Wall clock time and date at job start Mon Mar 30 2020 06:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86805 * 119.99822 * 2 1 4 4 H 1.48499 * 109.47203 * 239.99921 * 3 2 1 5 5 H 1.48497 * 109.47055 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47034 * 119.99992 * 3 2 1 7 7 C 1.39943 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99991 * 167.98654 * 7 2 1 9 9 C 1.41398 * 120.00106 * 347.97818 * 7 2 1 10 10 C 1.40739 * 120.24059 * 330.39374 * 9 7 2 11 11 C 1.37604 * 119.74151 * 180.02562 * 10 9 7 12 12 C 1.38661 * 120.24453 * 359.72410 * 11 10 9 13 13 C 1.38610 * 120.50250 * 0.55435 * 12 11 10 14 14 C 1.50697 * 119.87341 * 179.71993 * 13 12 11 15 15 H 1.09000 * 109.47563 * 184.69648 * 14 13 12 16 16 F 1.39902 * 109.47195 * 304.69908 * 14 13 12 17 17 C 1.53002 * 109.47127 * 64.69443 * 14 13 12 18 18 H 1.08992 * 110.75534 * 302.23799 * 17 14 13 19 19 C 1.55307 * 111.01927 * 65.83156 * 17 14 13 20 20 C 1.54952 * 100.94300 * 152.40212 * 19 17 14 21 21 O 1.43649 * 105.13202 * 323.55465 * 20 19 17 22 22 C 1.43233 * 109.97172 * 24.42975 * 21 20 19 23 23 C 1.37633 * 120.25136 * 359.44881 * 13 12 11 24 24 H 0.96998 * 120.00445 * 359.97438 * 1 2 3 25 25 H 1.07995 * 120.12944 * 0.03773 * 10 9 7 26 26 H 1.07990 * 119.87514 * 180.02562 * 11 10 9 27 27 H 1.08005 * 119.74145 * 180.29227 * 12 11 10 28 28 H 1.08998 * 111.12534 * 270.32075 * 19 17 14 29 29 H 1.09004 * 111.12492 * 34.48483 * 19 17 14 30 30 H 1.08995 * 110.31110 * 204.64362 * 20 19 17 31 31 H 1.09000 * 110.39428 * 82.50925 * 20 19 17 32 32 H 1.09006 * 109.82748 * 238.76893 * 22 21 20 33 33 H 1.09004 * 109.90657 * 117.84678 * 22 21 20 34 34 H 1.07996 * 120.13194 * 180.25752 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0702 -1.2220 -0.1952 9 6 1.3243 -2.4232 0.2540 10 6 0.1845 -2.4338 1.0794 11 6 -0.4727 -3.6185 1.3206 12 6 -0.0191 -4.7977 0.7493 13 6 1.1058 -4.7998 -0.0606 14 6 1.5900 -6.0906 -0.6692 15 1 2.5248 -5.9134 -1.2012 16 9 1.8009 -7.0332 0.3429 17 6 0.5389 -6.6192 -1.6473 18 1 -0.4169 -6.7667 -1.1447 19 6 0.3822 -5.6675 -2.8646 20 6 -0.0873 -6.6616 -3.9566 21 8 0.6326 -7.8763 -3.6925 22 6 1.0169 -7.9272 -2.3136 23 6 1.7789 -3.6267 -0.3157 24 1 -0.4851 0.8400 0.0004 25 1 -0.1732 -1.5157 1.5216 26 1 -1.3478 -3.6291 1.9533 27 1 -0.5438 -5.7221 0.9403 28 1 -0.3751 -4.9071 -2.6738 29 1 1.3355 -5.2116 -3.1321 30 1 0.1628 -6.2814 -4.9470 31 1 -1.1608 -6.8333 -3.8778 32 1 2.1011 -8.0078 -2.2346 33 1 0.5464 -8.7826 -1.8286 34 1 2.6526 -3.6300 -0.9503 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260023466.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:05 Heat of formation + Delta-G solvation = -92.456646 kcal Electronic energy + Delta-G solvation = -18078.785497 eV Core-core repulsion = 15082.887299 eV Total energy + Delta-G solvation = -2995.898197 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.19736 -39.25959 -37.61211 -34.11011 -32.89900 -30.06094 -29.92509 -29.10972 -25.40699 -24.91176 -22.19776 -21.31392 -20.74684 -19.81179 -17.34555 -16.57226 -16.12223 -15.56777 -15.28998 -14.86600 -14.71861 -14.39961 -13.95619 -13.28786 -13.18917 -13.05679 -12.53686 -12.31885 -11.80074 -11.45151 -11.33209 -11.25533 -11.10999 -10.89268 -10.80922 -10.67218 -10.51966 -10.32961 -9.61695 -9.48034 -9.44900 -9.25439 -7.59150 -7.41818 -6.78081 -4.45395 2.70028 2.78659 3.03757 3.06465 3.15010 3.89908 3.93654 4.49676 4.61041 4.68258 4.94409 5.22603 5.27848 5.32630 5.49214 5.57192 5.65296 5.73308 5.85320 5.92255 6.09813 6.20295 6.24715 6.38031 6.40819 6.79601 6.97379 7.02137 7.12413 7.24797 7.44770 7.72786 7.94323 7.95463 8.16080 8.53987 8.81631 8.86266 10.17762 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.029201 B = 0.005704 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.629934 B = 4907.620762 C = 5262.130207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.467 4.467 8 H 0.077 0.923 9 C 0.109 3.891 10 C -0.147 4.147 11 C -0.110 4.110 12 C -0.211 4.211 13 C -0.104 4.104 14 C 0.153 3.847 15 H 0.081 0.919 16 F -0.215 7.215 17 C -0.140 4.140 18 H 0.095 0.905 19 C -0.140 4.140 20 C 0.051 3.949 21 O -0.389 6.389 22 C 0.056 3.944 23 C -0.200 4.200 24 H 0.281 0.719 25 H 0.118 0.882 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.134 -6.798 -3.801 7.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.497 4.497 8 H 0.095 0.905 9 C 0.107 3.893 10 C -0.166 4.166 11 C -0.128 4.128 12 C -0.230 4.230 13 C -0.105 4.105 14 C 0.117 3.883 15 H 0.099 0.901 16 F -0.195 7.195 17 C -0.159 4.159 18 H 0.113 0.887 19 C -0.178 4.178 20 C -0.026 4.026 21 O -0.308 6.308 22 C -0.020 4.020 23 C -0.220 4.220 24 H 0.091 0.909 25 H 0.136 0.864 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.111 0.889 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.286 -6.813 -3.940 7.875 hybrid contribution 0.189 0.971 0.257 1.022 sum -0.097 -5.841 -3.683 6.906 Atomic orbital electron populations 1.69769 1.07440 1.29242 1.36477 1.25863 0.94805 1.01174 0.92309 0.86338 0.80028 0.80237 0.79931 1.19043 1.20351 1.18884 1.19500 0.96191 0.90538 1.43465 0.90525 1.17567 0.91465 0.91881 0.88433 1.21400 0.98585 0.96476 1.00185 1.20691 0.98879 0.93359 0.99905 1.20142 0.99855 0.96787 1.06245 1.19422 0.97588 0.92742 1.00710 1.20293 0.97671 0.85315 0.85035 0.90081 1.92786 1.96191 1.67157 1.63392 1.23280 1.00612 0.95077 0.96928 0.88693 1.23165 1.03625 0.98012 0.92995 1.23404 0.95999 0.83990 0.99163 1.88355 1.75221 1.40869 1.26374 1.23166 0.99972 0.97271 0.81609 1.20840 1.02754 0.92696 1.05663 0.90859 0.86397 0.89149 0.89372 0.88941 0.89906 0.89750 0.92254 0.91188 0.91318 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.33 10.97 55.55 0.61 -19.72 16 2 C 0.08 1.84 5.22 -17.34 -0.09 1.75 16 3 Si 0.91 18.35 29.58 -169.99 -5.03 13.32 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.47 -12.03 9.06 -37.74 -0.34 -12.37 16 8 H 0.08 1.90 7.87 -52.49 -0.41 1.48 16 9 C 0.11 2.80 5.53 -106.82 -0.59 2.21 16 10 C -0.15 -3.71 8.66 -38.87 -0.34 -4.05 16 11 C -0.11 -2.51 10.02 -39.66 -0.40 -2.91 16 12 C -0.21 -4.57 9.14 -39.29 -0.36 -4.93 16 13 C -0.10 -2.20 4.59 -104.71 -0.48 -2.68 16 14 C 0.15 2.68 2.92 -27.88 -0.08 2.60 16 15 H 0.08 1.33 7.86 -51.93 -0.41 0.92 16 16 F -0.21 -3.96 16.74 2.25 0.04 -3.92 16 17 C -0.14 -2.13 2.67 -88.67 -0.24 -2.37 16 18 H 0.09 1.47 7.69 -51.93 -0.40 1.07 16 19 C -0.14 -2.04 6.17 -24.48 -0.15 -2.19 16 20 C 0.05 0.65 7.78 38.19 0.30 0.95 16 21 O -0.39 -5.74 11.36 -35.23 -0.40 -6.14 16 22 C 0.06 0.79 7.22 37.88 0.27 1.06 16 23 C -0.20 -4.64 9.41 -38.87 -0.37 -5.00 16 24 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 25 H 0.12 3.08 6.34 -52.49 -0.33 2.75 16 26 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 27 H 0.09 1.75 7.88 -52.48 -0.41 1.34 16 28 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 29 H 0.08 1.21 8.04 -51.93 -0.42 0.79 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.94 7.82 -51.93 -0.41 0.53 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 2.04 7.94 -52.49 -0.42 1.63 16 LS Contribution 288.69 15.07 4.35 4.35 Total: -1.00 -26.77 288.69 -7.75 -34.51 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -4.45 Total: 5.52 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: -2.86 Total: -27.92 kcal Atomic # 7 Polarization: -20.33 SS G_CDS: 0.61 Total: -19.72 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.40 Total: -6.14 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.04 Total: -3.92 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.77 -7.75 -34.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260023466.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.945 kcal (2) G-P(sol) polarization free energy of solvation -26.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds