Wall clock time and date at job start Mon Mar 30 2020 06:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38267 * 119.95510 * 2 1 4 4 C 1.38257 * 120.12677 * 179.97438 * 3 2 1 5 5 C 1.38326 * 120.03158 * 359.97438 * 4 3 2 6 6 F 1.35102 * 120.04947 * 179.97438 * 5 4 3 7 7 C 1.38910 * 119.90576 * 0.24646 * 5 4 3 8 8 O 1.35957 * 120.06608 * 179.74634 * 7 5 4 9 9 C 1.38183 * 119.95323 * 179.97438 * 2 1 3 10 10 C 1.50698 * 120.01116 * 359.97438 * 9 2 1 11 11 H 1.08992 * 109.47632 * 5.67939 * 10 9 2 12 12 C 1.50703 * 109.46807 * 125.67672 * 10 9 2 13 13 H 1.08000 * 120.00151 * 0.02562 * 12 10 9 14 14 C 1.37884 * 120.00185 * 179.97438 * 12 10 9 15 15 N 1.31515 * 119.99668 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 120.00110 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47394 * 60.00027 * 16 14 12 18 18 H 1.48506 * 109.47072 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47298 * 299.99954 * 16 14 12 20 20 C 1.52999 * 109.47361 * 245.67392 * 10 9 2 21 21 C 1.53001 * 117.50139 * 128.62509 * 20 10 9 22 22 C 1.52999 * 117.49703 * 60.00283 * 20 10 9 23 23 H 1.08998 * 109.47478 * 96.13745 * 1 2 3 24 24 H 1.08998 * 109.47086 * 216.14045 * 1 2 3 25 25 H 1.09004 * 109.46874 * 336.13472 * 1 2 3 26 26 H 1.07998 * 119.93252 * 359.97438 * 3 2 1 27 27 H 1.08000 * 119.98044 * 179.97438 * 4 3 2 28 28 H 0.96703 * 113.99707 * 90.00141 * 8 7 5 29 29 H 0.97002 * 120.00035 * 180.02562 * 15 14 12 30 30 H 1.09001 * 115.55101 * 274.33495 * 20 10 9 31 31 H 1.08999 * 117.49266 * 359.97438 * 21 20 10 32 32 H 1.08997 * 117.50170 * 145.02231 * 21 20 10 33 33 H 1.08997 * 117.49861 * 214.98202 * 22 20 10 34 34 H 1.08994 * 117.49644 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1980 0.0000 4 6 3.5799 1.2021 0.0005 5 6 4.2758 0.0066 0.0016 6 9 5.6268 0.0103 0.0016 7 6 3.5835 -1.1977 -0.0030 8 8 4.2642 -2.3746 -0.0072 9 6 2.1969 -1.1973 0.0005 10 6 1.4426 -2.5019 0.0017 11 1 0.3755 -2.3047 -0.0997 12 6 1.9081 -3.3523 -1.1521 13 1 2.6739 -2.9849 -1.8192 14 6 1.3572 -4.5998 -1.3555 15 7 0.4250 -5.0473 -0.5429 16 14 1.9337 -5.6535 -2.7861 17 1 3.3879 -5.9216 -2.6490 18 1 1.1905 -6.9392 -2.7849 19 1 1.6806 -4.9372 -4.0621 20 6 1.7022 -3.2400 1.3165 21 6 0.4853 -3.7303 2.1037 22 6 1.2960 -2.5371 2.6133 23 1 -0.3634 -0.1099 -1.0217 24 1 -0.3633 -0.8299 0.6061 25 1 -0.3633 0.9398 0.4158 26 1 1.6555 2.1322 -0.0004 27 1 4.1168 2.1392 0.0001 28 1 4.4609 -2.7183 0.8750 29 1 0.0376 -5.9251 -0.6857 30 1 2.5993 -3.8587 1.3391 31 1 -0.5002 -3.5267 1.6850 32 1 0.5815 -4.6719 2.6442 33 1 1.9256 -2.6936 3.4892 34 1 0.8443 -1.5487 2.5298 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260053718.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:09 Heat of formation + Delta-G solvation = -61.731065 kcal Electronic energy + Delta-G solvation = -18854.952478 eV Core-core repulsion = 15860.386642 eV Total energy + Delta-G solvation = -2994.565836 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.77723 -40.91342 -37.93641 -37.66850 -34.62034 -33.32393 -31.69408 -28.99079 -27.29639 -25.41057 -23.21388 -22.83901 -22.21534 -20.86340 -18.91116 -18.63263 -17.96046 -17.25011 -16.66738 -16.48601 -15.89537 -15.72641 -15.01614 -14.89484 -14.60712 -14.42218 -14.11246 -13.61363 -13.42217 -12.94540 -12.85816 -12.69758 -12.41052 -12.33319 -12.14127 -11.90251 -11.65238 -11.60266 -11.20897 -10.60049 -10.46120 -10.12421 -9.37049 -9.24326 -7.99204 -6.05403 0.25290 0.42565 1.40985 1.42519 1.49735 2.47791 2.68559 3.23910 3.27148 3.39853 3.58775 3.97922 4.09014 4.26130 4.37712 4.42896 4.52491 4.65521 4.75733 4.87622 4.94030 5.01035 5.11348 5.19965 5.26579 5.32354 5.38132 5.52073 5.53154 5.61838 5.71518 5.88487 5.99510 6.10732 6.45160 6.95571 6.97639 7.57077 9.04601 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.019640 B = 0.009474 C = 0.008095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.326990 B = 2954.633913 C = 3458.017204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.099 4.099 3 C -0.094 4.094 4 C -0.149 4.149 5 C 0.036 3.964 6 F -0.150 7.150 7 C 0.069 3.931 8 O -0.487 6.487 9 C -0.058 4.058 10 C 0.114 3.886 11 H 0.030 0.970 12 C -0.502 4.502 13 H 0.036 0.964 14 C 0.027 3.973 15 N -0.895 5.895 16 Si 0.934 3.066 17 H -0.283 1.283 18 H -0.284 1.284 19 H -0.280 1.280 20 C -0.101 4.101 21 C -0.139 4.139 22 C -0.193 4.193 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.095 0.905 26 H 0.168 0.832 27 H 0.162 0.838 28 H 0.387 0.613 29 H 0.256 0.744 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.320 11.072 5.039 12.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.100 4.100 3 C -0.112 4.112 4 C -0.168 4.168 5 C 0.016 3.984 6 F -0.129 7.129 7 C 0.024 3.976 8 O -0.296 6.296 9 C -0.059 4.059 10 C 0.096 3.904 11 H 0.047 0.953 12 C -0.540 4.540 13 H 0.054 0.946 14 C -0.173 4.173 15 N -0.534 5.534 16 Si 0.762 3.238 17 H -0.209 1.209 18 H -0.210 1.210 19 H -0.206 1.206 20 C -0.120 4.120 21 C -0.177 4.177 22 C -0.230 4.230 23 H 0.083 0.917 24 H 0.076 0.924 25 H 0.113 0.887 26 H 0.186 0.814 27 H 0.179 0.821 28 H 0.243 0.757 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.219 10.956 4.457 11.891 hybrid contribution 0.779 -1.436 -0.458 1.697 sum 1.998 9.520 3.999 10.518 Atomic orbital electron populations 1.20797 0.89857 1.03339 1.02401 1.20107 0.97511 0.92008 1.00349 1.21180 0.92723 0.98309 0.98966 1.21206 0.95244 0.96315 1.04037 1.18428 0.76673 0.95007 1.08256 1.91405 1.29499 1.97483 1.94475 1.18477 0.90406 0.84484 1.04269 1.84929 1.75592 1.35873 1.33252 1.20608 0.92330 0.97191 0.95732 1.17298 0.94118 0.87164 0.91798 0.95254 1.21087 1.20331 1.01092 1.11536 0.94560 1.25409 0.95469 0.98596 0.97869 1.70085 1.27114 1.18636 1.37550 0.86006 0.78079 0.78561 0.81180 1.20923 1.20961 1.20584 1.21970 0.97676 1.01113 0.91197 1.22330 0.96161 0.96222 1.02957 1.23103 1.04976 0.96752 0.98208 0.91656 0.92386 0.88655 0.81440 0.82069 0.75678 0.93490 0.91650 0.91055 0.91040 0.88880 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.12 9.13 71.23 0.65 -2.47 16 2 C -0.10 -3.30 5.88 -19.87 -0.12 -3.41 16 3 C -0.09 -2.48 9.67 22.28 0.22 -2.27 16 4 C -0.15 -4.17 10.02 22.30 0.22 -3.95 16 5 C 0.04 1.27 7.31 22.45 0.16 1.44 16 6 F -0.15 -5.38 17.11 44.97 0.77 -4.61 16 7 C 0.07 2.81 6.16 22.53 0.14 2.95 16 8 O -0.49 -20.82 10.79 -93.07 -1.00 -21.82 16 9 C -0.06 -2.36 4.41 -19.78 -0.09 -2.45 16 10 C 0.11 5.37 1.73 -12.29 -0.02 5.35 16 11 H 0.03 1.47 5.48 -2.39 -0.01 1.46 16 12 C -0.50 -27.31 7.29 25.60 0.19 -27.13 16 13 H 0.04 2.10 7.10 -2.91 -0.02 2.08 16 14 C 0.03 1.45 5.30 84.66 0.45 1.90 16 15 N -0.90 -49.21 11.44 21.45 0.25 -48.97 16 16 Si 0.93 44.78 29.54 68.60 2.03 46.80 16 17 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 18 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 19 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 20 C -0.10 -4.41 3.53 -10.79 -0.04 -4.45 16 21 C -0.14 -5.79 9.05 30.59 0.28 -5.51 16 22 C -0.19 -6.90 9.87 30.59 0.30 -6.60 16 23 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.06 1.89 6.50 -2.39 -0.02 1.87 16 25 H 0.09 1.99 8.04 -2.38 -0.02 1.97 16 26 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 27 H 0.16 3.36 8.06 -2.91 -0.02 3.33 16 28 H 0.39 13.67 8.46 -74.06 -0.63 13.04 16 29 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 30 H 0.07 3.07 7.37 -2.39 -0.02 3.05 16 31 H 0.07 3.15 8.05 -2.39 -0.02 3.13 16 32 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 33 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 34 H 0.09 2.98 8.07 -2.39 -0.02 2.96 16 Total: -1.00 -61.76 287.46 4.87 -56.89 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.49 Total: 18.30 kcal Atomic # 6 Polarization: -48.94 SS G_CDS: 2.34 Total: -46.60 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.25 Total: -48.97 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -1.00 Total: -21.82 kcal Atomic # 9 Polarization: -5.38 SS G_CDS: 0.77 Total: -4.61 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -61.76 4.87 -56.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260053718.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.843 kcal (2) G-P(sol) polarization free energy of solvation -61.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds