Wall clock time and date at job start Mon Mar 30 2020 05:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81003 * 1 3 3 C 1.76202 * 99.99521 * 2 1 4 4 N 1.32565 * 119.22704 * 359.97438 * 3 2 1 5 5 C 1.32249 * 120.73314 * 179.68399 * 4 3 2 6 6 C 1.38642 * 119.19976 * 0.60621 * 5 4 3 7 7 C 1.50700 * 120.71102 * 179.70037 * 6 5 4 8 8 C 1.50702 * 109.46869 * 264.71951 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48501 * 109.47188 * 90.00793 * 12 10 8 14 14 H 1.48501 * 109.47085 * 210.00372 * 12 10 8 15 15 H 1.48498 * 109.47634 * 330.00608 * 12 10 8 16 16 C 1.38594 * 118.57229 * 359.42484 * 6 5 4 17 17 C 1.50699 * 120.40094 * 180.29614 * 16 6 5 18 18 C 1.52998 * 117.50032 * 188.75088 * 17 16 6 19 19 C 1.52995 * 117.50116 * 120.08693 * 17 16 6 20 20 N 1.32273 * 119.20188 * 0.27672 * 16 6 5 21 21 H 1.08997 * 109.47562 * 59.99961 * 1 2 3 22 22 H 1.09002 * 109.47147 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47024 * 299.99623 * 1 2 3 24 24 H 1.08006 * 120.39811 * 180.30836 * 5 4 3 25 25 H 1.09004 * 109.47210 * 144.72245 * 7 6 5 26 26 H 1.08994 * 109.47551 * 24.71897 * 7 6 5 27 27 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 28 28 H 1.09000 * 115.54772 * 334.41589 * 17 16 6 29 29 H 1.08998 * 117.49622 * 359.97438 * 18 17 16 30 30 H 1.09001 * 117.49760 * 145.02080 * 18 17 16 31 31 H 1.08995 * 117.49819 * 214.98251 * 19 17 16 32 32 H 1.08999 * 117.49876 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 1.0889 2.5735 -0.0005 5 6 1.2841 3.8815 0.0057 6 6 2.5809 4.3719 0.0001 7 6 2.8425 5.8560 0.0001 8 6 3.0519 6.3292 -1.4153 9 1 3.0002 5.6257 -2.2331 10 6 3.3032 7.6614 -1.6668 11 7 3.3658 8.5181 -0.6709 12 14 3.5551 8.2491 -3.4218 13 1 2.2470 8.6422 -4.0048 14 1 4.4701 9.4187 -3.4257 15 1 4.1483 7.1539 -4.2305 16 6 3.6314 3.4678 0.0002 17 6 5.0573 3.9556 0.0009 18 6 6.1599 2.9152 -0.2054 19 6 5.9455 3.5402 1.1754 20 7 3.3674 2.1717 0.0002 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.4434 4.5595 0.0103 25 1 3.7346 6.0677 0.5897 26 1 1.9884 6.3755 0.4343 27 1 3.5430 9.4553 -0.8478 28 1 5.2151 4.9471 -0.4234 29 1 5.8540 1.8779 -0.3412 30 1 7.0434 3.2224 -0.7651 31 1 6.6878 4.2583 1.5235 32 1 5.4984 2.9145 1.9478 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260083619.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:39 Heat of formation + Delta-G solvation = 55.587920 kcal Electronic energy + Delta-G solvation = -15726.738640 eV Core-core repulsion = 13199.932969 eV Total energy + Delta-G solvation = -2526.805670 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.49506 -36.79208 -34.04381 -32.80101 -31.88281 -28.93277 -27.62607 -24.88060 -24.24610 -22.00251 -21.45700 -20.73643 -17.93573 -16.81388 -16.47893 -15.43053 -14.88049 -14.67475 -14.52834 -13.84352 -13.35576 -13.29724 -13.15805 -12.62060 -12.38059 -11.82043 -11.33775 -11.30780 -11.20385 -10.88525 -10.75753 -10.69936 -10.39594 -10.07682 -9.98607 -9.61101 -9.49722 -8.81956 -8.79533 -8.51049 -7.37608 -6.17826 -4.23564 1.41724 1.53615 1.57287 2.33848 3.22563 3.29803 3.33718 3.98031 4.32103 4.46919 4.57219 4.88784 5.13035 5.16572 5.21678 5.27806 5.36692 5.48465 5.61624 5.76755 5.87196 5.96638 6.04714 6.17396 6.45302 6.50655 6.70828 6.90582 7.35297 7.44980 7.50128 7.76580 8.12043 8.39238 8.80904 9.41638 10.91169 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.023101 B = 0.006629 C = 0.005718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.754530 B = 4222.626625 C = 4895.705610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.031 6.031 3 C 0.265 3.735 4 N -0.529 5.529 5 C 0.142 3.858 6 C -0.126 4.126 7 C 0.059 3.941 8 C -0.517 4.517 9 H 0.055 0.945 10 C 0.064 3.936 11 N -0.889 5.889 12 Si 0.894 3.106 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.273 1.273 16 C 0.207 3.793 17 C -0.105 4.105 18 C -0.163 4.163 19 C -0.161 4.161 20 N -0.500 5.500 21 H 0.087 0.913 22 H 0.099 0.901 23 H 0.087 0.913 24 H 0.167 0.833 25 H 0.040 0.960 26 H 0.033 0.967 27 H 0.264 0.736 28 H 0.144 0.856 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.042 -11.691 2.542 12.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.201 5.799 3 C -0.111 4.111 4 N -0.246 5.246 5 C -0.025 4.025 6 C -0.132 4.132 7 C 0.021 3.979 8 C -0.555 4.555 9 H 0.074 0.926 10 C -0.139 4.139 11 N -0.527 5.527 12 Si 0.722 3.278 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.197 1.197 16 C 0.059 3.941 17 C -0.124 4.124 18 C -0.200 4.200 19 C -0.199 4.199 20 N -0.216 5.216 21 H 0.106 0.894 22 H 0.117 0.883 23 H 0.106 0.894 24 H 0.184 0.816 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.162 0.838 29 H 0.121 0.879 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.498 -13.490 2.579 13.743 hybrid contribution -0.713 2.549 -1.012 2.834 sum -1.211 -10.940 1.566 11.118 Atomic orbital electron populations 1.23435 0.94575 1.05532 1.07017 1.85426 1.06460 0.95530 1.92500 1.24358 0.87394 0.99533 0.99810 1.68560 1.34518 1.04796 1.16717 1.23080 0.96938 0.90348 0.92150 1.22176 0.93401 1.01670 0.95977 1.18268 0.98699 0.82738 0.98215 1.20955 1.49844 0.93279 0.91412 0.92632 1.24967 0.94975 0.96629 0.97282 1.69943 1.48557 1.03342 1.30875 0.86544 0.78248 0.78469 0.84564 1.20497 1.20991 1.19749 1.20619 0.95199 0.87190 0.91065 1.21092 0.85798 1.00960 1.04585 1.22926 0.99145 0.98953 0.98979 1.22904 1.02011 1.03350 0.91650 1.68015 1.21071 1.17055 1.15488 0.89394 0.88273 0.89441 0.81552 0.94188 0.94863 0.92612 0.83818 0.87920 0.88769 0.88362 0.89178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.62 101.05 0.97 -0.59 16 2 S -0.03 -0.45 22.90 -107.50 -2.46 -2.92 16 3 C 0.27 5.02 7.85 -90.84 -0.71 4.31 16 4 N -0.53 -10.01 9.14 -13.44 -0.12 -10.13 16 5 C 0.14 2.78 10.98 -17.22 -0.19 2.59 16 6 C -0.13 -2.69 5.10 -104.34 -0.53 -3.22 16 7 C 0.06 1.41 4.48 -29.03 -0.13 1.28 16 8 C -0.52 -13.55 8.67 -34.44 -0.30 -13.85 16 9 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 10 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 11 N -0.89 -24.74 13.29 55.43 0.74 -24.01 16 12 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 16 C 0.21 4.25 6.48 -82.27 -0.53 3.72 16 17 C -0.11 -1.96 5.23 -91.78 -0.48 -2.44 16 18 C -0.16 -2.54 10.04 -26.69 -0.27 -2.81 16 19 C -0.16 -2.49 10.24 -26.69 -0.27 -2.77 16 20 N -0.50 -9.97 9.45 -9.67 -0.09 -10.06 16 21 H 0.09 1.06 8.11 -51.92 -0.42 0.64 16 22 H 0.10 0.84 8.14 -51.92 -0.42 0.42 16 23 H 0.09 1.03 8.11 -51.92 -0.42 0.61 16 24 H 0.17 2.91 8.06 -52.48 -0.42 2.49 16 25 H 0.04 0.99 7.05 -51.93 -0.37 0.63 16 26 H 0.03 0.82 8.07 -51.93 -0.42 0.41 16 27 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.14 2.93 6.74 -51.93 -0.35 2.58 16 29 H 0.10 1.66 7.61 -51.93 -0.39 1.26 16 30 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 292.14 15.07 4.40 4.40 Total: -1.00 -28.57 292.14 -9.13 -37.69 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -4.03 Total: 1.53 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -2.54 Total: -12.17 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 0.52 Total: -44.20 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: -0.45 SS G_CDS: -2.46 Total: -2.92 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.57 -9.13 -37.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260083619.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.281 kcal (2) G-P(sol) polarization free energy of solvation -28.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds