Wall clock time and date at job start Mon Mar 30 2020 05:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99904 * 2 1 4 4 H 1.48496 * 109.47345 * 269.99900 * 3 2 1 5 5 H 1.48507 * 109.47031 * 30.00182 * 3 2 1 6 6 H 1.48499 * 109.47103 * 150.00012 * 3 2 1 7 7 C 1.37880 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99999 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99546 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47011 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.86320 * 308.80557 * 10 9 7 12 12 C 1.54914 * 110.97886 * 184.99708 * 10 9 7 13 13 O 1.44195 * 103.07888 * 206.28756 * 12 10 9 14 14 C 1.43368 * 107.28523 * 21.43839 * 13 12 10 15 15 H 1.09008 * 109.63232 * 240.93794 * 14 13 12 16 16 C 1.50699 * 109.63401 * 120.54509 * 14 13 12 17 17 C 1.38281 * 119.97459 * 241.06973 * 16 14 13 18 18 C 1.38250 * 120.11168 * 180.02562 * 17 16 14 19 19 C 1.38158 * 120.05410 * 359.97438 * 18 17 16 20 20 C 1.38711 * 119.94786 * 0.03976 * 19 18 17 21 21 O 1.35901 * 120.05828 * 180.02562 * 20 19 18 22 22 C 1.38125 * 119.96685 * 61.09286 * 16 14 13 23 23 O 1.43748 * 108.67098 * 0.73965 * 14 13 12 24 24 H 0.96993 * 120.00120 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47863 * 60.00003 * 9 7 2 26 26 H 1.09009 * 109.47006 * 299.99844 * 9 7 2 27 27 H 1.09004 * 110.69314 * 87.89385 * 12 10 9 28 28 H 1.08994 * 110.69462 * 324.68994 * 12 10 9 29 29 H 1.07999 * 119.94699 * 0.02562 * 17 16 14 30 30 H 1.08004 * 119.96840 * 180.02562 * 18 17 16 31 31 H 1.08005 * 120.02403 * 179.97438 * 19 18 17 32 32 H 0.96701 * 113.99785 * 269.95941 * 21 20 19 33 33 H 1.07994 * 120.03307 * 359.70764 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 1 3.5489 -3.2154 0.7944 12 6 5.5649 -2.6790 0.1276 13 8 5.9099 -3.9281 -0.5050 14 6 4.8219 -4.2830 -1.3685 15 1 4.3984 -5.2360 -1.0513 16 6 5.3176 -4.3965 -2.7871 17 6 4.8011 -3.5696 -3.7677 18 6 5.2534 -3.6717 -5.0701 19 6 6.2234 -4.6003 -5.3949 20 6 6.7430 -5.4311 -4.4132 21 8 7.6977 -6.3450 -4.7301 22 6 6.2872 -5.3269 -3.1068 23 8 3.8175 -3.2577 -1.2885 24 1 -0.4850 0.8400 0.0004 25 1 3.8746 -0.6800 0.8911 26 1 3.8752 -0.6803 -0.8889 27 1 5.8655 -2.6820 1.1753 28 1 6.0181 -1.8410 -0.4019 29 1 4.0430 -2.8428 -3.5157 30 1 4.8486 -3.0244 -5.8341 31 1 6.5762 -4.6799 -6.4126 32 1 7.3456 -7.2063 -4.9936 33 1 6.6935 -5.9695 -2.3398 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260097633.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:01 Heat of formation + Delta-G solvation = -130.340397 kcal Electronic energy + Delta-G solvation = -17948.517157 eV Core-core repulsion = 14938.603407 eV Total energy + Delta-G solvation = -3009.913749 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.66473 -40.35861 -37.63463 -36.27248 -35.20905 -33.51580 -32.10182 -30.66558 -28.93880 -26.14369 -24.87394 -23.57084 -22.51737 -22.07429 -19.24583 -19.13895 -18.20915 -17.60029 -17.34969 -16.81583 -16.32346 -16.14150 -15.96189 -15.47661 -14.82434 -14.73325 -14.47080 -14.03733 -13.81168 -13.71785 -13.27039 -13.10763 -13.02439 -12.51624 -12.39622 -11.95443 -11.72665 -11.57043 -11.49068 -11.02233 -10.78601 -10.66849 -9.94156 -9.62833 -8.28760 -6.33672 0.18314 0.29587 1.37839 1.38997 1.49968 2.35585 2.38698 2.67570 2.88016 3.07438 3.34129 3.60214 3.80824 3.95139 4.01255 4.13754 4.24802 4.28493 4.39081 4.53318 4.60616 4.69894 4.84830 4.88783 4.97712 5.08703 5.31061 5.37095 5.45024 5.53461 5.58683 5.82814 6.12236 6.25007 6.72209 6.85380 7.29191 8.88336 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.032885 B = 0.005290 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.239123 B = 5291.653895 C = 5664.969110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.005 3.995 3 Si 0.950 3.050 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.237 1.237 7 C -0.526 4.526 8 H 0.028 0.972 9 C -0.004 4.004 10 C 0.064 3.936 11 H 0.077 0.923 12 C 0.028 3.972 13 O -0.389 6.389 14 C 0.266 3.734 15 H 0.101 0.899 16 C -0.106 4.106 17 C -0.117 4.117 18 C -0.107 4.107 19 C -0.138 4.138 20 C 0.099 3.901 21 O -0.504 6.504 22 C -0.127 4.127 23 O -0.381 6.381 24 H 0.267 0.733 25 H 0.055 0.945 26 H 0.026 0.974 27 H 0.129 0.871 28 H 0.078 0.922 29 H 0.117 0.883 30 H 0.149 0.851 31 H 0.154 0.846 32 H 0.411 0.589 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.193 -9.492 -7.607 19.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.192 4.192 3 Si 0.773 3.227 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.160 1.160 7 C -0.564 4.564 8 H 0.047 0.953 9 C -0.041 4.041 10 C 0.007 3.993 11 H 0.095 0.905 12 C -0.048 4.048 13 O -0.310 6.310 14 C 0.171 3.829 15 H 0.118 0.882 16 C -0.107 4.107 17 C -0.136 4.136 18 C -0.125 4.125 19 C -0.156 4.156 20 C 0.055 3.945 21 O -0.318 6.318 22 C -0.145 4.145 23 O -0.302 6.302 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.044 0.956 27 H 0.146 0.854 28 H 0.096 0.904 29 H 0.135 0.865 30 H 0.167 0.833 31 H 0.172 0.828 32 H 0.270 0.730 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 15.463 -9.018 -7.601 19.448 hybrid contribution -0.876 0.320 0.081 0.936 sum 14.588 -8.698 -7.521 18.574 Atomic orbital electron populations 1.70070 1.08434 1.28208 1.52500 1.26006 0.95621 1.03508 0.94028 0.85661 0.79836 0.78053 0.79125 1.19627 1.20940 1.15988 1.21262 0.91477 0.93107 1.50551 0.95339 1.19558 0.94869 0.91451 0.98226 1.23939 0.94371 0.96221 0.84727 0.90512 1.24428 0.93608 0.86258 1.00477 1.88811 1.42109 1.39974 1.60117 1.22744 0.79285 0.92720 0.88174 0.88234 1.19998 0.98351 0.97725 0.94603 1.21205 1.00132 0.98651 0.93570 1.21308 0.96665 0.98536 0.95950 1.21719 0.96673 0.96694 1.00525 1.18399 0.90669 0.93761 0.91684 1.84778 1.31995 1.25963 1.89023 1.21201 0.96477 0.99648 0.97193 1.89283 1.52995 1.50458 1.37417 0.92463 0.92661 0.95587 0.85362 0.90423 0.86525 0.83303 0.82787 0.72970 0.84518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.82 13.96 21.45 0.30 -59.52 16 2 C 0.01 0.29 5.47 84.65 0.46 0.76 16 3 Si 0.95 43.21 27.47 68.60 1.88 45.09 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.24 -9.58 6.54 99.48 0.65 -8.93 16 7 C -0.53 -30.25 9.62 25.60 0.25 -30.01 16 8 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 9 C 0.00 -0.17 3.82 29.85 0.11 -0.06 16 10 C 0.06 2.52 3.41 31.25 0.11 2.63 16 11 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 12 C 0.03 0.87 7.54 72.64 0.55 1.42 16 13 O -0.39 -12.69 11.11 -126.20 -1.40 -14.10 16 14 C 0.27 8.97 4.31 71.24 0.31 9.28 16 15 H 0.10 3.06 8.14 -2.38 -0.02 3.04 16 16 C -0.11 -3.31 5.56 -19.88 -0.11 -3.42 16 17 C -0.12 -3.67 9.38 22.28 0.21 -3.46 16 18 C -0.11 -2.62 10.04 22.25 0.22 -2.39 16 19 C -0.14 -2.96 9.99 22.36 0.22 -2.73 16 20 C 0.10 2.28 6.71 22.51 0.15 2.44 16 21 O -0.50 -9.35 13.50 -92.44 -1.25 -10.60 16 22 C -0.13 -3.34 9.57 22.37 0.21 -3.13 16 23 O -0.38 -15.77 9.49 -126.20 -1.20 -16.97 16 24 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 25 H 0.06 2.30 7.20 -2.39 -0.02 2.28 16 26 H 0.03 1.17 7.57 -2.38 -0.02 1.16 16 27 H 0.13 3.15 8.14 -2.38 -0.02 3.13 16 28 H 0.08 2.34 8.04 -2.39 -0.02 2.32 16 29 H 0.12 4.19 7.00 -2.91 -0.02 4.17 16 30 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 31 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 32 H 0.41 3.29 9.06 -74.06 -0.67 2.61 16 33 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -71.55 285.46 1.43 -70.12 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.40 Total: 14.66 kcal Atomic # 6 Polarization: -31.38 SS G_CDS: 2.69 Total: -28.69 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: 0.30 Total: -59.52 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -3.85 Total: -41.67 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.88 Total: 45.09 kcal Total: -71.55 1.43 -70.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260097633.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.220 kcal (2) G-P(sol) polarization free energy of solvation -71.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds