Wall clock time and date at job start Mon Mar 30 2020 05:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99904 * 2 1 4 4 H 1.48496 * 109.47345 * 269.99900 * 3 2 1 5 5 H 1.48507 * 109.47031 * 30.00182 * 3 2 1 6 6 H 1.48499 * 109.47103 * 150.00012 * 3 2 1 7 7 C 1.37880 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99999 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99546 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47011 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.86320 * 308.80557 * 10 9 7 12 12 C 1.54914 * 110.97886 * 184.99708 * 10 9 7 13 13 O 1.44195 * 103.07888 * 206.28756 * 12 10 9 14 14 C 1.43368 * 107.28523 * 21.43839 * 13 12 10 15 15 H 1.09008 * 109.63232 * 240.93794 * 14 13 12 16 16 C 1.50699 * 109.63401 * 120.54509 * 14 13 12 17 17 C 1.38281 * 119.97459 * 241.06973 * 16 14 13 18 18 C 1.38250 * 120.11168 * 180.02562 * 17 16 14 19 19 C 1.38158 * 120.05410 * 359.97438 * 18 17 16 20 20 C 1.38711 * 119.94786 * 0.03976 * 19 18 17 21 21 O 1.35901 * 120.05828 * 180.02562 * 20 19 18 22 22 C 1.38125 * 119.96685 * 61.09286 * 16 14 13 23 23 O 1.43748 * 108.67098 * 0.73965 * 14 13 12 24 24 H 0.96993 * 120.00120 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47863 * 60.00003 * 9 7 2 26 26 H 1.09009 * 109.47006 * 299.99844 * 9 7 2 27 27 H 1.09004 * 110.69314 * 87.89385 * 12 10 9 28 28 H 1.08994 * 110.69462 * 324.68994 * 12 10 9 29 29 H 1.07999 * 119.94699 * 0.02562 * 17 16 14 30 30 H 1.08004 * 119.96840 * 180.02562 * 18 17 16 31 31 H 1.08005 * 120.02403 * 179.97438 * 19 18 17 32 32 H 0.96701 * 113.99785 * 269.95941 * 21 20 19 33 33 H 1.07994 * 120.03307 * 359.70764 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 1 3.5489 -3.2154 0.7944 12 6 5.5649 -2.6790 0.1276 13 8 5.9099 -3.9281 -0.5050 14 6 4.8219 -4.2830 -1.3685 15 1 4.3984 -5.2360 -1.0513 16 6 5.3176 -4.3965 -2.7871 17 6 4.8011 -3.5696 -3.7677 18 6 5.2534 -3.6717 -5.0701 19 6 6.2234 -4.6003 -5.3949 20 6 6.7430 -5.4311 -4.4132 21 8 7.6977 -6.3450 -4.7301 22 6 6.2872 -5.3269 -3.1068 23 8 3.8175 -3.2577 -1.2885 24 1 -0.4850 0.8400 0.0004 25 1 3.8746 -0.6800 0.8911 26 1 3.8752 -0.6803 -0.8889 27 1 5.8655 -2.6820 1.1753 28 1 6.0181 -1.8410 -0.4019 29 1 4.0430 -2.8428 -3.5157 30 1 4.8486 -3.0244 -5.8341 31 1 6.5762 -4.6799 -6.4126 32 1 7.3456 -7.2063 -4.9936 33 1 6.6935 -5.9695 -2.3398 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260097633.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:01 Heat of formation + Delta-G solvation = -107.047605 kcal Electronic energy + Delta-G solvation = -17947.507106 eV Core-core repulsion = 14938.603407 eV Total energy + Delta-G solvation = -3008.903698 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.36473 -39.27681 -36.67282 -34.78788 -33.32211 -31.98265 -30.64135 -29.58625 -27.30200 -24.83642 -23.24326 -22.40449 -21.34252 -20.48200 -18.23767 -17.32399 -16.51870 -16.45188 -16.14334 -15.52581 -15.19260 -14.74048 -14.26163 -14.24077 -13.70452 -13.25457 -12.84642 -12.55817 -12.37434 -12.10154 -11.96784 -11.78622 -11.51999 -11.34226 -10.70859 -10.57977 -10.19692 -9.78021 -9.65590 -9.41558 -9.21649 -8.89134 -8.60334 -8.58652 -6.09122 -4.08008 1.23488 1.32683 3.26683 3.34357 3.34805 3.54265 3.91089 4.02664 4.36018 4.39196 4.91965 4.96021 5.07480 5.22095 5.24932 5.38869 5.46113 5.54249 5.59171 5.61279 5.85890 5.94157 5.99037 6.19663 6.36882 6.42913 6.51502 6.62837 6.81761 6.91976 7.09124 7.51931 7.56983 7.66899 8.45668 8.95827 9.50912 11.04188 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.032885 B = 0.005290 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.239123 B = 5291.653895 C = 5664.969110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.517 4.517 8 H 0.075 0.925 9 C -0.008 4.008 10 C 0.069 3.931 11 H 0.082 0.918 12 C 0.018 3.982 13 O -0.387 6.387 14 C 0.269 3.731 15 H 0.090 0.910 16 C -0.090 4.090 17 C -0.092 4.092 18 C -0.110 4.110 19 C -0.142 4.142 20 C 0.091 3.909 21 O -0.500 6.500 22 C -0.119 4.119 23 O -0.353 6.353 24 H 0.264 0.736 25 H 0.036 0.964 26 H 0.025 0.975 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.143 0.857 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.386 0.614 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.354 -9.652 -6.854 17.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.555 4.555 8 H 0.094 0.906 9 C -0.045 4.045 10 C 0.012 3.988 11 H 0.099 0.901 12 C -0.058 4.058 13 O -0.308 6.308 14 C 0.173 3.827 15 H 0.107 0.893 16 C -0.090 4.090 17 C -0.110 4.110 18 C -0.128 4.128 19 C -0.161 4.161 20 C 0.047 3.953 21 O -0.309 6.309 22 C -0.138 4.138 23 O -0.273 6.273 24 H 0.074 0.926 25 H 0.054 0.946 26 H 0.043 0.957 27 H 0.115 0.885 28 H 0.091 0.909 29 H 0.161 0.839 30 H 0.146 0.854 31 H 0.143 0.857 32 H 0.242 0.758 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 12.605 -9.136 -6.847 17.007 hybrid contribution 0.036 0.532 -0.083 0.539 sum 12.641 -8.604 -6.930 16.789 Atomic orbital electron populations 1.69902 1.06260 1.26943 1.50732 1.24991 0.94749 0.99014 0.94531 0.86818 0.80264 0.83794 0.78634 1.20171 1.21244 1.19079 1.20973 0.88638 0.94788 1.51092 0.90647 1.19647 0.98436 0.88815 0.97590 1.24047 0.91797 0.98176 0.84760 0.90050 1.24428 0.96599 0.86202 0.98570 1.88826 1.42171 1.39765 1.60044 1.22571 0.79831 0.93288 0.87038 0.89285 1.20037 0.97134 0.96502 0.95367 1.21295 0.99516 0.98153 0.92040 1.21091 0.96786 0.98254 0.96699 1.21426 0.97584 0.97797 0.99271 1.18337 0.91297 0.93579 0.92101 1.84839 1.32266 1.24745 1.89087 1.21114 0.96673 0.99866 0.96142 1.89303 1.51496 1.49285 1.37263 0.92626 0.94600 0.95662 0.88530 0.90923 0.83947 0.85363 0.85650 0.75848 0.85304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.96 55.43 0.77 -26.59 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.11 27.47 -169.99 -4.67 16.44 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 7 C -0.52 -14.42 9.62 -34.44 -0.33 -14.75 16 8 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 9 C -0.01 -0.18 3.82 -27.89 -0.11 -0.28 16 10 C 0.07 1.35 3.41 -25.72 -0.09 1.27 16 11 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 12 C 0.02 0.30 7.54 38.17 0.29 0.59 16 13 O -0.39 -6.58 11.11 -59.05 -0.66 -7.23 16 14 C 0.27 4.53 4.31 36.01 0.16 4.68 16 15 H 0.09 1.36 8.14 -51.92 -0.42 0.94 16 16 C -0.09 -1.41 5.56 -104.65 -0.58 -1.99 16 17 C -0.09 -1.43 9.38 -39.56 -0.37 -1.80 16 18 C -0.11 -1.43 10.04 -39.61 -0.40 -1.83 16 19 C -0.14 -1.73 9.99 -39.44 -0.39 -2.12 16 20 C 0.09 1.17 6.71 -39.21 -0.26 0.90 16 21 O -0.50 -5.47 13.50 -19.43 -0.26 -5.73 16 22 C -0.12 -1.67 9.57 -39.43 -0.38 -2.04 16 23 O -0.35 -7.12 9.49 -59.05 -0.56 -7.68 16 24 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.04 0.79 7.20 -51.93 -0.37 0.42 16 26 H 0.03 0.58 7.57 -51.92 -0.39 0.19 16 27 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.07 1.18 8.04 -51.93 -0.42 0.76 16 29 H 0.14 2.42 7.00 -52.49 -0.37 2.06 16 30 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 31 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 32 H 0.39 2.23 9.06 45.56 0.41 2.64 16 33 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 285.46 15.07 4.30 4.30 Total: -1.00 -32.29 285.46 -6.90 -39.19 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -3.26 Total: 2.84 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -2.57 Total: -15.53 kcal Atomic # 7 Polarization: -27.37 SS G_CDS: 0.77 Total: -26.59 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -1.48 Total: -20.64 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.29 -6.90 -39.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260097633.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.862 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds