Wall clock time and date at job start Mon Mar 30 2020 05:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.39855 * 125.41673 * 2 1 4 4 C 1.30514 * 110.06032 * 180.02562 * 3 2 1 5 5 O 1.35928 * 126.15644 * 179.97438 * 4 3 2 6 6 C 1.42897 * 117.00301 * 0.02908 * 5 4 3 7 7 C 1.50695 * 109.47399 * 180.02562 * 6 5 4 8 8 H 1.07996 * 120.00071 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00281 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99574 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00315 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46717 * 60.00185 * 11 9 7 13 13 H 1.48497 * 109.46976 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47194 * 300.00123 * 11 9 7 15 15 C 1.46300 * 107.68734 * 0.02562 * 4 3 2 16 16 C 1.39840 * 133.90778 * 179.97438 * 15 4 3 17 17 C 1.36425 * 119.81998 * 180.02562 * 16 15 4 18 18 C 1.39192 * 120.60104 * 359.97438 * 17 16 15 19 19 F 1.35100 * 119.69848 * 179.97438 * 18 17 16 20 20 C 1.37799 * 120.60098 * 0.02562 * 18 17 16 21 21 C 1.37051 * 125.42004 * 180.02562 * 2 1 3 22 22 H 1.08994 * 109.46986 * 89.97689 * 1 2 3 23 23 H 1.08996 * 109.47244 * 209.97811 * 1 2 3 24 24 H 1.09007 * 109.47235 * 329.97816 * 1 2 3 25 25 H 1.09000 * 109.46946 * 300.00041 * 6 5 4 26 26 H 1.08999 * 109.47011 * 59.99241 * 6 5 4 27 27 H 0.97000 * 119.99860 * 179.97438 * 10 9 7 28 28 H 1.07999 * 120.09163 * 359.97438 * 16 15 4 29 29 H 1.08002 * 119.69987 * 179.72415 * 17 16 15 30 30 H 1.08005 * 120.14027 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2755 1.1398 0.0000 4 6 3.5340 0.7941 -0.0005 5 8 4.5980 1.6401 -0.0012 6 6 4.3135 3.0404 -0.0007 7 6 5.6058 3.8156 -0.0022 8 1 6.5499 3.2914 -0.0038 9 6 5.5828 5.1942 -0.0025 10 7 4.4330 5.8326 -0.0020 11 14 7.1846 6.1551 -0.0036 12 1 7.9685 5.8091 -1.2165 13 1 6.8889 7.6103 -0.0032 14 1 7.9699 5.8097 1.2085 15 6 3.5935 -0.6677 -0.0016 16 6 4.6396 -1.5957 -0.0029 17 6 4.3616 -2.9313 -0.0042 18 6 3.0443 -3.3809 -0.0036 19 9 2.7899 -4.7077 -0.0053 20 6 1.9973 -2.4849 -0.0022 21 6 2.2593 -1.1169 -0.0005 22 1 -0.3633 0.0004 -1.0276 23 1 -0.3633 -0.8901 0.5135 24 1 -0.3634 0.8898 0.5142 25 1 3.7369 3.2944 -0.8901 26 1 3.7382 3.2939 0.8898 27 1 4.4167 6.8025 -0.0018 28 1 5.6648 -1.2560 -0.0038 29 1 5.1711 -3.6463 -0.0097 30 1 0.9780 -2.8420 -0.0022 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260029993.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:05 Heat of formation + Delta-G solvation = 5.980153 kcal Electronic energy + Delta-G solvation = -17235.441602 eV Core-core repulsion = 14140.271601 eV Total energy + Delta-G solvation = -3095.170001 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.96473 -41.04149 -37.65768 -36.59467 -33.12390 -32.43385 -30.43913 -29.31919 -27.84512 -25.85850 -23.42962 -22.57901 -21.93764 -20.19509 -17.79952 -17.38046 -16.52207 -16.24708 -15.87142 -15.76665 -15.36194 -14.95006 -14.53655 -14.26456 -13.97678 -13.40144 -13.19241 -12.67407 -12.66109 -12.35098 -11.77296 -11.33452 -11.18719 -11.03603 -10.97616 -10.45264 -10.39335 -10.07808 -9.37395 -9.29118 -8.54323 -8.42538 -7.46994 -6.23703 -4.29066 0.90746 1.44675 2.51292 2.86325 3.26123 3.28896 3.31742 3.71887 3.78721 4.20655 4.35108 4.56477 4.67261 4.99462 5.12851 5.23517 5.26394 5.30833 5.40764 5.52955 5.78862 5.90271 6.07253 6.25247 6.35861 6.77378 7.00219 7.16285 7.19238 7.61132 7.84390 8.04925 8.37231 8.81352 9.35499 10.87087 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.035760 B = 0.004872 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.812372 B = 5745.870030 C = 6508.236096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.403 5.403 3 N -0.308 5.308 4 C 0.308 3.692 5 O -0.287 6.287 6 C 0.198 3.802 7 C -0.529 4.529 8 H 0.071 0.929 9 C 0.062 3.938 10 N -0.891 5.891 11 Si 0.915 3.085 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.273 1.273 15 C -0.185 4.185 16 C 0.013 3.987 17 C -0.211 4.211 18 C 0.151 3.849 19 F -0.138 7.138 20 C -0.195 4.195 21 C 0.171 3.829 22 H 0.067 0.933 23 H 0.080 0.920 24 H 0.088 0.912 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.268 0.732 28 H 0.142 0.858 29 H 0.137 0.863 30 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.616 -15.717 0.081 16.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.192 5.192 3 N -0.142 5.142 4 C 0.093 3.907 5 O -0.188 6.188 6 C 0.126 3.874 7 C -0.567 4.567 8 H 0.089 0.911 9 C -0.141 4.141 10 N -0.529 5.529 11 Si 0.741 3.259 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.198 1.198 15 C -0.194 4.194 16 C -0.008 4.008 17 C -0.231 4.231 18 C 0.130 3.870 19 F -0.117 7.117 20 C -0.218 4.218 21 C 0.053 3.947 22 H 0.085 0.915 23 H 0.099 0.901 24 H 0.107 0.893 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.078 0.922 28 H 0.160 0.840 29 H 0.155 0.845 30 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.310 -14.519 0.081 15.831 hybrid contribution 0.842 -0.046 -0.014 0.843 sum -5.468 -14.565 0.067 15.558 Atomic orbital electron populations 1.21674 0.74091 1.03982 1.02775 1.47721 1.05468 1.00291 1.65729 1.77095 1.01045 1.06447 1.29649 1.21880 0.87036 0.88692 0.93053 1.86354 1.24813 1.21315 1.86294 1.20689 0.98570 0.70267 0.97881 1.20923 0.92069 0.90749 1.52972 0.91077 1.24931 0.97442 0.97072 0.94611 1.69968 1.24924 1.08946 1.49020 0.86286 0.82297 0.78297 0.78995 1.19808 1.20970 1.19812 1.19290 0.93331 0.90765 1.16027 1.20254 0.98866 0.90669 0.90970 1.20507 0.94855 0.96436 1.11332 1.17288 0.93402 0.76772 0.99585 1.91488 1.95099 1.31454 1.93660 1.19651 0.99283 0.89094 1.13769 1.18299 0.90004 0.88962 0.97439 0.91458 0.90141 0.89312 0.95599 0.95596 0.92240 0.84015 0.84467 0.84643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.30 11.39 59.85 0.68 1.98 16 2 N -0.40 -6.72 4.05 -65.48 -0.26 -6.98 16 3 N -0.31 -6.53 11.81 31.79 0.38 -6.15 16 4 C 0.31 6.69 8.14 -14.87 -0.12 6.56 16 5 O -0.29 -7.06 10.20 -19.51 -0.20 -7.26 16 6 C 0.20 5.46 5.38 36.00 0.19 5.65 16 7 C -0.53 -15.18 9.43 -34.44 -0.32 -15.51 16 8 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 11 Si 0.91 21.25 29.54 -169.99 -5.02 16.23 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 15 C -0.19 -3.30 6.37 -105.10 -0.67 -3.97 16 16 C 0.01 0.18 10.05 -39.64 -0.40 -0.21 16 17 C -0.21 -2.61 9.94 -39.88 -0.40 -3.01 16 18 C 0.15 1.92 7.28 -39.39 -0.29 1.63 16 19 F -0.14 -1.68 17.25 2.25 0.04 -1.64 16 20 C -0.19 -2.51 9.98 -39.35 -0.39 -2.90 16 21 C 0.17 2.72 6.86 -84.18 -0.58 2.15 16 22 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.08 0.65 8.13 -51.93 -0.42 0.23 16 24 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 28 H 0.14 1.85 8.06 -52.49 -0.42 1.43 16 29 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 LS Contribution 278.74 15.07 4.20 4.20 Total: -1.00 -31.72 278.74 -5.45 -37.17 By element: Atomic # 1 Polarization: -1.19 SS G_CDS: -2.93 Total: -4.11 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -2.39 Total: -5.98 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.85 Total: -38.61 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.20 Total: -7.26 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.72 -5.45 -37.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260029993.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.151 kcal (2) G-P(sol) polarization free energy of solvation -31.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds