2.4071 -0.3746 10 6 0.2206 -2.3626 -1.2100 11 6 -0.4099 -3.5320 -1.5682 12 6 0.0690 -4.7513 -1.1138 13 6 1.1793 -4.8067 -0.2859 14 6 1.6841 -6.1391 0.2049 15 1 2.6103 -5.9943 0.7610 16 9 1.9229 -6.9787 -0.8885 17 6 0.6352 -6.7769 1.1181 18 1 0.3201 -6.0786 1.8933 19 6 1.1699 -8.0895 1.7411 20 6 -0.0314 -9.0528 1.6812 21 8 -1.1377 -8.3222 1.1257 22 6 -0.5806 -7.2785 0.2980 23 6 1.8258 -3.6496 0.0853 24 1 -0.4850 0.8399 -0.0004 25 1 -0.1512 -1.4143 -1.5690 26 1 -1.2783 -3.5003 -2.2096 27 1 -0.4293 -5.6645 -1.4039 28 1 2.0013 -8.4795 1.1540 29 1 1.4755 -7.9244 2.7743 30 1 0.2077 -9.9042 1.0441 31 1 -0.2810 -9.3968 2.6848 32 1 -1.3039 -6.4758 0.1538 33 1 -0.2566 -7.6815 -0.6615 34 1 2.6932 -3.6953 0.7271 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260023463.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:03 Heat of formation + Delta-G solvation = -89.634670 kcal Electronic energy + Delta-G solvation = -18093.632851 eV Core-core repulsion = 15097.857024 eV Total energy + Delta-G solvation = -2995.775827 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -47.25497 -39.13959 -37.58189 -34.09912 -32.83648 -30.45884 -29.97974 -28.60918 -25.39934 -25.19208 -22.47531 -20.83174 -20.68249 -19.86741 -17.35744 -16.46965 -16.13302 -15.62700 -15.47160 -14.86093 -14.76041 -14.22974 -13.86764 -13.35980 -13.17210 -13.10183 -12.42389 -12.30604 -11.72098 -11.55453 -11.41941 -11.30715 -11.11151 -10.86932 -10.66152 -10.58936 -10.49448 -10.33227 -9.59502 -9.51398 -9.44739 -9.21241 -7.58250 -7.44836 -6.82639 -4.43252 2.69602 2.80825 3.03966 3.07188 3.15870 3.88459 4.03718 4.52677 4.55959 4.86754 4.90682 5.15486 5.26888 5.35610 5.50363 5.51955 5.64277 5.77321 5.79593 5.96225 6.04556 6.12930 6.26987 6.37051 6.46869 6.81731 6.96319 6.98291 7.14374 7.26518 7.45701 7.75293 7.95094 7.98211 8.17163 8.54818 8.81166 8.87616 10.12585 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.040508 B = 0.005145 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.053916 B = 5441.035349 C = 5574.811174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.464 4.464 8 H 0.078 0.922 9 C 0.108 3.892 10 C -0.155 4.155 11 C -0.107 4.107 12 C -0.222 4.222 13 C -0.104 4.104 14 C 0.152 3.848 15 H 0.083 0.917 16 F -0.214 7.214 17 C -0.139 4.139 18 H 0.103 0.897 19 C -0.155 4.155 20 C 0.049 3.951 21 O -0.383 6.383 22 C 0.053 3.947 23 C -0.206 4.206 24 H 0.281 0.719 25 H 0.119 0.881 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.232 -8.981 2.237 9.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.493 4.493 8 H 0.096 0.904 9 C 0.106 3.894 10 C -0.175 4.175 11 C -0.125 4.125 12 C -0.241 4.241 13 C -0.105 4.105 14 C 0.116 3.884 15 H 0.101 0.899 16 F -0.194 7.194 17 C -0.158 4.158 18 H 0.121 0.879 19 C -0.193 4.193 20 C -0.028 4.028 21 O -0.302 6.302 22 C -0.023 4.023 23 C -0.226 4.226 24 H 0.092 0.908 25 H 0.137 0.863 26 H 0.109 0.891 27 H 0.111 0.889 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.121 0.879 33 H 0.086 0.914 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.813 -8.886 2.272 9.207 hybrid contribution 0.597 0.840 -0.020 1.031 sum 1.409 -8.045 2.252 8.473 Atomic orbital electron populations 1.69814 1.07600 1.29328 1.35112 1.25903 0.94720 1.01350 0.92168 0.86304 0.80484 0.80533 0.79370 1.19236 1.20292 1.18604 1.19571 0.98172 0.91200 1.40392 0.90378 1.17567 0.91286 0.91822 0.88750 1.21408 0.98898 0.96938 1.00236 1.20684 0.98773 0.93167 0.99884 1.20245 1.00480 0.96484 1.06872 1.19446 0.97753 0.92390 1.00875 1.20216 0.97755 0.86909 0.83563 0.89941 1.92758 1.95684 1.73407 1.57585 1.23297 0.96359 0.97327 0.98853 0.87900 1.23027 0.98944 0.95265 1.02038 1.23085 0.86461 0.94582 0.98669 1.88849 1.29593 1.46567 1.65163 1.23773 0.95142 0.89840 0.93574 1.20786 1.03175 0.92203 1.06431 0.90788 0.86307 0.89146 0.88907 0.90346 0.90351 0.92665 0.90214 0.87876 0.91384 0.88807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.12 10.95 55.55 0.61 -19.51 16 2 C 0.08 1.88 5.14 -17.34 -0.09 1.79 16 3 Si 0.91 18.31 29.60 -169.99 -5.03 13.28 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.46 -12.03 9.05 -37.74 -0.34 -12.37 16 8 H 0.08 1.95 7.91 -52.49 -0.41 1.53 16 9 C 0.11 2.81 5.58 -106.82 -0.60 2.22 16 10 C -0.16 -3.96 8.70 -38.87 -0.34 -4.30 16 11 C -0.11 -2.45 10.02 -39.66 -0.40 -2.85 16 12 C -0.22 -4.80 8.38 -39.29 -0.33 -5.13 16 13 C -0.10 -2.23 5.03 -104.70 -0.53 -2.75 16 14 C 0.15 2.65 3.26 -27.88 -0.09 2.56 16 15 H 0.08 1.32 7.87 -51.93 -0.41 0.91 16 16 F -0.21 -3.89 15.44 2.25 0.03 -3.85 16 17 C -0.14 -2.15 2.96 -88.61 -0.26 -2.41 16 18 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 19 C -0.16 -1.93 6.54 -25.20 -0.16 -2.09 16 20 C 0.05 0.61 7.70 37.73 0.29 0.90 16 21 O -0.38 -6.04 11.52 -35.23 -0.41 -6.45 16 22 C 0.05 0.84 5.30 38.21 0.20 1.04 16 23 C -0.21 -4.86 9.41 -38.87 -0.37 -5.23 16 24 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 25 H 0.12 3.12 6.16 -52.49 -0.32 2.80 16 26 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 27 H 0.09 1.82 5.76 -52.48 -0.30 1.51 16 28 H 0.08 0.94 7.62 -51.93 -0.40 0.54 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.10 1.71 6.89 -51.93 -0.36 1.36 16 33 H 0.07 1.10 6.87 -51.93 -0.36 0.74 16 34 H 0.09 2.06 7.94 -52.49 -0.42 1.64 16 LS Contribution 281.84 15.07 4.25 4.25 Total: -1.00 -27.07 281.84 -7.78 -34.85 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -4.22 Total: 6.06 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: -3.01 Total: -28.63 kcal Atomic # 7 Polarization: -20.12 SS G_CDS: 0.61 Total: -19.51 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.41 Total: -6.45 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.03 Total: -3.85 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.07 -7.78 -34.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260023463.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.784 kcal (2) G-P(sol) polarization free energy of solvation -27.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds