Wall clock time and date at job start Mon Mar 30 2020 06:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36004 * 116.99787 * 2 1 4 4 C 1.38031 * 119.98817 * 359.97438 * 3 2 1 5 5 C 1.40037 * 119.82332 * 179.97438 * 4 3 2 6 6 C 1.46858 * 120.10016 * 179.97438 * 5 4 3 7 7 O 1.21298 * 119.99437 * 359.97438 * 6 5 4 8 8 C 1.40012 * 119.80670 * 359.97438 * 5 4 3 9 9 C 1.50697 * 120.01258 * 180.02562 * 8 5 4 10 10 C 1.52998 * 109.47225 * 85.00178 * 9 8 5 11 11 C 1.50709 * 109.46913 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99772 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99735 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00236 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99816 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46992 * 60.00264 * 15 13 11 17 17 H 1.48497 * 109.47291 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47067 * 300.00078 * 15 13 11 19 19 C 1.37673 * 119.97435 * 0.02562 * 8 5 4 20 20 C 1.38918 * 120.17786 * 359.74504 * 19 8 5 21 21 O 1.35756 * 119.90286 * 180.27442 * 20 19 8 22 22 H 1.09002 * 109.47382 * 60.00075 * 1 2 3 23 23 H 1.09001 * 109.46938 * 300.00061 * 1 2 3 24 24 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 25 25 H 1.08000 * 120.08992 * 359.95938 * 4 3 2 26 26 H 1.07998 * 120.00143 * 179.97438 * 6 5 4 27 27 H 1.09006 * 109.47206 * 204.99658 * 9 8 5 28 28 H 1.08992 * 109.47013 * 324.99525 * 9 8 5 29 29 H 1.08999 * 109.46875 * 299.99571 * 10 9 8 30 30 H 1.08996 * 109.47185 * 59.99855 * 10 9 8 31 31 H 0.96997 * 119.99937 * 179.97438 * 14 13 11 32 32 H 1.08006 * 119.91139 * 179.97438 * 19 8 5 33 33 H 0.96693 * 113.99843 * 270.22929 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2944 2.3693 -0.0005 5 6 1.9337 3.6152 0.0000 6 6 1.1395 4.8505 -0.0011 7 8 -0.0721 4.7925 -0.0030 8 6 3.3323 3.6798 0.0016 9 6 4.0251 5.0181 0.0028 10 6 4.1463 5.5284 1.4401 11 6 4.8385 6.8671 1.4411 12 1 5.1602 7.3093 0.5098 13 6 5.0611 7.5271 2.6310 14 7 4.6698 6.9882 3.7651 15 14 5.9198 9.1860 2.6324 16 1 5.1301 10.1528 1.8282 17 1 6.0374 9.6814 4.0273 18 1 7.2752 9.0423 2.0428 19 6 4.0744 2.5202 0.0022 20 6 3.4393 1.2847 0.0064 21 8 4.1766 0.1448 0.0126 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.2158 2.3142 -0.0016 26 1 1.6342 5.8105 -0.0003 27 1 5.0198 4.9127 -0.4303 28 1 3.4453 5.7278 -0.5871 29 1 3.1516 5.6338 1.8732 30 1 4.7261 4.8186 2.0300 31 1 4.8268 7.4524 4.6022 32 1 5.1533 2.5712 0.0030 33 1 4.3946 -0.1873 -0.8690 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260047657.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:42 Heat of formation + Delta-G solvation = -101.819258 kcal Electronic energy + Delta-G solvation = -17746.594639 eV Core-core repulsion = 14737.917658 eV Total energy + Delta-G solvation = -3008.676980 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.49970 -38.73242 -37.81092 -36.61631 -33.77942 -31.87824 -30.32620 -28.95767 -27.45494 -25.18516 -24.07844 -22.05961 -21.11094 -20.26257 -18.39407 -17.61495 -16.70142 -16.38554 -15.83962 -15.41308 -14.93646 -14.68825 -14.51595 -14.09492 -13.90718 -13.80059 -12.90522 -12.79208 -12.26973 -12.15959 -11.88535 -11.60571 -11.41120 -10.96279 -10.93302 -10.58310 -10.48603 -10.04541 -9.64333 -9.47100 -9.18420 -8.74455 -8.41571 -7.87207 -6.05964 -4.10527 0.69571 1.49707 2.59048 3.21158 3.30288 3.35707 3.37056 3.82212 4.16590 4.41034 4.53126 4.90476 4.99687 5.08340 5.20188 5.29816 5.30558 5.40210 5.59157 5.64149 5.79257 6.06109 6.23634 6.29709 6.44211 6.61626 6.69773 6.89184 7.18987 7.56267 7.64231 7.68462 7.73931 7.91411 8.29795 8.95999 9.54600 11.04746 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.028625 B = 0.005308 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.924226 B = 5273.614398 C = 5844.482868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.311 6.311 3 C 0.068 3.932 4 C -0.134 4.134 5 C -0.167 4.167 6 C 0.387 3.613 7 O -0.475 6.475 8 C -0.020 4.020 9 C -0.087 4.087 10 C 0.028 3.972 11 C -0.527 4.527 12 H 0.058 0.942 13 C 0.060 3.940 14 N -0.892 5.892 15 Si 0.893 3.107 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.125 4.125 20 C 0.112 3.888 21 O -0.486 6.486 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.098 0.902 25 H 0.139 0.861 26 H 0.119 0.881 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.018 0.982 30 H 0.021 0.979 31 H 0.263 0.737 32 H 0.143 0.857 33 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.762 -11.405 -9.890 15.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.225 6.225 3 C 0.022 3.978 4 C -0.153 4.153 5 C -0.168 4.168 6 C 0.248 3.752 7 O -0.349 6.349 8 C -0.021 4.021 9 C -0.125 4.125 10 C -0.009 4.009 11 C -0.565 4.565 12 H 0.076 0.924 13 C -0.142 4.142 14 N -0.531 5.531 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.143 4.143 20 C 0.066 3.934 21 O -0.295 6.295 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.117 0.883 25 H 0.156 0.844 26 H 0.136 0.864 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.037 0.963 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.161 0.839 33 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -5.372 -11.546 -9.079 15.639 hybrid contribution 0.413 0.849 -0.250 0.977 sum -4.959 -10.697 -9.328 15.034 Atomic orbital electron populations 1.23060 0.78728 1.03696 1.01510 1.86112 1.20979 1.26074 1.89355 1.19215 0.91651 0.84784 1.02105 1.21326 1.00383 0.90973 1.02599 1.20600 0.94374 0.95175 1.06663 1.24266 0.88426 0.93614 0.68939 1.90452 1.17653 1.90978 1.35839 1.20448 0.91916 0.96853 0.92877 1.20994 0.99056 0.90007 1.02409 1.19137 0.97608 0.95911 0.88228 1.21163 1.38663 1.03815 0.92906 0.92413 1.25018 0.95676 0.97924 0.95622 1.69954 1.46638 1.38684 0.97778 0.86642 0.80152 0.84083 0.77041 1.20154 1.21295 1.20193 1.21189 1.01028 0.89985 1.02120 1.18034 0.86013 0.86500 1.02817 1.84817 1.72112 1.39429 1.33159 0.92757 0.92583 0.88322 0.84378 0.86448 0.91181 0.91422 0.96343 0.96066 0.92782 0.83945 0.75787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.31 10.28 -34.42 -0.35 -4.66 16 3 C 0.07 1.03 6.69 -39.19 -0.26 0.76 16 4 C -0.13 -2.07 8.58 -38.98 -0.33 -2.40 16 5 C -0.17 -2.78 5.87 -105.07 -0.62 -3.39 16 6 C 0.39 6.53 10.69 34.22 0.37 6.89 16 7 O -0.47 -8.84 17.16 5.54 0.10 -8.75 16 8 C -0.02 -0.34 5.17 -104.17 -0.54 -0.88 16 9 C -0.09 -1.60 4.65 -27.88 -0.13 -1.73 16 10 C 0.03 0.68 4.96 -27.88 -0.14 0.54 16 11 C -0.53 -14.00 9.11 -34.44 -0.31 -14.31 16 12 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 15 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 C -0.12 -1.94 9.59 -39.54 -0.38 -2.32 16 20 C 0.11 1.69 6.73 -38.87 -0.26 1.43 16 21 O -0.49 -6.51 13.26 -33.65 -0.45 -6.96 16 22 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 23 H 0.06 0.56 7.66 -51.93 -0.40 0.16 16 24 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.14 1.97 5.86 -52.49 -0.31 1.67 16 26 H 0.12 1.87 6.46 -52.49 -0.34 1.54 16 27 H 0.07 1.21 8.05 -51.93 -0.42 0.80 16 28 H 0.07 1.14 6.60 -51.93 -0.34 0.80 16 29 H 0.02 0.47 7.96 -51.93 -0.41 0.05 16 30 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.14 2.02 8.06 -52.48 -0.42 1.60 16 33 H 0.39 3.14 9.06 45.56 0.41 3.55 16 LS Contribution 291.85 15.07 4.40 4.40 Total: -1.00 -32.29 291.85 -5.32 -37.60 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -3.01 Total: 0.50 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -1.71 Total: -12.62 kcal Atomic # 7 Polarization: -26.14 SS G_CDS: 0.74 Total: -25.40 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.70 Total: -20.37 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.29 -5.32 -37.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260047657.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.216 kcal (2) G-P(sol) polarization free energy of solvation -32.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds