Wall clock time and date at job start Mon Mar 30 2020 06:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38246 * 119.95904 * 2 1 4 4 C 1.38130 * 120.08038 * 179.97438 * 3 2 1 5 5 C 1.38776 * 119.99442 * 0.02562 * 4 3 2 6 6 O 1.35898 * 120.04232 * 179.97438 * 5 4 3 7 7 C 1.38663 * 119.91383 * 359.96033 * 5 4 3 8 8 C 1.50699 * 120.04146 * 180.29438 * 7 5 4 9 9 H 1.08997 * 109.47424 * 179.72052 * 8 7 5 10 10 C 1.50701 * 109.46903 * 59.72116 * 8 7 5 11 11 H 1.08008 * 120.00077 * 273.49835 * 10 8 7 12 12 C 1.37881 * 120.00279 * 93.50166 * 10 8 7 13 13 N 1.31519 * 119.99390 * 6.96799 * 12 10 8 14 14 Si 1.86800 * 120.00068 * 186.97050 * 12 10 8 15 15 H 1.48499 * 109.47162 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47020 * 119.99930 * 14 12 10 17 17 H 1.48505 * 109.46808 * 239.99741 * 14 12 10 18 18 C 1.52997 * 109.47224 * 299.72196 * 8 7 5 19 19 C 1.52993 * 117.50056 * 249.22272 * 18 8 7 20 20 C 1.52999 * 117.50073 * 180.59746 * 18 8 7 21 21 C 1.38387 * 119.91973 * 0.02562 * 7 5 4 22 22 F 1.35107 * 119.99551 * 180.02562 * 21 7 5 23 23 H 1.09001 * 109.46940 * 270.02357 * 1 2 3 24 24 H 1.08999 * 109.46951 * 30.01510 * 1 2 3 25 25 H 1.08988 * 109.47115 * 150.02160 * 1 2 3 26 26 H 1.08001 * 119.96101 * 0.02849 * 3 2 1 27 27 H 1.07999 * 120.00428 * 180.02562 * 4 3 2 28 28 H 0.96699 * 114.00683 * 269.96205 * 6 5 4 29 29 H 0.97003 * 119.99223 * 180.02562 * 13 12 10 30 30 H 1.09004 * 115.54959 * 34.92894 * 18 8 7 31 31 H 1.09003 * 117.50077 * 359.97438 * 19 18 8 32 32 H 1.08999 * 117.49977 * 145.02053 * 19 18 8 33 33 H 1.09000 * 117.49485 * 214.97937 * 20 18 8 34 34 H 1.08993 * 117.50063 * 0.02562 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1975 1.1977 0.0000 4 6 3.5788 1.2007 0.0005 5 6 4.2751 0.0002 0.0005 6 8 5.6340 0.0020 0.0005 7 6 3.5824 -1.2010 0.0008 8 6 4.3356 -2.5062 0.0075 9 1 3.6271 -3.3346 0.0118 10 6 5.2019 -2.5799 1.2384 11 1 6.1940 -2.1531 1.2269 12 6 4.7281 -3.1921 2.3794 13 7 3.5787 -3.8309 2.3539 14 14 5.7187 -3.1143 3.9612 15 1 6.9656 -2.3427 3.7270 16 1 4.9144 -2.4478 5.0166 17 1 6.0637 -4.4913 4.3974 18 6 5.2152 -2.5939 -1.2412 19 6 4.8270 -3.6193 -2.3082 20 6 6.0543 -3.8597 -1.4269 21 6 2.1985 -1.1998 0.0006 22 9 1.5220 -2.3693 0.0014 23 1 -0.3633 0.0004 1.0277 24 1 -0.3633 0.8898 -0.5141 25 1 -0.3633 -0.8901 -0.5134 26 1 1.6561 2.1323 0.0005 27 1 4.1168 2.1371 0.0010 28 1 6.0275 0.0019 -0.8828 29 1 3.2452 -4.2613 3.1567 30 1 5.6443 -1.6513 -1.5811 31 1 3.9452 -4.2318 -2.1205 32 1 5.0006 -3.3514 -3.3504 33 1 7.0353 -3.7498 -1.8892 34 1 5.9794 -4.6302 -0.6596 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260107568.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:23 Heat of formation + Delta-G solvation = -66.628825 kcal Electronic energy + Delta-G solvation = -18818.984852 eV Core-core repulsion = 15824.206633 eV Total energy + Delta-G solvation = -2994.778219 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.58917 -40.70205 -38.20820 -37.42294 -34.90263 -33.03347 -31.91826 -29.07254 -27.03851 -25.65832 -23.06388 -22.92463 -22.41433 -20.94727 -19.23017 -18.47369 -17.49790 -17.07280 -16.66543 -16.52736 -16.34152 -15.50213 -15.12440 -14.85378 -14.44427 -14.33659 -14.12650 -13.69805 -13.25806 -13.23393 -12.92693 -12.62834 -12.46599 -12.29232 -12.25852 -12.08466 -11.68832 -11.62538 -11.11472 -10.87328 -10.50395 -10.38567 -9.30869 -9.14964 -8.08649 -6.13672 0.33290 0.51707 1.35086 1.37630 1.49427 2.41651 2.73031 3.17425 3.25195 3.36811 3.76065 3.95139 4.05125 4.20754 4.28981 4.33566 4.47014 4.55243 4.77934 4.81566 4.85666 4.89376 4.99754 5.17888 5.20064 5.24907 5.36533 5.44657 5.50937 5.57962 5.66130 5.80593 5.94102 6.14042 6.36945 6.98973 7.08656 7.48706 8.98129 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.016692 B = 0.010311 C = 0.009078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.089867 B = 2714.871078 C = 3083.489988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.143 4.143 3 C -0.097 4.097 4 C -0.154 4.154 5 C 0.116 3.884 6 O -0.488 6.488 7 C -0.112 4.112 8 C 0.097 3.903 9 H 0.028 0.972 10 C -0.478 4.478 11 H 0.059 0.941 12 C 0.006 3.994 13 N -0.923 5.923 14 Si 0.943 3.057 15 H -0.264 1.264 16 H -0.288 1.288 17 H -0.282 1.282 18 C -0.132 4.132 19 C -0.187 4.187 20 C -0.165 4.165 21 C 0.067 3.933 22 F -0.154 7.154 23 H 0.070 0.930 24 H 0.101 0.899 25 H 0.055 0.945 26 H 0.169 0.831 27 H 0.156 0.844 28 H 0.392 0.608 29 H 0.256 0.744 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.322 9.928 -8.257 12.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.144 4.144 3 C -0.115 4.115 4 C -0.173 4.173 5 C 0.071 3.929 6 O -0.299 6.299 7 C -0.114 4.114 8 C 0.078 3.922 9 H 0.046 0.954 10 C -0.517 4.517 11 H 0.078 0.922 12 C -0.192 4.192 13 N -0.563 5.563 14 Si 0.770 3.230 15 H -0.188 1.188 16 H -0.215 1.215 17 H -0.208 1.208 18 C -0.150 4.150 19 C -0.224 4.224 20 C -0.202 4.202 21 C 0.048 3.952 22 F -0.132 7.132 23 H 0.088 0.912 24 H 0.120 0.880 25 H 0.074 0.926 26 H 0.186 0.814 27 H 0.174 0.826 28 H 0.250 0.750 29 H 0.065 0.935 30 H 0.122 0.878 31 H 0.085 0.915 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.513 9.765 -7.538 12.429 hybrid contribution 0.276 -0.928 0.818 1.267 sum -1.238 8.838 -6.720 11.171 Atomic orbital electron populations 1.20688 0.88789 1.03755 1.02787 1.20269 0.98234 0.91522 1.04406 1.20952 0.93294 0.97243 0.99977 1.21682 0.94928 0.97701 1.02962 1.18120 0.83502 0.90863 1.00393 1.84900 1.15284 1.96198 1.33538 1.21160 0.92365 0.99182 0.98723 1.17345 0.93021 0.89646 0.92176 0.95408 1.21193 1.00403 1.33959 0.96097 0.92235 1.25750 0.96216 0.95259 1.01977 1.70122 1.21605 1.35846 1.28716 0.85716 0.79256 0.77588 0.80436 1.18827 1.21452 1.20797 1.22313 1.02383 0.93650 0.96682 1.23031 0.98676 1.03975 0.96677 1.22701 0.95424 1.00345 1.01762 1.17767 0.89983 0.81356 1.06095 1.91389 1.80010 1.47685 1.94157 0.91152 0.88007 0.92611 0.81383 0.82617 0.75048 0.93518 0.87793 0.91544 0.86875 0.87255 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.85 9.83 71.24 0.70 -2.15 16 2 C -0.14 -5.03 5.89 -19.80 -0.12 -5.14 16 3 C -0.10 -2.79 9.69 22.25 0.22 -2.58 16 4 C -0.15 -4.79 9.99 22.37 0.22 -4.57 16 5 C 0.12 4.53 6.19 22.50 0.14 4.67 16 6 O -0.49 -17.85 11.10 -92.40 -1.03 -18.87 16 7 C -0.11 -5.19 4.79 -19.73 -0.09 -5.29 16 8 C 0.10 4.90 2.13 -12.29 -0.03 4.87 16 9 H 0.03 1.64 6.01 -2.39 -0.01 1.63 16 10 C -0.48 -26.52 6.97 25.60 0.18 -26.34 16 11 H 0.06 3.30 7.42 -2.91 -0.02 3.28 16 12 C 0.01 0.33 5.45 84.65 0.46 0.79 16 13 N -0.92 -56.69 12.79 21.45 0.27 -56.41 16 14 Si 0.94 46.14 29.54 68.60 2.03 48.17 16 15 H -0.26 -12.47 7.11 99.48 0.71 -11.77 16 16 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 17 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 18 C -0.13 -5.38 4.73 -10.80 -0.05 -5.43 16 19 C -0.19 -6.78 10.18 30.59 0.31 -6.47 16 20 C -0.17 -6.31 9.89 30.59 0.30 -6.01 16 21 C 0.07 3.04 7.18 22.36 0.16 3.20 16 22 F -0.15 -7.74 15.40 44.97 0.69 -7.04 16 23 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.10 1.99 8.08 -2.39 -0.02 1.97 16 25 H 0.05 1.62 7.63 -2.39 -0.02 1.61 16 26 H 0.17 3.28 8.06 -2.91 -0.02 3.26 16 27 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 28 H 0.39 10.37 7.47 -74.06 -0.55 9.82 16 29 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 30 H 0.10 3.62 5.64 -2.38 -0.01 3.60 16 31 H 0.07 2.67 8.05 -2.39 -0.02 2.66 16 32 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 33 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 34 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 Total: -1.00 -70.22 290.35 4.94 -65.28 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.57 Total: 19.32 kcal Atomic # 6 Polarization: -52.85 SS G_CDS: 2.40 Total: -50.45 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: 0.27 Total: -56.41 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -1.03 Total: -18.87 kcal Atomic # 9 Polarization: -7.74 SS G_CDS: 0.69 Total: -7.04 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -70.22 4.94 -65.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260107568.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.345 kcal (2) G-P(sol) polarization free energy of solvation -70.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds