Wall clock time and date at job start Mon Mar 30 2020 05:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.39855 * 125.41673 * 2 1 4 4 C 1.30514 * 110.06032 * 180.02562 * 3 2 1 5 5 O 1.35928 * 126.15644 * 179.97438 * 4 3 2 6 6 C 1.42897 * 117.00301 * 0.02908 * 5 4 3 7 7 C 1.50695 * 109.47399 * 180.02562 * 6 5 4 8 8 H 1.07996 * 120.00071 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00281 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99574 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00315 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46717 * 60.00185 * 11 9 7 13 13 H 1.48497 * 109.46976 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47194 * 300.00123 * 11 9 7 15 15 C 1.46300 * 107.68734 * 0.02562 * 4 3 2 16 16 C 1.39840 * 133.90778 * 179.97438 * 15 4 3 17 17 C 1.36425 * 119.81998 * 180.02562 * 16 15 4 18 18 C 1.39192 * 120.60104 * 359.97438 * 17 16 15 19 19 F 1.35100 * 119.69848 * 179.97438 * 18 17 16 20 20 C 1.37799 * 120.60098 * 0.02562 * 18 17 16 21 21 C 1.37051 * 125.42004 * 180.02562 * 2 1 3 22 22 H 1.08994 * 109.46986 * 89.97689 * 1 2 3 23 23 H 1.08996 * 109.47244 * 209.97811 * 1 2 3 24 24 H 1.09007 * 109.47235 * 329.97816 * 1 2 3 25 25 H 1.09000 * 109.46946 * 300.00041 * 6 5 4 26 26 H 1.08999 * 109.47011 * 59.99241 * 6 5 4 27 27 H 0.97000 * 119.99860 * 179.97438 * 10 9 7 28 28 H 1.07999 * 120.09163 * 359.97438 * 16 15 4 29 29 H 1.08002 * 119.69987 * 179.72415 * 17 16 15 30 30 H 1.08005 * 120.14027 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2755 1.1398 0.0000 4 6 3.5340 0.7941 -0.0005 5 8 4.5980 1.6401 -0.0012 6 6 4.3135 3.0404 -0.0007 7 6 5.6058 3.8156 -0.0022 8 1 6.5499 3.2914 -0.0038 9 6 5.5828 5.1942 -0.0025 10 7 4.4330 5.8326 -0.0020 11 14 7.1846 6.1551 -0.0036 12 1 7.9685 5.8091 -1.2165 13 1 6.8889 7.6103 -0.0032 14 1 7.9699 5.8097 1.2085 15 6 3.5935 -0.6677 -0.0016 16 6 4.6396 -1.5957 -0.0029 17 6 4.3616 -2.9313 -0.0042 18 6 3.0443 -3.3809 -0.0036 19 9 2.7899 -4.7077 -0.0053 20 6 1.9973 -2.4849 -0.0022 21 6 2.2593 -1.1169 -0.0005 22 1 -0.3633 0.0004 -1.0276 23 1 -0.3633 -0.8901 0.5135 24 1 -0.3634 0.8898 0.5142 25 1 3.7369 3.2944 -0.8901 26 1 3.7382 3.2939 0.8898 27 1 4.4167 6.8025 -0.0018 28 1 5.6648 -1.2560 -0.0038 29 1 5.1711 -3.6463 -0.0097 30 1 0.9780 -2.8420 -0.0022 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260029993.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:05 Heat of formation + Delta-G solvation = -15.988006 kcal Electronic energy + Delta-G solvation = -17236.394213 eV Core-core repulsion = 14140.271601 eV Total energy + Delta-G solvation = -3096.122612 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.086 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.96006 -42.36594 -39.38941 -37.83657 -35.15251 -33.86928 -31.50941 -30.59776 -29.91182 -27.07227 -25.24984 -24.01505 -23.15244 -21.66782 -19.15054 -19.00874 -18.13009 -17.53107 -17.24271 -17.23332 -16.55714 -16.55437 -15.98410 -15.79029 -15.13848 -14.98914 -14.34698 -13.90658 -13.85744 -13.76769 -13.29007 -13.05347 -13.00069 -12.55745 -12.28429 -12.20008 -11.94341 -11.69296 -11.50002 -10.84835 -10.54958 -9.65781 -8.77207 -8.40097 -6.56899 -0.26626 0.33257 1.27258 1.38585 1.40322 1.45552 1.54110 2.14883 2.44493 2.54224 2.94392 3.12742 3.40058 3.54372 3.95811 4.04602 4.18417 4.35563 4.43717 4.49847 4.66986 4.74418 4.86317 4.91457 4.93265 5.10650 5.26275 5.46956 5.71306 5.74654 6.03468 6.40349 6.49382 6.70908 7.14926 8.72218 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.035760 B = 0.004872 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.812372 B = 5745.870030 C = 6508.236096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.401 5.401 3 N -0.343 5.343 4 C 0.269 3.731 5 O -0.300 6.300 6 C 0.221 3.779 7 C -0.560 4.560 8 H 0.074 0.926 9 C 0.011 3.989 10 N -0.927 5.927 11 Si 0.994 3.006 12 H -0.262 1.262 13 H -0.274 1.274 14 H -0.262 1.262 15 C -0.211 4.211 16 C 0.000 4.000 17 C -0.190 4.190 18 C 0.158 3.842 19 F -0.129 7.129 20 C -0.181 4.181 21 C 0.164 3.836 22 H 0.083 0.917 23 H 0.120 0.880 24 H 0.085 0.915 25 H -0.003 1.003 26 H -0.003 1.003 27 H 0.274 0.726 28 H 0.149 0.851 29 H 0.170 0.830 30 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.286 -17.841 0.088 18.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.193 5.193 3 N -0.178 5.178 4 C 0.055 3.945 5 O -0.202 6.202 6 C 0.148 3.852 7 C -0.597 4.597 8 H 0.093 0.907 9 C -0.189 4.189 10 N -0.565 5.565 11 Si 0.815 3.185 12 H -0.186 1.186 13 H -0.199 1.199 14 H -0.186 1.186 15 C -0.219 4.219 16 C -0.020 4.020 17 C -0.210 4.210 18 C 0.136 3.864 19 F -0.107 7.107 20 C -0.204 4.204 21 C 0.046 3.954 22 H 0.102 0.898 23 H 0.138 0.862 24 H 0.104 0.896 25 H 0.015 0.985 26 H 0.015 0.985 27 H 0.083 0.917 28 H 0.167 0.833 29 H 0.188 0.812 30 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -6.020 -16.686 0.088 17.739 hybrid contribution 0.575 0.401 -0.018 0.701 sum -5.445 -16.285 0.070 17.172 Atomic orbital electron populations 1.22139 0.71169 1.05814 1.04448 1.48037 1.06783 0.99248 1.65205 1.76885 1.01757 1.09871 1.29239 1.22223 0.86743 0.90097 0.95406 1.86258 1.26593 1.19937 1.87435 1.20133 0.97670 0.72397 0.95044 1.21288 0.92379 0.91811 1.54226 0.90743 1.26051 1.01715 0.97866 0.93219 1.70097 1.27626 1.09615 1.49148 0.85084 0.77092 0.76650 0.79687 1.18602 1.19913 1.18605 1.19496 0.95555 0.88880 1.18006 1.20407 0.98626 0.91165 0.91838 1.20818 0.95933 0.95821 1.08461 1.17339 0.93417 0.77091 0.98584 1.91525 1.95038 1.30726 1.93431 1.19925 1.01224 0.87339 1.11932 1.18551 0.88984 0.89901 0.97958 0.89825 0.86217 0.89603 0.98515 0.98484 0.91682 0.83304 0.81228 0.81223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.16 11.39 127.77 1.46 3.61 16 2 N -0.40 -13.35 4.05 -361.06 -1.46 -14.81 16 3 N -0.34 -15.38 11.81 -166.91 -1.97 -17.35 16 4 C 0.27 12.38 8.14 86.99 0.71 13.09 16 5 O -0.30 -15.81 10.20 -92.74 -0.95 -16.75 16 6 C 0.22 13.03 5.38 71.23 0.38 13.42 16 7 C -0.56 -33.39 9.43 25.60 0.24 -33.15 16 8 H 0.07 4.27 7.81 -2.91 -0.02 4.25 16 9 C 0.01 0.64 5.46 84.65 0.46 1.10 16 10 N -0.93 -56.13 13.29 21.45 0.28 -55.84 16 11 Si 0.99 43.68 29.54 68.60 2.03 45.71 16 12 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 13 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 14 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 15 C -0.21 -7.61 6.37 -20.17 -0.13 -7.74 16 16 C 0.00 -0.01 10.05 22.23 0.22 0.22 16 17 C -0.19 -4.12 9.94 22.08 0.22 -3.90 16 18 C 0.16 3.40 7.28 22.40 0.16 3.56 16 19 F -0.13 -2.55 17.25 44.97 0.78 -1.78 16 20 C -0.18 -4.06 9.98 22.42 0.22 -3.84 16 21 C 0.16 5.02 6.86 39.20 0.27 5.29 16 22 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.12 1.54 8.13 -2.39 -0.02 1.52 16 24 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 25 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 26 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 27 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 28 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 29 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 30 H 0.17 2.60 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -72.48 278.74 4.09 -68.39 By element: Atomic # 1 Polarization: -0.39 SS G_CDS: 1.16 Total: 0.77 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 4.22 Total: -8.33 kcal Atomic # 7 Polarization: -84.86 SS G_CDS: -3.15 Total: -88.01 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.95 Total: -16.75 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.78 Total: -1.78 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -72.48 4.09 -68.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260029993.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.398 kcal (2) G-P(sol) polarization free energy of solvation -72.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds