Wall clock time and date at job start Mon Mar 30 2020 06:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36004 * 116.99787 * 2 1 4 4 C 1.38031 * 119.98817 * 359.97438 * 3 2 1 5 5 C 1.40037 * 119.82332 * 179.97438 * 4 3 2 6 6 C 1.46858 * 120.10016 * 179.97438 * 5 4 3 7 7 O 1.21298 * 119.99437 * 359.97438 * 6 5 4 8 8 C 1.40012 * 119.80670 * 359.97438 * 5 4 3 9 9 C 1.50697 * 120.01258 * 180.02562 * 8 5 4 10 10 C 1.52998 * 109.47225 * 85.00178 * 9 8 5 11 11 C 1.50709 * 109.46913 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99772 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99735 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00236 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99816 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46992 * 60.00264 * 15 13 11 17 17 H 1.48497 * 109.47291 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47067 * 300.00078 * 15 13 11 19 19 C 1.37673 * 119.97435 * 0.02562 * 8 5 4 20 20 C 1.38918 * 120.17786 * 359.74504 * 19 8 5 21 21 O 1.35756 * 119.90286 * 180.27442 * 20 19 8 22 22 H 1.09002 * 109.47382 * 60.00075 * 1 2 3 23 23 H 1.09001 * 109.46938 * 300.00061 * 1 2 3 24 24 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 25 25 H 1.08000 * 120.08992 * 359.95938 * 4 3 2 26 26 H 1.07998 * 120.00143 * 179.97438 * 6 5 4 27 27 H 1.09006 * 109.47206 * 204.99658 * 9 8 5 28 28 H 1.08992 * 109.47013 * 324.99525 * 9 8 5 29 29 H 1.08999 * 109.46875 * 299.99571 * 10 9 8 30 30 H 1.08996 * 109.47185 * 59.99855 * 10 9 8 31 31 H 0.96997 * 119.99937 * 179.97438 * 14 13 11 32 32 H 1.08006 * 119.91139 * 179.97438 * 19 8 5 33 33 H 0.96693 * 113.99843 * 270.22929 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2944 2.3693 -0.0005 5 6 1.9337 3.6152 0.0000 6 6 1.1395 4.8505 -0.0011 7 8 -0.0721 4.7925 -0.0030 8 6 3.3323 3.6798 0.0016 9 6 4.0251 5.0181 0.0028 10 6 4.1463 5.5284 1.4401 11 6 4.8385 6.8671 1.4411 12 1 5.1602 7.3093 0.5098 13 6 5.0611 7.5271 2.6310 14 7 4.6698 6.9882 3.7651 15 14 5.9198 9.1860 2.6324 16 1 5.1301 10.1528 1.8282 17 1 6.0374 9.6814 4.0273 18 1 7.2752 9.0423 2.0428 19 6 4.0744 2.5202 0.0022 20 6 3.4393 1.2847 0.0064 21 8 4.1766 0.1448 0.0126 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.2158 2.3142 -0.0016 26 1 1.6342 5.8105 -0.0003 27 1 5.0198 4.9127 -0.4303 28 1 3.4453 5.7278 -0.5871 29 1 3.1516 5.6338 1.8732 30 1 4.7261 4.8186 2.0300 31 1 4.8268 7.4524 4.6022 32 1 5.1533 2.5712 0.0030 33 1 4.3946 -0.1873 -0.8690 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260047657.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:42 Heat of formation + Delta-G solvation = -123.398953 kcal Electronic energy + Delta-G solvation = -17747.530404 eV Core-core repulsion = 14737.917658 eV Total energy + Delta-G solvation = -3009.612746 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.67563 -40.01856 -38.91329 -37.86412 -35.56689 -33.57042 -31.54505 -30.43577 -28.49670 -26.85228 -25.38451 -23.61210 -22.45773 -21.63036 -19.52121 -18.81231 -18.40084 -17.90794 -16.88557 -16.61280 -16.48613 -16.03612 -15.93924 -15.37074 -15.20881 -14.92550 -14.55495 -14.37369 -13.77773 -13.56543 -13.21629 -12.85134 -12.74192 -12.55192 -12.49933 -12.08473 -11.78903 -11.67652 -11.39693 -11.16024 -10.78470 -10.50534 -9.95518 -9.10241 -8.15080 -6.26415 -0.55309 0.27139 1.31531 1.45847 1.47620 1.55228 2.21369 2.44860 2.60279 3.06911 3.19254 3.27233 3.72351 3.91173 4.03959 4.22668 4.32550 4.41274 4.45852 4.56201 4.68555 4.75037 4.86364 4.98391 5.05075 5.17302 5.30455 5.53244 5.57967 5.76339 5.88548 6.17693 6.25675 6.34336 6.81287 6.91461 7.43614 8.95960 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.028625 B = 0.005308 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.924226 B = 5273.614398 C = 5844.482868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.320 6.320 3 C 0.068 3.932 4 C -0.136 4.136 5 C -0.179 4.179 6 C 0.392 3.608 7 O -0.496 6.496 8 C -0.031 4.031 9 C -0.074 4.074 10 C 0.033 3.967 11 C -0.538 4.538 12 H 0.070 0.930 13 C 0.001 3.999 14 N -0.935 5.935 15 Si 0.961 3.039 16 H -0.265 1.265 17 H -0.290 1.290 18 H -0.266 1.266 19 C -0.128 4.128 20 C 0.116 3.884 21 O -0.493 6.493 22 H 0.064 0.936 23 H 0.054 0.946 24 H 0.128 0.872 25 H 0.148 0.852 26 H 0.126 0.874 27 H 0.082 0.918 28 H 0.082 0.918 29 H -0.005 1.005 30 H -0.009 1.009 31 H 0.262 0.738 32 H 0.154 0.846 33 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.445 -11.825 -11.173 16.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.234 6.234 3 C 0.022 3.978 4 C -0.155 4.155 5 C -0.180 4.180 6 C 0.254 3.746 7 O -0.372 6.372 8 C -0.032 4.032 9 C -0.111 4.111 10 C -0.004 4.004 11 C -0.576 4.576 12 H 0.088 0.912 13 C -0.197 4.197 14 N -0.575 5.575 15 Si 0.786 3.214 16 H -0.190 1.190 17 H -0.216 1.216 18 H -0.191 1.191 19 C -0.146 4.146 20 C 0.070 3.930 21 O -0.306 6.306 22 H 0.083 0.917 23 H 0.072 0.928 24 H 0.146 0.854 25 H 0.165 0.835 26 H 0.142 0.858 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.013 0.987 30 H 0.009 0.991 31 H 0.070 0.930 32 H 0.172 0.828 33 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -5.047 -11.981 -10.404 16.651 hybrid contribution 0.287 0.819 0.133 0.878 sum -4.760 -11.162 -10.271 15.898 Atomic orbital electron populations 1.23370 0.76708 1.05822 1.01920 1.86106 1.23049 1.25264 1.89028 1.19323 0.91909 0.85212 1.01335 1.21432 1.00951 0.90722 1.02398 1.20612 0.94375 0.95483 1.07563 1.24396 0.88098 0.94166 0.67981 1.90439 1.18412 1.91230 1.37151 1.20274 0.92006 0.96483 0.94402 1.20743 1.00397 0.91217 0.98745 1.18982 0.95351 0.94668 0.91406 1.21684 1.37940 1.04704 0.93312 0.91152 1.25939 0.96559 1.01857 0.95338 1.70104 1.48479 1.40503 0.98439 0.85558 0.79395 0.79534 0.76916 1.19006 1.21607 1.19085 1.21318 1.01627 0.89856 1.01789 1.18065 0.86263 0.86826 1.01827 1.84751 1.71763 1.38668 1.35388 0.91732 0.92764 0.85434 0.83483 0.85794 0.89961 0.89923 0.98704 0.99104 0.92971 0.82805 0.72943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.32 -8.23 10.28 -79.57 -0.82 -9.05 16 3 C 0.07 1.96 6.69 22.52 0.15 2.11 16 4 C -0.14 -4.08 8.58 22.66 0.19 -3.89 16 5 C -0.18 -5.87 5.87 -20.16 -0.12 -5.99 16 6 C 0.39 13.17 10.69 70.08 0.75 13.92 16 7 O -0.50 -18.45 17.16 -3.09 -0.05 -18.50 16 8 C -0.03 -1.02 5.17 -19.57 -0.10 -1.12 16 9 C -0.07 -2.66 4.65 29.85 0.14 -2.52 16 10 C 0.03 1.61 4.96 29.85 0.15 1.76 16 11 C -0.54 -28.50 9.11 25.60 0.23 -28.27 16 12 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 13 C 0.00 0.05 5.46 84.65 0.46 0.51 16 14 N -0.93 -55.86 13.29 21.45 0.28 -55.57 16 15 Si 0.96 42.69 29.54 68.60 2.03 44.72 16 16 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 17 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 18 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 19 C -0.13 -3.81 9.59 22.30 0.21 -3.60 16 20 C 0.12 3.32 6.73 22.73 0.15 3.47 16 21 O -0.49 -12.14 13.26 -76.80 -1.02 -13.16 16 22 H 0.06 1.02 7.66 -2.39 -0.02 1.01 16 23 H 0.05 0.99 7.66 -2.39 -0.02 0.97 16 24 H 0.13 1.50 8.14 -2.38 -0.02 1.48 16 25 H 0.15 4.06 5.86 -2.91 -0.02 4.04 16 26 H 0.13 3.96 6.46 -2.91 -0.02 3.94 16 27 H 0.08 2.73 8.05 -2.38 -0.02 2.71 16 28 H 0.08 2.69 6.60 -2.39 -0.02 2.67 16 29 H -0.01 -0.29 7.96 -2.39 -0.02 -0.31 16 30 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 31 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 32 H 0.15 4.15 8.06 -2.91 -0.02 4.13 16 33 H 0.41 5.60 9.06 -74.06 -0.67 4.93 16 Total: -1.00 -68.75 291.85 4.23 -64.52 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 0.47 Total: 9.25 kcal Atomic # 6 Polarization: -25.55 SS G_CDS: 3.34 Total: -22.22 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.28 Total: -55.57 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -1.89 Total: -40.70 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -68.75 4.23 -64.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260047657.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.877 kcal (2) G-P(sol) polarization free energy of solvation -68.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds