Wall clock time and date at job start Mon Mar 30 2020 06:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86805 * 119.99822 * 2 1 4 4 H 1.48499 * 109.47203 * 239.99921 * 3 2 1 5 5 H 1.48497 * 109.47055 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47034 * 119.99992 * 3 2 1 7 7 C 1.39943 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99991 * 167.98654 * 7 2 1 9 9 C 1.41398 * 120.00106 * 347.97818 * 7 2 1 10 10 C 1.40739 * 120.24059 * 330.39374 * 9 7 2 11 11 C 1.37604 * 119.74151 * 180.02562 * 10 9 7 12 12 C 1.38661 * 120.24453 * 359.72410 * 11 10 9 13 13 C 1.38610 * 120.50250 * 0.55435 * 12 11 10 14 14 C 1.50697 * 119.87341 * 179.71993 * 13 12 11 15 15 H 1.09000 * 109.47563 * 184.69648 * 14 13 12 16 16 F 1.39902 * 109.47195 * 304.69908 * 14 13 12 17 17 C 1.53002 * 109.47127 * 64.69443 * 14 13 12 18 18 H 1.08992 * 110.75534 * 302.23799 * 17 14 13 19 19 C 1.55307 * 111.01927 * 65.83156 * 17 14 13 20 20 C 1.54952 * 100.94300 * 152.40212 * 19 17 14 21 21 O 1.43649 * 105.13202 * 323.55465 * 20 19 17 22 22 C 1.43233 * 109.97172 * 24.42975 * 21 20 19 23 23 C 1.37633 * 120.25136 * 359.44881 * 13 12 11 24 24 H 0.96998 * 120.00445 * 359.97438 * 1 2 3 25 25 H 1.07995 * 120.12944 * 0.03773 * 10 9 7 26 26 H 1.07990 * 119.87514 * 180.02562 * 11 10 9 27 27 H 1.08005 * 119.74145 * 180.29227 * 12 11 10 28 28 H 1.08998 * 111.12534 * 270.32075 * 19 17 14 29 29 H 1.09004 * 111.12492 * 34.48483 * 19 17 14 30 30 H 1.08995 * 110.31110 * 204.64362 * 20 19 17 31 31 H 1.09000 * 110.39428 * 82.50925 * 20 19 17 32 32 H 1.09006 * 109.82748 * 238.76893 * 22 21 20 33 33 H 1.09004 * 109.90657 * 117.84678 * 22 21 20 34 34 H 1.07996 * 120.13194 * 180.25752 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0702 -1.2220 -0.1952 9 6 1.3243 -2.4232 0.2540 10 6 0.1845 -2.4338 1.0794 11 6 -0.4727 -3.6185 1.3206 12 6 -0.0191 -4.7977 0.7493 13 6 1.1058 -4.7998 -0.0606 14 6 1.5900 -6.0906 -0.6692 15 1 2.5248 -5.9134 -1.2012 16 9 1.8009 -7.0332 0.3429 17 6 0.5389 -6.6192 -1.6473 18 1 -0.4169 -6.7667 -1.1447 19 6 0.3822 -5.6675 -2.8646 20 6 -0.0873 -6.6616 -3.9566 21 8 0.6326 -7.8763 -3.6925 22 6 1.0169 -7.9272 -2.3136 23 6 1.7789 -3.6267 -0.3157 24 1 -0.4851 0.8400 0.0004 25 1 -0.1732 -1.5157 1.5216 26 1 -1.3478 -3.6291 1.9533 27 1 -0.5438 -5.7221 0.9403 28 1 -0.3751 -4.9071 -2.6738 29 1 1.3355 -5.2116 -3.1321 30 1 0.1628 -6.2814 -4.9470 31 1 -1.1608 -6.8333 -3.8778 32 1 2.1011 -8.0078 -2.2346 33 1 0.5464 -8.7826 -1.8286 34 1 2.6526 -3.6300 -0.9503 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260023466.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:05 Heat of formation + Delta-G solvation = -105.457021 kcal Electronic energy + Delta-G solvation = -18079.349235 eV Core-core repulsion = 15082.887299 eV Total energy + Delta-G solvation = -2996.461936 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.65278 -40.43290 -39.35010 -35.82441 -34.35959 -31.77777 -31.54723 -30.33087 -27.24467 -26.41036 -23.28131 -22.91914 -22.42862 -21.33523 -19.06789 -17.88381 -17.37679 -17.27780 -16.68104 -16.46650 -16.20213 -15.82086 -15.20274 -14.99665 -14.85389 -14.21546 -14.18340 -13.70503 -13.57332 -13.03812 -12.87286 -12.66004 -12.54851 -12.47968 -12.30876 -12.10213 -11.98536 -11.70366 -11.32764 -11.22923 -11.05986 -10.52288 -9.42027 -9.26270 -8.61175 -6.38730 0.92152 0.97223 1.38860 1.49492 1.51672 2.21197 2.71848 2.85084 3.30755 3.43739 3.66392 3.71060 3.89712 4.10156 4.22162 4.24417 4.38882 4.49195 4.57259 4.65002 4.76407 4.85143 4.92084 4.99131 5.02892 5.10181 5.16267 5.26698 5.43833 5.62458 5.91886 5.96244 6.06365 6.10587 6.31043 6.65782 6.92519 6.98411 8.36491 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.029201 B = 0.005704 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.629934 B = 4907.620762 C = 5262.130207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.035 3.965 3 Si 0.981 3.019 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.262 1.262 7 C -0.502 4.502 8 H 0.076 0.924 9 C 0.079 3.921 10 C -0.174 4.174 11 C -0.113 4.113 12 C -0.211 4.211 13 C -0.099 4.099 14 C 0.156 3.844 15 H 0.095 0.905 16 F -0.217 7.217 17 C -0.136 4.136 18 H 0.094 0.906 19 C -0.141 4.141 20 C 0.054 3.946 21 O -0.401 6.401 22 C 0.060 3.940 23 C -0.210 4.210 24 H 0.287 0.713 25 H 0.100 0.900 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.051 -7.628 -4.473 8.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.187 1.187 7 C -0.532 4.532 8 H 0.094 0.906 9 C 0.077 3.923 10 C -0.194 4.194 11 C -0.131 4.131 12 C -0.230 4.230 13 C -0.099 4.099 14 C 0.120 3.880 15 H 0.113 0.887 16 F -0.198 7.198 17 C -0.155 4.155 18 H 0.112 0.888 19 C -0.179 4.179 20 C -0.022 4.022 21 O -0.321 6.321 22 C -0.016 4.016 23 C -0.229 4.229 24 H 0.097 0.903 25 H 0.118 0.882 26 H 0.130 0.870 27 H 0.129 0.871 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.120 0.880 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.106 -7.663 -4.612 8.944 hybrid contribution 0.090 1.123 0.481 1.225 sum -0.015 -6.539 -4.132 7.735 Atomic orbital electron populations 1.69835 1.08813 1.30409 1.37016 1.26685 0.95555 1.04290 0.91350 0.85267 0.78710 0.75853 0.79976 1.18382 1.19360 1.18655 1.19763 0.96408 0.91716 1.45328 0.90625 1.17928 0.92179 0.93044 0.89187 1.21346 0.99677 0.96783 1.01560 1.20958 0.99238 0.93006 0.99892 1.20464 0.99890 0.97173 1.05485 1.19758 0.96720 0.93810 0.99607 1.20322 0.99014 0.83631 0.85016 0.88740 1.92782 1.96282 1.66991 1.63737 1.23206 0.99694 0.96053 0.96526 0.88791 1.23143 1.03158 0.98036 0.93556 1.23490 0.96519 0.82846 0.99333 1.88345 1.75585 1.41516 1.26615 1.23171 1.00505 0.96676 0.81278 1.21010 1.03284 0.92817 1.05837 0.90293 0.88237 0.87042 0.87099 0.90252 0.90232 0.88010 0.91057 0.90561 0.90066 0.87944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.19 10.97 21.83 0.24 -42.95 16 2 C 0.03 1.74 5.22 85.26 0.45 2.18 16 3 Si 0.98 37.81 29.58 68.60 2.03 39.84 16 4 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 5 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 6 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 7 C -0.50 -26.56 9.06 23.46 0.21 -26.35 16 8 H 0.08 3.85 7.87 -2.91 -0.02 3.82 16 9 C 0.08 4.15 5.53 -21.29 -0.12 4.03 16 10 C -0.17 -9.02 8.66 22.73 0.20 -8.83 16 11 C -0.11 -5.12 10.02 22.22 0.22 -4.90 16 12 C -0.21 -8.87 9.14 22.46 0.21 -8.66 16 13 C -0.10 -4.06 4.59 -19.92 -0.09 -4.15 16 14 C 0.16 5.16 2.92 29.85 0.09 5.25 16 15 H 0.09 2.90 7.86 -2.39 -0.02 2.88 16 16 F -0.22 -7.51 16.74 44.97 0.75 -6.75 16 17 C -0.14 -3.83 2.67 -9.53 -0.03 -3.86 16 18 H 0.09 2.69 7.69 -2.39 -0.02 2.67 16 19 C -0.14 -3.87 6.17 32.05 0.20 -3.67 16 20 C 0.05 1.26 7.78 72.65 0.57 1.82 16 21 O -0.40 -10.74 11.36 -148.98 -1.69 -12.44 16 22 C 0.06 1.51 7.22 72.45 0.52 2.03 16 23 C -0.21 -9.78 9.41 22.73 0.21 -9.57 16 24 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16 25 H 0.10 5.43 6.34 -2.91 -0.02 5.41 16 26 H 0.11 4.47 8.06 -2.92 -0.02 4.44 16 27 H 0.11 4.14 7.88 -2.91 -0.02 4.11 16 28 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.08 2.22 8.04 -2.38 -0.02 2.20 16 30 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.08 1.83 7.82 -2.38 -0.02 1.81 16 33 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.10 4.47 7.94 -2.91 -0.02 4.45 16 Total: -1.00 -57.13 288.69 5.05 -52.08 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 1.09 Total: 24.88 kcal Atomic # 6 Polarization: -57.30 SS G_CDS: 2.63 Total: -54.66 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 0.24 Total: -42.95 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -1.69 Total: -12.44 kcal Atomic # 9 Polarization: -7.51 SS G_CDS: 0.75 Total: -6.75 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal Total: -57.13 5.05 -52.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260023466.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.377 kcal (2) G-P(sol) polarization free energy of solvation -57.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds