Wall clock time and date at job start Mon Mar 30 2020 06:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86798 * 119.99529 * 2 1 4 4 H 1.48497 * 109.47171 * 269.99798 * 3 2 1 5 5 H 1.48501 * 109.47168 * 29.99737 * 3 2 1 6 6 H 1.48496 * 109.47106 * 150.00113 * 3 2 1 7 7 C 1.39939 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99971 * 197.86012 * 7 2 1 9 9 C 1.41395 * 120.00390 * 17.86472 * 7 2 1 10 10 C 1.40737 * 120.24188 * 24.35634 * 9 7 2 11 11 C 1.37599 * 119.74197 * 180.02562 * 10 9 7 12 12 C 1.38654 * 120.25018 * 359.73203 * 11 10 9 13 13 C 1.38612 * 120.50073 * 0.54555 * 12 11 10 14 14 C 1.50699 * 119.87731 * 179.72160 * 13 12 11 15 15 H 1.09004 * 109.47352 * 174.73171 * 14 13 12 16 16 F 1.39904 * 109.46888 * 54.73114 * 14 13 12 17 17 C 1.53003 * 109.47071 * 294.73320 * 14 13 12 18 18 H 1.08991 * 110.83243 * 308.64311 * 17 14 13 19 19 C 1.54817 * 110.90406 * 184.99614 * 17 14 13 20 20 C 1.54104 * 104.18700 * 220.92015 * 19 17 14 21 21 O 1.43741 * 107.29178 * 357.97232 * 20 19 17 22 22 C 1.44380 * 106.97693 * 26.51419 * 21 20 19 23 23 C 1.37645 * 120.24802 * 359.45787 * 13 12 11 24 24 H 0.96993 * 120.00516 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.12623 * 0.05104 * 10 9 7 26 26 H 1.07999 * 119.87249 * 180.02562 * 11 10 9 27 27 H 1.08004 * 119.74941 * 180.29780 * 12 11 10 28 28 H 1.08995 * 110.49247 * 339.59751 * 19 17 14 29 29 H 1.09006 * 110.48181 * 102.24716 * 19 17 14 30 30 H 1.08993 * 109.87737 * 117.39451 * 20 19 17 31 31 H 1.08997 * 109.87911 * 238.55103 * 20 19 17 32 32 H 1.09007 * 110.61809 * 201.43541 * 22 21 20 33 33 H 1.08998 * 110.61697 * 78.44050 * 22 21 20 34 34 H 1.07997 * 120.12700 * 180.25065 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4395 2.6527 0.7000 6 1 3.5397 1.4403 0.7000 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2343 0.2874 9 6 1.3523 -2.4071 -0.3746 10 6 0.2206 -2.3626 -1.2100 11 6 -0.4099 -3.5320 -1.5682 12 6 0.0690 -4.7513 -1.1138 13 6 1.1793 -4.8067 -0.2859 14 6 1.6841 -6.1391 0.2049 15 1 2.6103 -5.9943 0.7610 16 9 1.9229 -6.9787 -0.8885 17 6 0.6352 -6.7769 1.1181 18 1 0.3201 -6.0786 1.8933 19 6 1.1699 -8.0895 1.7411 20 6 -0.0314 -9.0528 1.6812 21 8 -1.1377 -8.3222 1.1257 22 6 -0.5806 -7.2785 0.2980 23 6 1.8258 -3.6496 0.0853 24 1 -0.4850 0.8399 -0.0004 25 1 -0.1512 -1.4143 -1.5690 26 1 -1.2783 -3.5003 -2.2096 27 1 -0.4293 -5.6645 -1.4039 28 1 2.0013 -8.4795 1.1540 29 1 1.4755 -7.9244 2.7743 30 1 0.2077 -9.9042 1.0441 31 1 -0.2810 -9.3968 2.6848 32 1 -1.3039 -6.4758 0.1538 33 1 -0.2566 -7.6815 -0.6615 34 1 2.6932 -3.6953 0.7271 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260023463.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:03 Heat of formation + Delta-G solvation = -103.330455 kcal Electronic energy + Delta-G solvation = -18094.226745 eV Core-core repulsion = 15097.857024 eV Total energy + Delta-G solvation = -2996.369721 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.69222 -40.33781 -39.32698 -35.84465 -34.26511 -31.88214 -31.81510 -29.92517 -27.20975 -26.71469 -23.66897 -22.56693 -22.20566 -21.31648 -19.09427 -17.80156 -17.40814 -17.16695 -17.02172 -16.41186 -16.25089 -15.68210 -15.19380 -14.90529 -14.79972 -14.43954 -14.14797 -13.60737 -13.41320 -13.09382 -12.95652 -12.68718 -12.58315 -12.51548 -12.20384 -12.07808 -11.71771 -11.69655 -11.33487 -11.18363 -11.03561 -10.63505 -9.43935 -9.29244 -8.66072 -6.37211 0.91952 0.97833 1.38437 1.51247 1.51401 2.19990 2.67353 2.90987 3.38108 3.60957 3.67562 3.78309 3.95287 4.02542 4.22051 4.24261 4.32301 4.48732 4.63349 4.68752 4.79570 4.85229 4.90637 4.99895 5.04468 5.09532 5.17842 5.28107 5.44942 5.61974 5.86309 5.94049 6.05605 6.12670 6.30863 6.65645 6.90950 6.98897 8.31543 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.040508 B = 0.005145 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.053916 B = 5441.035349 C = 5574.811174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.036 3.964 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.500 4.500 8 H 0.077 0.923 9 C 0.077 3.923 10 C -0.184 4.184 11 C -0.112 4.112 12 C -0.220 4.220 13 C -0.102 4.102 14 C 0.156 3.844 15 H 0.102 0.898 16 F -0.215 7.215 17 C -0.139 4.139 18 H 0.095 0.905 19 C -0.147 4.147 20 C 0.042 3.958 21 O -0.401 6.401 22 C 0.054 3.946 23 C -0.220 4.220 24 H 0.288 0.712 25 H 0.101 0.899 26 H 0.111 0.889 27 H 0.116 0.884 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.923 -10.126 2.897 10.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.181 1.181 7 C -0.529 4.529 8 H 0.095 0.905 9 C 0.075 3.925 10 C -0.203 4.203 11 C -0.130 4.130 12 C -0.239 4.239 13 C -0.102 4.102 14 C 0.120 3.880 15 H 0.119 0.881 16 F -0.196 7.196 17 C -0.158 4.158 18 H 0.114 0.886 19 C -0.184 4.184 20 C -0.034 4.034 21 O -0.320 6.320 22 C -0.023 4.023 23 C -0.239 4.239 24 H 0.099 0.901 25 H 0.119 0.881 26 H 0.129 0.871 27 H 0.134 0.866 28 H 0.105 0.895 29 H 0.118 0.882 30 H 0.086 0.914 31 H 0.119 0.881 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.502 -10.054 2.933 10.580 hybrid contribution 0.329 1.058 -0.235 1.133 sum 1.831 -8.996 2.698 9.569 Atomic orbital electron populations 1.69869 1.09031 1.30602 1.35636 1.26743 0.95452 1.04509 0.91162 0.85208 0.79132 0.75949 0.79469 1.18828 1.19285 1.18090 1.19830 0.98431 0.92420 1.42229 0.90469 1.17945 0.92004 0.93080 0.89463 1.21369 1.00023 0.97153 1.01784 1.20970 0.99167 0.92998 0.99845 1.20575 1.00389 0.96797 1.06117 1.19852 0.96909 0.93866 0.99585 1.20232 0.99149 0.84958 0.83629 0.88063 1.92756 1.95753 1.73172 1.57911 1.23229 0.95665 0.98627 0.98257 0.88626 1.23024 0.99039 0.93165 1.03169 1.23344 0.85530 0.94531 1.00019 1.88831 1.31183 1.46730 1.65274 1.23662 0.94991 0.89814 0.93797 1.21002 1.03809 0.92291 1.06845 0.90108 0.88054 0.87114 0.86634 0.89545 0.88239 0.91388 0.88062 0.89208 0.91551 0.87787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.95 10.95 21.83 0.24 -42.72 16 2 C 0.04 1.81 5.14 85.25 0.44 2.25 16 3 Si 0.98 37.79 29.60 68.60 2.03 39.82 16 4 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 5 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 6 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 7 C -0.50 -26.64 9.05 23.46 0.21 -26.43 16 8 H 0.08 3.95 7.91 -2.91 -0.02 3.93 16 9 C 0.08 4.13 5.58 -21.29 -0.12 4.01 16 10 C -0.18 -9.67 8.70 22.73 0.20 -9.47 16 11 C -0.11 -5.17 10.02 22.22 0.22 -4.94 16 12 C -0.22 -9.35 8.38 22.46 0.19 -9.16 16 13 C -0.10 -4.26 5.03 -19.92 -0.10 -4.36 16 14 C 0.16 5.13 3.26 29.85 0.10 5.23 16 15 H 0.10 2.98 7.87 -2.39 -0.02 2.96 16 16 F -0.22 -7.31 15.44 44.97 0.69 -6.62 16 17 C -0.14 -3.98 2.96 -9.49 -0.03 -4.01 16 18 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 19 C -0.15 -3.14 6.54 31.59 0.21 -2.94 16 20 C 0.04 0.91 7.70 72.36 0.56 1.47 16 21 O -0.40 -11.82 11.52 -148.98 -1.72 -13.53 16 22 C 0.05 1.62 5.30 72.66 0.39 2.01 16 23 C -0.22 -10.43 9.41 22.73 0.21 -10.21 16 24 H 0.29 13.55 8.30 -92.71 -0.77 12.79 16 25 H 0.10 5.58 6.16 -2.91 -0.02 5.57 16 26 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 27 H 0.12 4.35 5.76 -2.91 -0.02 4.33 16 28 H 0.09 1.75 7.62 -2.39 -0.02 1.73 16 29 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.09 2.91 6.89 -2.38 -0.02 2.89 16 33 H 0.07 2.01 6.87 -2.39 -0.02 2.00 16 34 H 0.10 4.57 7.94 -2.91 -0.02 4.55 16 Total: -1.00 -58.74 281.84 4.82 -53.92 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 1.10 Total: 25.68 kcal Atomic # 6 Polarization: -59.03 SS G_CDS: 2.47 Total: -56.55 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.24 Total: -42.72 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -1.72 Total: -13.53 kcal Atomic # 9 Polarization: -7.31 SS G_CDS: 0.69 Total: -6.62 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.03 Total: 39.82 kcal Total: -58.74 4.82 -53.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260023463.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.408 kcal (2) G-P(sol) polarization free energy of solvation -58.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds