Wall clock time and date at job start Mon Mar 30 2020 06:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38246 * 119.95904 * 2 1 4 4 C 1.38130 * 120.08038 * 179.97438 * 3 2 1 5 5 C 1.38776 * 119.99442 * 0.02562 * 4 3 2 6 6 O 1.35898 * 120.04232 * 179.97438 * 5 4 3 7 7 C 1.38663 * 119.91383 * 359.96033 * 5 4 3 8 8 C 1.50699 * 120.04146 * 180.29438 * 7 5 4 9 9 H 1.08997 * 109.47424 * 179.72052 * 8 7 5 10 10 C 1.50701 * 109.46903 * 59.72116 * 8 7 5 11 11 H 1.08008 * 120.00077 * 273.49835 * 10 8 7 12 12 C 1.37881 * 120.00279 * 93.50166 * 10 8 7 13 13 N 1.31519 * 119.99390 * 6.96799 * 12 10 8 14 14 Si 1.86800 * 120.00068 * 186.97050 * 12 10 8 15 15 H 1.48499 * 109.47162 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47020 * 119.99930 * 14 12 10 17 17 H 1.48505 * 109.46808 * 239.99741 * 14 12 10 18 18 C 1.52997 * 109.47224 * 299.72196 * 8 7 5 19 19 C 1.52993 * 117.50056 * 249.22272 * 18 8 7 20 20 C 1.52999 * 117.50073 * 180.59746 * 18 8 7 21 21 C 1.38387 * 119.91973 * 0.02562 * 7 5 4 22 22 F 1.35107 * 119.99551 * 180.02562 * 21 7 5 23 23 H 1.09001 * 109.46940 * 270.02357 * 1 2 3 24 24 H 1.08999 * 109.46951 * 30.01510 * 1 2 3 25 25 H 1.08988 * 109.47115 * 150.02160 * 1 2 3 26 26 H 1.08001 * 119.96101 * 0.02849 * 3 2 1 27 27 H 1.07999 * 120.00428 * 180.02562 * 4 3 2 28 28 H 0.96699 * 114.00683 * 269.96205 * 6 5 4 29 29 H 0.97003 * 119.99223 * 180.02562 * 13 12 10 30 30 H 1.09004 * 115.54959 * 34.92894 * 18 8 7 31 31 H 1.09003 * 117.50077 * 359.97438 * 19 18 8 32 32 H 1.08999 * 117.49977 * 145.02053 * 19 18 8 33 33 H 1.09000 * 117.49485 * 214.97937 * 20 18 8 34 34 H 1.08993 * 117.50063 * 0.02562 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1975 1.1977 0.0000 4 6 3.5788 1.2007 0.0005 5 6 4.2751 0.0002 0.0005 6 8 5.6340 0.0020 0.0005 7 6 3.5824 -1.2010 0.0008 8 6 4.3356 -2.5062 0.0075 9 1 3.6271 -3.3346 0.0118 10 6 5.2019 -2.5799 1.2384 11 1 6.1940 -2.1531 1.2269 12 6 4.7281 -3.1921 2.3794 13 7 3.5787 -3.8309 2.3539 14 14 5.7187 -3.1143 3.9612 15 1 6.9656 -2.3427 3.7270 16 1 4.9144 -2.4478 5.0166 17 1 6.0637 -4.4913 4.3974 18 6 5.2152 -2.5939 -1.2412 19 6 4.8270 -3.6193 -2.3082 20 6 6.0543 -3.8597 -1.4269 21 6 2.1985 -1.1998 0.0006 22 9 1.5220 -2.3693 0.0014 23 1 -0.3633 0.0004 1.0277 24 1 -0.3633 0.8898 -0.5141 25 1 -0.3633 -0.8901 -0.5134 26 1 1.6561 2.1323 0.0005 27 1 4.1168 2.1371 0.0010 28 1 6.0275 0.0019 -0.8828 29 1 3.2452 -4.2613 3.1567 30 1 5.6443 -1.6513 -1.5811 31 1 3.9452 -4.2318 -2.1205 32 1 5.0006 -3.3514 -3.3504 33 1 7.0353 -3.7498 -1.8892 34 1 5.9794 -4.6302 -0.6596 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260107568.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:23 Heat of formation + Delta-G solvation = -48.437402 kcal Electronic energy + Delta-G solvation = -18818.196012 eV Core-core repulsion = 15824.206633 eV Total energy + Delta-G solvation = -2993.989380 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -47.88189 -39.19528 -36.64664 -35.95530 -32.98615 -31.43710 -30.43551 -27.29962 -25.66641 -23.74195 -21.52477 -21.43327 -20.92534 -19.27510 -17.69219 -16.59180 -15.78218 -15.54486 -15.08385 -14.75640 -14.54213 -14.04688 -13.63568 -13.18944 -12.91064 -12.84726 -12.52423 -12.33127 -11.72812 -11.34905 -11.13413 -11.09906 -10.88363 -10.71911 -10.57760 -10.42341 -10.09569 -9.88409 -9.43435 -9.06081 -8.77271 -8.38470 -7.76167 -7.64925 -5.99340 -3.99024 1.79870 1.99908 3.32802 3.41024 3.46995 4.18002 4.45740 4.77675 4.79718 5.17576 5.27989 5.34566 5.43754 5.63501 5.75050 5.82086 5.87393 5.91724 5.96618 6.11987 6.30525 6.35346 6.44745 6.57480 6.68948 6.76716 6.81602 6.94702 7.02291 7.14212 7.30227 7.60032 7.81840 7.97202 8.34549 8.44191 9.09362 9.61384 11.08256 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.016692 B = 0.010311 C = 0.009078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.089867 B = 2714.871078 C = 3083.489988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.141 4.141 3 C -0.112 4.112 4 C -0.164 4.164 5 C 0.127 3.873 6 O -0.475 6.475 7 C -0.078 4.078 8 C 0.094 3.906 9 H 0.076 0.924 10 C -0.483 4.483 11 H 0.066 0.934 12 C 0.061 3.939 13 N -0.885 5.885 14 Si 0.889 3.111 15 H -0.271 1.271 16 H -0.285 1.285 17 H -0.286 1.286 18 C -0.117 4.117 19 C -0.203 4.203 20 C -0.165 4.165 21 C 0.108 3.892 22 F -0.130 7.130 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.121 0.879 27 H 0.120 0.880 28 H 0.372 0.628 29 H 0.260 0.740 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.792 6.932 -7.279 10.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.142 4.142 3 C -0.130 4.130 4 C -0.183 4.183 5 C 0.082 3.918 6 O -0.284 6.284 7 C -0.080 4.080 8 C 0.076 3.924 9 H 0.094 0.906 10 C -0.520 4.520 11 H 0.084 0.916 12 C -0.142 4.142 13 N -0.523 5.523 14 Si 0.717 3.283 15 H -0.195 1.195 16 H -0.212 1.212 17 H -0.212 1.212 18 C -0.135 4.135 19 C -0.240 4.240 20 C -0.202 4.202 21 C 0.088 3.912 22 F -0.109 7.109 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.139 0.861 27 H 0.138 0.862 28 H 0.227 0.773 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.003 6.764 -6.541 9.620 hybrid contribution 0.431 -0.077 0.602 0.745 sum -1.572 6.687 -5.938 9.080 Atomic orbital electron populations 1.20607 0.91166 1.02276 1.02119 1.19820 0.96313 0.92307 1.05787 1.20386 0.93382 0.96327 1.02896 1.21296 0.94347 0.97579 1.05046 1.17953 0.83124 0.90701 1.00045 1.84963 1.15563 1.96224 1.31621 1.21224 0.91778 0.99116 0.95889 1.17603 0.93686 0.89866 0.91266 0.90634 1.20961 1.00526 1.35433 0.95116 0.91566 1.25045 0.95210 0.94824 0.99084 1.69967 1.19834 1.34004 1.28453 0.86576 0.80458 0.77563 0.83730 1.19517 1.21158 1.21191 1.22356 1.01957 0.91991 0.97214 1.23026 0.99950 1.05753 0.95256 1.22697 0.93527 1.01916 1.02078 1.17237 0.89573 0.80682 1.03684 1.91459 1.79650 1.46098 1.93667 0.91535 0.91868 0.91669 0.86120 0.86176 0.77279 0.92996 0.90404 0.89452 0.90582 0.90556 0.88468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.56 9.83 36.01 0.35 -1.21 16 2 C -0.14 -2.61 5.89 -104.53 -0.62 -3.22 16 3 C -0.11 -1.85 9.69 -39.62 -0.38 -2.23 16 4 C -0.16 -2.86 9.99 -39.42 -0.39 -3.25 16 5 C 0.13 2.57 6.19 -39.23 -0.24 2.33 16 6 O -0.47 -9.13 11.10 -19.42 -0.22 -9.34 16 7 C -0.08 -1.78 4.79 -104.41 -0.50 -2.28 16 8 C 0.09 2.30 2.13 -92.93 -0.20 2.10 16 9 H 0.08 2.09 6.01 -51.93 -0.31 1.78 16 10 C -0.48 -13.01 6.97 -34.44 -0.24 -13.25 16 11 H 0.07 1.81 7.42 -52.48 -0.39 1.42 16 12 C 0.06 1.70 5.45 -17.82 -0.10 1.60 16 13 N -0.89 -25.83 12.79 55.43 0.71 -25.12 16 14 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 15 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 C -0.12 -2.38 4.73 -90.62 -0.43 -2.81 16 19 C -0.20 -3.72 10.18 -26.73 -0.27 -3.99 16 20 C -0.17 -3.17 9.89 -26.73 -0.26 -3.43 16 21 C 0.11 2.39 7.18 -39.44 -0.28 2.11 16 22 F -0.13 -3.09 15.40 2.25 0.03 -3.05 16 23 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 25 H 0.06 0.97 7.63 -51.94 -0.40 0.58 16 26 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 27 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 28 H 0.37 5.37 7.47 45.56 0.34 5.71 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.08 1.42 5.64 -51.93 -0.29 1.12 16 31 H 0.09 1.69 8.05 -51.93 -0.42 1.27 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.10 2.07 8.14 -51.93 -0.42 1.64 16 LS Contribution 290.35 15.07 4.38 4.38 Total: -1.00 -30.51 290.35 -7.24 -37.76 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -3.56 Total: 6.02 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: -3.56 Total: -27.54 kcal Atomic # 7 Polarization: -25.83 SS G_CDS: 0.71 Total: -25.12 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -0.22 Total: -9.34 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.03 Total: -3.05 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.51 -7.24 -37.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260107568.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.681 kcal (2) G-P(sol) polarization free energy of solvation -30.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds