Wall clock time and date at job start Mon Mar 30 2020 05:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81003 * 1 3 3 C 1.76202 * 99.99521 * 2 1 4 4 N 1.32565 * 119.22704 * 359.97438 * 3 2 1 5 5 C 1.32249 * 120.73314 * 179.68399 * 4 3 2 6 6 C 1.38642 * 119.19976 * 0.60621 * 5 4 3 7 7 C 1.50700 * 120.71102 * 179.70037 * 6 5 4 8 8 C 1.50702 * 109.46869 * 264.71951 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48501 * 109.47188 * 90.00793 * 12 10 8 14 14 H 1.48501 * 109.47085 * 210.00372 * 12 10 8 15 15 H 1.48498 * 109.47634 * 330.00608 * 12 10 8 16 16 C 1.38594 * 118.57229 * 359.42484 * 6 5 4 17 17 C 1.50699 * 120.40094 * 180.29614 * 16 6 5 18 18 C 1.52998 * 117.50032 * 188.75088 * 17 16 6 19 19 C 1.52995 * 117.50116 * 120.08693 * 17 16 6 20 20 N 1.32273 * 119.20188 * 0.27672 * 16 6 5 21 21 H 1.08997 * 109.47562 * 59.99961 * 1 2 3 22 22 H 1.09002 * 109.47147 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47024 * 299.99623 * 1 2 3 24 24 H 1.08006 * 120.39811 * 180.30836 * 5 4 3 25 25 H 1.09004 * 109.47210 * 144.72245 * 7 6 5 26 26 H 1.08994 * 109.47551 * 24.71897 * 7 6 5 27 27 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 28 28 H 1.09000 * 115.54772 * 334.41589 * 17 16 6 29 29 H 1.08998 * 117.49622 * 359.97438 * 18 17 16 30 30 H 1.09001 * 117.49760 * 145.02080 * 18 17 16 31 31 H 1.08995 * 117.49819 * 214.98251 * 19 17 16 32 32 H 1.08999 * 117.49876 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 1.0889 2.5735 -0.0005 5 6 1.2841 3.8815 0.0057 6 6 2.5809 4.3719 0.0001 7 6 2.8425 5.8560 0.0001 8 6 3.0519 6.3292 -1.4153 9 1 3.0002 5.6257 -2.2331 10 6 3.3032 7.6614 -1.6668 11 7 3.3658 8.5181 -0.6709 12 14 3.5551 8.2491 -3.4218 13 1 2.2470 8.6422 -4.0048 14 1 4.4701 9.4187 -3.4257 15 1 4.1483 7.1539 -4.2305 16 6 3.6314 3.4678 0.0002 17 6 5.0573 3.9556 0.0009 18 6 6.1599 2.9152 -0.2054 19 6 5.9455 3.5402 1.1754 20 7 3.3674 2.1717 0.0002 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.4434 4.5595 0.0103 25 1 3.7346 6.0677 0.5897 26 1 1.9884 6.3755 0.4343 27 1 3.5430 9.4553 -0.8478 28 1 5.2151 4.9471 -0.4234 29 1 5.8540 1.8779 -0.3412 30 1 7.0434 3.2224 -0.7651 31 1 6.6878 4.2583 1.5235 32 1 5.4984 2.9145 1.9478 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260083619.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:39 Heat of formation + Delta-G solvation = 40.666046 kcal Electronic energy + Delta-G solvation = -15727.385701 eV Core-core repulsion = 13199.932969 eV Total energy + Delta-G solvation = -2527.452732 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.083 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.00356 -38.15768 -35.89288 -34.29310 -33.70041 -30.01918 -29.31855 -26.35470 -26.04703 -23.34014 -23.12797 -22.17945 -19.33951 -18.55151 -18.26882 -16.84384 -16.58902 -16.17446 -15.89105 -15.13208 -15.00557 -14.60035 -14.46572 -14.18024 -13.71314 -13.46802 -13.14524 -12.87300 -12.61999 -12.46259 -12.41153 -12.22930 -11.81423 -11.75944 -11.41687 -11.23522 -11.14255 -10.64765 -10.32481 -10.23844 -8.69700 -8.20768 -6.34531 -0.13322 0.03547 0.25515 1.24676 1.39131 1.40852 1.50877 2.36824 2.55096 3.01108 3.09673 3.15164 3.45862 3.70021 3.96323 4.14849 4.16717 4.26282 4.35172 4.36605 4.41482 4.74751 4.86583 4.95742 5.00113 5.21812 5.27121 5.31661 5.41030 5.54594 5.69511 5.95727 6.11594 6.75053 6.86808 7.33927 8.86662 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.023101 B = 0.006629 C = 0.005718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.754530 B = 4222.626625 C = 4895.705610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.013 6.013 3 C 0.253 3.747 4 N -0.528 5.528 5 C 0.144 3.856 6 C -0.157 4.157 7 C 0.075 3.925 8 C -0.524 4.524 9 H 0.045 0.955 10 C 0.019 3.981 11 N -0.921 5.921 12 Si 0.955 3.045 13 H -0.274 1.274 14 H -0.278 1.278 15 H -0.271 1.271 16 C 0.206 3.794 17 C -0.138 4.138 18 C -0.143 4.143 19 C -0.142 4.142 20 N -0.511 5.511 21 H 0.083 0.917 22 H 0.137 0.863 23 H 0.086 0.914 24 H 0.182 0.818 25 H 0.022 0.978 26 H 0.015 0.985 27 H 0.267 0.733 28 H 0.119 0.881 29 H 0.099 0.901 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.068 -13.301 2.063 13.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.219 5.781 3 C -0.123 4.123 4 N -0.246 5.246 5 C -0.023 4.023 6 C -0.164 4.164 7 C 0.037 3.963 8 C -0.562 4.562 9 H 0.063 0.937 10 C -0.181 4.181 11 N -0.560 5.560 12 Si 0.780 3.220 13 H -0.199 1.199 14 H -0.203 1.203 15 H -0.196 1.196 16 C 0.058 3.942 17 C -0.157 4.157 18 C -0.180 4.180 19 C -0.180 4.180 20 N -0.228 5.228 21 H 0.102 0.898 22 H 0.155 0.845 23 H 0.105 0.895 24 H 0.199 0.801 25 H 0.040 0.960 26 H 0.034 0.966 27 H 0.076 0.924 28 H 0.137 0.863 29 H 0.118 0.882 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.529 -15.116 2.101 15.271 hybrid contribution -0.760 2.899 -0.828 3.109 sum -1.289 -12.217 1.273 12.351 Atomic orbital electron populations 1.23583 0.91771 1.07873 1.06775 1.85401 1.09467 0.91824 1.91428 1.25325 0.87211 1.01788 0.97930 1.68682 1.34300 1.04253 1.17354 1.23312 0.96786 0.91149 0.91016 1.21957 0.94734 1.00278 0.99452 1.17919 0.96976 0.84651 0.96734 1.21145 1.49497 0.93348 0.92245 0.93669 1.25701 0.94706 0.96755 1.00940 1.70039 1.49513 1.03670 1.32758 0.85594 0.78331 0.77984 0.80065 1.19931 1.20312 1.19577 1.20863 0.95839 0.87503 0.89958 1.20998 0.86028 1.00842 1.07878 1.22994 0.98164 0.97810 0.99075 1.22992 1.00772 1.03047 0.91194 1.68150 1.21612 1.16429 1.16571 0.89770 0.84531 0.89487 0.80113 0.95954 0.96627 0.92405 0.86319 0.88228 0.86611 0.86372 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 9.62 113.37 1.09 -1.53 16 2 S -0.01 -0.35 22.90 -56.49 -1.29 -1.64 16 3 C 0.25 9.32 7.85 180.43 1.42 10.73 16 4 N -0.53 -19.61 9.14 -196.43 -1.79 -21.41 16 5 C 0.14 5.70 10.98 84.73 0.93 6.63 16 6 C -0.16 -6.90 5.10 -19.68 -0.10 -7.00 16 7 C 0.08 3.76 4.48 29.10 0.13 3.89 16 8 C -0.52 -28.22 8.67 25.60 0.22 -28.00 16 9 H 0.04 2.47 7.74 -2.91 -0.02 2.45 16 10 C 0.02 1.00 5.46 84.66 0.46 1.46 16 11 N -0.92 -52.18 13.29 21.45 0.28 -51.89 16 12 Si 0.96 42.64 29.54 68.60 2.03 44.66 16 13 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 14 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 15 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 16 C 0.21 8.56 6.48 42.58 0.28 8.84 16 17 C -0.14 -5.19 5.23 -11.54 -0.06 -5.25 16 18 C -0.14 -4.29 10.04 30.62 0.31 -3.98 16 19 C -0.14 -4.24 10.24 30.62 0.31 -3.93 16 20 N -0.51 -20.15 9.45 -184.52 -1.74 -21.89 16 21 H 0.08 1.82 8.11 -2.40 -0.02 1.80 16 22 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 23 H 0.09 1.81 8.11 -2.40 -0.02 1.80 16 24 H 0.18 6.38 8.06 -2.91 -0.02 6.36 16 25 H 0.02 1.17 7.05 -2.38 -0.02 1.15 16 26 H 0.02 0.81 8.07 -2.39 -0.02 0.79 16 27 H 0.27 14.27 8.31 -92.70 -0.77 13.50 16 28 H 0.12 5.04 6.74 -2.39 -0.02 5.02 16 29 H 0.10 3.07 7.61 -2.39 -0.02 3.05 16 30 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 31 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 32 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -61.42 292.14 3.58 -57.84 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 1.12 Total: 12.47 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: 4.99 Total: -18.14 kcal Atomic # 7 Polarization: -91.93 SS G_CDS: -3.25 Total: -95.19 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: -0.35 SS G_CDS: -1.29 Total: -1.64 kcal Total: -61.42 3.58 -57.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260083619.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.504 kcal (2) G-P(sol) polarization free energy of solvation -61.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds