Wall clock time and date at job start Mon Mar 30 2020 06:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38474 * 119.98556 * 2 1 4 4 F 1.35098 * 119.96942 * 0.02562 * 3 2 1 5 5 C 1.38436 * 120.06195 * 180.02562 * 3 2 1 6 6 C 1.38175 * 120.02975 * 0.02562 * 5 3 2 7 7 C 1.38688 * 119.96689 * 0.22468 * 6 5 3 8 8 O 1.35955 * 120.02727 * 179.72964 * 7 6 5 9 9 C 1.38134 * 119.98537 * 180.02562 * 2 1 3 10 10 C 1.50700 * 120.01317 * 0.02562 * 9 2 1 11 11 H 1.09000 * 109.47274 * 354.12163 * 10 9 2 12 12 C 1.50703 * 109.47053 * 234.12470 * 10 9 2 13 13 H 1.07997 * 119.99960 * 266.83855 * 12 10 9 14 14 C 1.37875 * 119.99779 * 86.82780 * 12 10 9 15 15 N 1.31511 * 120.00053 * 6.11086 * 14 12 10 16 16 Si 1.86804 * 120.00024 * 186.10355 * 14 12 10 17 17 H 1.48508 * 109.46825 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47219 * 120.00105 * 16 14 12 19 19 H 1.48496 * 109.47392 * 240.00862 * 16 14 12 20 20 C 1.53000 * 109.46919 * 114.12628 * 10 9 2 21 21 C 1.53002 * 117.49726 * 253.38147 * 20 10 9 22 22 C 1.53005 * 60.00135 * 252.51387 * 21 20 10 23 23 H 1.09000 * 109.47110 * 96.21708 * 1 2 3 24 24 H 1.09006 * 109.47352 * 216.21434 * 1 2 3 25 25 H 1.09000 * 109.47039 * 336.21546 * 1 2 3 26 26 H 1.07997 * 119.98530 * 179.97438 * 5 3 2 27 27 H 1.08002 * 120.01507 * 179.97438 * 6 5 3 28 28 H 0.96698 * 113.99527 * 90.00352 * 8 7 6 29 29 H 0.97010 * 120.00015 * 179.97438 * 15 14 12 30 30 H 1.08995 * 115.55352 * 39.09870 * 20 10 9 31 31 H 1.08998 * 117.49800 * 0.02562 * 21 20 10 32 32 H 1.09001 * 117.49541 * 145.02310 * 21 20 10 33 33 H 1.08998 * 117.49782 * 252.50609 * 22 21 20 34 34 H 1.09002 * 117.49422 * 107.49340 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1990 1.1994 0.0000 4 9 1.5226 2.3688 0.0005 5 6 3.5833 1.2012 -0.0005 6 6 4.2764 0.0059 -0.0016 7 6 3.5845 -1.1961 -0.0069 8 8 4.2653 -2.3729 -0.0135 9 6 2.1973 -1.1964 -0.0005 10 6 1.4438 -2.5015 -0.0017 11 1 0.3767 -2.3051 0.1033 12 6 1.9132 -3.3537 1.1492 13 1 2.7039 -4.0741 1.0004 14 6 1.3334 -3.2134 2.3922 15 7 0.2923 -2.4249 2.5470 16 14 2.0264 -4.1435 3.8565 17 1 3.1903 -4.9565 3.4207 18 1 2.4603 -3.1767 4.8968 19 1 0.9801 -5.0365 4.4160 20 6 1.6999 -3.2371 -1.3186 21 6 0.5617 -3.2735 -2.3404 22 6 0.9318 -4.5378 -1.5622 23 1 -0.3633 -0.1113 -1.0216 24 1 -0.3634 -0.8292 0.6072 25 1 -0.3633 0.9404 0.4145 26 1 4.1218 2.1374 -0.0010 27 1 5.3565 0.0076 -0.0024 28 1 4.4631 -2.7177 0.8680 29 1 -0.1159 -2.3264 3.4215 30 1 2.7185 -3.1750 -1.7014 31 1 -0.3694 -2.7730 -2.0746 32 1 0.8315 -3.2350 -3.3958 33 1 1.4449 -5.3311 -2.1057 34 1 0.2439 -4.8693 -0.7844 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260036976.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:07 Heat of formation + Delta-G solvation = -65.123244 kcal Electronic energy + Delta-G solvation = -18848.834479 eV Core-core repulsion = 15854.121547 eV Total energy + Delta-G solvation = -2994.712932 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.76070 -40.79550 -38.02385 -37.24442 -34.91519 -33.50367 -31.27459 -28.78876 -27.59870 -25.53596 -23.10819 -22.86401 -22.22887 -20.77620 -18.93490 -18.38415 -17.94640 -17.31099 -16.65011 -16.50599 -16.03487 -15.82665 -15.04669 -14.64151 -14.48541 -14.10469 -13.96873 -13.81970 -13.43231 -13.04940 -12.86851 -12.81191 -12.52496 -12.21811 -12.19991 -12.07997 -11.64227 -11.39012 -11.02562 -10.83731 -10.40202 -10.28588 -9.37018 -9.07839 -8.06334 -6.12048 0.32257 0.52184 1.42425 1.48070 1.55676 2.45361 2.70418 3.21128 3.31169 3.48616 3.66130 3.98595 4.04162 4.19223 4.38030 4.40522 4.53464 4.60442 4.73333 4.83506 4.88910 4.99521 5.04134 5.24076 5.26104 5.35628 5.35834 5.47086 5.48480 5.62458 5.74226 5.84815 6.05386 6.15480 6.46114 7.00495 7.09258 7.52657 9.00804 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.016774 B = 0.010268 C = 0.008969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.850064 B = 2726.343906 C = 3120.971537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.123 4.123 3 C 0.059 3.941 4 F -0.150 7.150 5 C -0.156 4.156 6 C -0.130 4.130 7 C 0.094 3.906 8 O -0.492 6.492 9 C -0.043 4.043 10 C 0.098 3.902 11 H 0.045 0.955 12 C -0.497 4.497 13 H 0.063 0.937 14 C 0.021 3.979 15 N -0.911 5.911 16 Si 0.941 3.059 17 H -0.259 1.259 18 H -0.290 1.290 19 H -0.291 1.291 20 C -0.129 4.129 21 C -0.189 4.189 22 C -0.168 4.168 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.057 0.943 26 H 0.158 0.842 27 H 0.157 0.843 28 H 0.394 0.606 29 H 0.258 0.742 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.994 3.028 -4.953 7.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.125 4.125 3 C 0.040 3.960 4 F -0.129 7.129 5 C -0.174 4.174 6 C -0.148 4.148 7 C 0.049 3.951 8 O -0.304 6.304 9 C -0.044 4.044 10 C 0.079 3.921 11 H 0.063 0.937 12 C -0.535 4.535 13 H 0.081 0.919 14 C -0.179 4.179 15 N -0.550 5.550 16 Si 0.768 3.232 17 H -0.183 1.183 18 H -0.216 1.216 19 H -0.217 1.217 20 C -0.147 4.147 21 C -0.225 4.225 22 C -0.205 4.205 23 H 0.088 0.912 24 H 0.100 0.900 25 H 0.076 0.924 26 H 0.176 0.824 27 H 0.175 0.825 28 H 0.252 0.748 29 H 0.067 0.933 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.811 3.176 -5.423 7.915 hybrid contribution -0.141 -0.253 1.675 1.700 sum 4.670 2.923 -3.748 6.663 Atomic orbital electron populations 1.20714 0.90755 1.03013 1.02154 1.19877 0.97439 0.91546 1.03589 1.17754 0.90897 0.80396 1.06996 1.91387 1.80792 1.46238 1.94459 1.21008 0.91165 1.00099 1.05144 1.21411 1.01316 0.90485 1.01633 1.18434 0.89412 0.86035 1.01205 1.84649 1.75334 1.36103 1.34283 1.20837 0.93941 0.96053 0.93610 1.17509 0.95831 0.87815 0.90930 0.93654 1.21177 1.19386 1.19511 0.93432 0.91912 1.25633 0.94940 0.96145 1.01176 1.69990 1.21840 1.39552 1.23624 0.85760 0.78816 0.78484 0.80126 1.18258 1.21625 1.21745 1.22307 0.95384 1.00314 0.96706 1.23034 0.99769 1.02419 0.97323 1.22703 1.04014 0.91461 1.02312 0.91181 0.89992 0.92422 0.82443 0.82522 0.74814 0.93316 0.89250 0.90197 0.88071 0.88336 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.52 9.14 71.23 0.65 -3.87 16 2 C -0.12 -5.24 5.88 -19.84 -0.12 -5.36 16 3 C 0.06 2.24 7.24 22.37 0.16 2.40 16 4 F -0.15 -5.55 16.37 44.97 0.74 -4.81 16 5 C -0.16 -5.06 10.02 22.30 0.22 -4.83 16 6 C -0.13 -4.26 9.99 22.36 0.22 -4.03 16 7 C 0.09 3.67 6.20 22.49 0.14 3.81 16 8 O -0.49 -18.17 10.77 -93.04 -1.00 -19.17 16 9 C -0.04 -1.88 4.78 -19.77 -0.09 -1.98 16 10 C 0.10 4.49 1.81 -12.28 -0.02 4.46 16 11 H 0.05 2.32 4.68 -2.39 -0.01 2.31 16 12 C -0.50 -24.29 6.41 25.60 0.16 -24.12 16 13 H 0.06 3.02 7.23 -2.91 -0.02 3.00 16 14 C 0.02 1.05 5.45 84.65 0.46 1.51 16 15 N -0.91 -49.19 12.24 21.45 0.26 -48.93 16 16 Si 0.94 40.78 29.54 68.60 2.03 42.80 16 17 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 18 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 20 C -0.13 -5.25 4.74 -10.79 -0.05 -5.30 16 21 C -0.19 -6.65 10.18 30.60 0.31 -6.34 16 22 C -0.17 -6.22 10.00 30.60 0.31 -5.91 16 23 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 24 H 0.08 3.84 5.70 -2.38 -0.01 3.83 16 25 H 0.06 2.22 7.46 -2.39 -0.02 2.20 16 26 H 0.16 3.98 8.06 -2.91 -0.02 3.96 16 27 H 0.16 4.02 8.06 -2.91 -0.02 4.00 16 28 H 0.39 13.01 8.25 -74.06 -0.61 12.40 16 29 H 0.26 13.55 8.31 -92.70 -0.77 12.78 16 30 H 0.09 3.68 6.99 -2.39 -0.02 3.67 16 31 H 0.08 2.89 8.08 -2.39 -0.02 2.87 16 32 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 33 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 34 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -55.75 287.48 4.90 -50.86 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: 0.52 Total: 28.81 kcal Atomic # 6 Polarization: -51.92 SS G_CDS: 2.36 Total: -49.56 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: 0.26 Total: -48.93 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -1.00 Total: -19.17 kcal Atomic # 9 Polarization: -5.55 SS G_CDS: 0.74 Total: -4.81 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.80 kcal Total: -55.75 4.90 -50.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260036976.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.267 kcal (2) G-P(sol) polarization free energy of solvation -55.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds