Wall clock time and date at job start Mon Mar 30 2020 06:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38474 * 119.98556 * 2 1 4 4 F 1.35098 * 119.96942 * 0.02562 * 3 2 1 5 5 C 1.38436 * 120.06195 * 180.02562 * 3 2 1 6 6 C 1.38175 * 120.02975 * 0.02562 * 5 3 2 7 7 C 1.38688 * 119.96689 * 0.22468 * 6 5 3 8 8 O 1.35955 * 120.02727 * 179.72964 * 7 6 5 9 9 C 1.38134 * 119.98537 * 180.02562 * 2 1 3 10 10 C 1.50700 * 120.01317 * 0.02562 * 9 2 1 11 11 H 1.09000 * 109.47274 * 354.12163 * 10 9 2 12 12 C 1.50703 * 109.47053 * 234.12470 * 10 9 2 13 13 H 1.07997 * 119.99960 * 266.83855 * 12 10 9 14 14 C 1.37875 * 119.99779 * 86.82780 * 12 10 9 15 15 N 1.31511 * 120.00053 * 6.11086 * 14 12 10 16 16 Si 1.86804 * 120.00024 * 186.10355 * 14 12 10 17 17 H 1.48508 * 109.46825 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47219 * 120.00105 * 16 14 12 19 19 H 1.48496 * 109.47392 * 240.00862 * 16 14 12 20 20 C 1.53000 * 109.46919 * 114.12628 * 10 9 2 21 21 C 1.53002 * 117.49726 * 253.38147 * 20 10 9 22 22 C 1.53005 * 60.00135 * 252.51387 * 21 20 10 23 23 H 1.09000 * 109.47110 * 96.21708 * 1 2 3 24 24 H 1.09006 * 109.47352 * 216.21434 * 1 2 3 25 25 H 1.09000 * 109.47039 * 336.21546 * 1 2 3 26 26 H 1.07997 * 119.98530 * 179.97438 * 5 3 2 27 27 H 1.08002 * 120.01507 * 179.97438 * 6 5 3 28 28 H 0.96698 * 113.99527 * 90.00352 * 8 7 6 29 29 H 0.97010 * 120.00015 * 179.97438 * 15 14 12 30 30 H 1.08995 * 115.55352 * 39.09870 * 20 10 9 31 31 H 1.08998 * 117.49800 * 0.02562 * 21 20 10 32 32 H 1.09001 * 117.49541 * 145.02310 * 21 20 10 33 33 H 1.08998 * 117.49782 * 252.50609 * 22 21 20 34 34 H 1.09002 * 117.49422 * 107.49340 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1990 1.1994 0.0000 4 9 1.5226 2.3688 0.0005 5 6 3.5833 1.2012 -0.0005 6 6 4.2764 0.0059 -0.0016 7 6 3.5845 -1.1961 -0.0069 8 8 4.2653 -2.3729 -0.0135 9 6 2.1973 -1.1964 -0.0005 10 6 1.4438 -2.5015 -0.0017 11 1 0.3767 -2.3051 0.1033 12 6 1.9132 -3.3537 1.1492 13 1 2.7039 -4.0741 1.0004 14 6 1.3334 -3.2134 2.3922 15 7 0.2923 -2.4249 2.5470 16 14 2.0264 -4.1435 3.8565 17 1 3.1903 -4.9565 3.4207 18 1 2.4603 -3.1767 4.8968 19 1 0.9801 -5.0365 4.4160 20 6 1.6999 -3.2371 -1.3186 21 6 0.5617 -3.2735 -2.3404 22 6 0.9318 -4.5378 -1.5622 23 1 -0.3633 -0.1113 -1.0216 24 1 -0.3634 -0.8292 0.6072 25 1 -0.3633 0.9404 0.4145 26 1 4.1218 2.1374 -0.0010 27 1 5.3565 0.0076 -0.0024 28 1 4.4631 -2.7177 0.8680 29 1 -0.1159 -2.3264 3.4215 30 1 2.7185 -3.1750 -1.7014 31 1 -0.3694 -2.7730 -2.0746 32 1 0.8315 -3.2350 -3.3958 33 1 1.4449 -5.3311 -2.1057 34 1 0.2439 -4.8693 -0.7844 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260036976.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:07 Heat of formation + Delta-G solvation = -51.959442 kcal Electronic energy + Delta-G solvation = -18848.263654 eV Core-core repulsion = 15854.121547 eV Total energy + Delta-G solvation = -2994.142107 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.24889 -39.25444 -36.46268 -35.73547 -33.16871 -31.86846 -29.63671 -27.15464 -26.01279 -23.75628 -21.58479 -21.34128 -20.71331 -19.13278 -17.31855 -16.74591 -16.41885 -15.66383 -15.06704 -14.79878 -14.50110 -14.28256 -13.44172 -13.17961 -12.81196 -12.61280 -12.38156 -12.19707 -11.78385 -11.35257 -11.20936 -11.07986 -10.89704 -10.72012 -10.56361 -10.47279 -9.95562 -9.82892 -9.41072 -9.08146 -8.77149 -8.46761 -7.81863 -7.53744 -6.16980 -4.18329 1.85369 2.02247 3.20606 3.30735 3.31799 4.20380 4.31874 4.80990 4.95205 5.12636 5.18182 5.46582 5.50521 5.69587 5.90434 5.93113 6.03090 6.15140 6.24153 6.33108 6.41468 6.54611 6.55694 6.72576 6.81879 6.90229 6.94995 7.02668 7.10463 7.20235 7.37036 7.59991 7.74934 7.89960 8.28748 8.55174 8.89949 9.44735 10.91583 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.016774 B = 0.010268 C = 0.008969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.850064 B = 2726.343906 C = 3120.971537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.102 4.102 3 C 0.072 3.928 4 F -0.151 7.151 5 C -0.167 4.167 6 C -0.139 4.139 7 C 0.106 3.894 8 O -0.490 6.490 9 C -0.018 4.018 10 C 0.094 3.906 11 H 0.073 0.927 12 C -0.501 4.501 13 H 0.065 0.935 14 C 0.066 3.934 15 N -0.883 5.883 16 Si 0.887 3.113 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.111 4.111 21 C -0.205 4.205 22 C -0.171 4.171 23 H 0.057 0.943 24 H 0.108 0.892 25 H 0.052 0.948 26 H 0.122 0.878 27 H 0.123 0.877 28 H 0.387 0.613 29 H 0.262 0.738 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.260 2.674 -4.246 5.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.103 4.103 3 C 0.053 3.947 4 F -0.130 7.130 5 C -0.186 4.186 6 C -0.157 4.157 7 C 0.061 3.939 8 O -0.300 6.300 9 C -0.019 4.019 10 C 0.076 3.924 11 H 0.090 0.910 12 C -0.539 4.539 13 H 0.083 0.917 14 C -0.137 4.137 15 N -0.520 5.520 16 Si 0.715 3.285 17 H -0.195 1.195 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.130 4.130 21 C -0.242 4.242 22 C -0.208 4.208 23 H 0.076 0.924 24 H 0.127 0.873 25 H 0.071 0.929 26 H 0.140 0.860 27 H 0.141 0.859 28 H 0.244 0.756 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.065 2.832 -4.708 6.291 hybrid contribution 0.379 -0.168 1.514 1.570 sum 3.444 2.664 -3.194 5.400 Atomic orbital electron populations 1.20832 0.90666 1.03970 1.01918 1.19717 0.97094 0.90830 1.02634 1.17583 0.89907 0.80805 1.06432 1.91387 1.80625 1.46570 1.94421 1.20608 0.92024 0.98557 1.07434 1.21090 0.99642 0.91597 1.03396 1.18234 0.89779 0.84904 1.00961 1.84678 1.75636 1.36089 1.33629 1.20866 0.92909 0.96442 0.91715 1.17681 0.97329 0.87058 0.90346 0.90959 1.20980 1.20170 1.19836 0.92913 0.91727 1.25024 0.94529 0.95175 0.99018 1.69852 1.20570 1.37865 1.23678 0.86609 0.79345 0.79716 0.82842 1.19527 1.21095 1.21010 1.22417 0.94861 0.99028 0.96645 1.22998 1.01075 1.03636 0.96504 1.22694 1.04628 0.91034 1.02451 0.92392 0.87337 0.92932 0.85962 0.85947 0.75633 0.92758 0.88926 0.89665 0.90618 0.90616 0.88809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 9.14 36.00 0.33 -2.04 16 2 C -0.10 -2.17 5.88 -104.58 -0.62 -2.78 16 3 C 0.07 1.43 7.24 -39.42 -0.29 1.14 16 4 F -0.15 -2.91 16.37 2.25 0.04 -2.87 16 5 C -0.17 -2.98 10.02 -39.53 -0.40 -3.38 16 6 C -0.14 -2.48 9.99 -39.44 -0.39 -2.88 16 7 C 0.11 2.15 6.20 -39.24 -0.24 1.91 16 8 O -0.49 -9.40 10.77 -19.60 -0.21 -9.62 16 9 C -0.02 -0.40 4.78 -104.48 -0.50 -0.89 16 10 C 0.09 2.14 1.81 -92.92 -0.17 1.97 16 11 H 0.07 1.79 4.68 -51.93 -0.24 1.54 16 12 C -0.50 -12.17 6.41 -34.44 -0.22 -12.39 16 13 H 0.06 1.56 7.23 -52.49 -0.38 1.18 16 14 C 0.07 1.65 5.45 -17.82 -0.10 1.55 16 15 N -0.88 -23.18 12.24 55.43 0.68 -22.50 16 16 Si 0.89 19.73 29.54 -169.99 -5.02 14.71 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 20 C -0.11 -2.29 4.74 -90.62 -0.43 -2.72 16 21 C -0.21 -3.73 10.18 -26.73 -0.27 -4.01 16 22 C -0.17 -3.24 10.00 -26.72 -0.27 -3.50 16 23 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 24 H 0.11 2.44 5.70 -51.93 -0.30 2.14 16 25 H 0.05 0.99 7.46 -51.93 -0.39 0.61 16 26 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 27 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 28 H 0.39 6.64 8.25 45.56 0.38 7.01 16 29 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 30 H 0.09 1.95 6.99 -51.93 -0.36 1.59 16 31 H 0.08 1.55 8.08 -51.93 -0.42 1.13 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 LS Contribution 287.48 15.07 4.33 4.33 Total: -1.00 -26.21 287.48 -7.13 -33.33 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -3.38 Total: 10.64 kcal Atomic # 6 Polarization: -24.47 SS G_CDS: -3.56 Total: -28.03 kcal Atomic # 7 Polarization: -23.18 SS G_CDS: 0.68 Total: -22.50 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -0.21 Total: -9.62 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.04 Total: -2.87 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -26.21 -7.13 -33.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260036976.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.624 kcal (2) G-P(sol) polarization free energy of solvation -26.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds