Wall clock time and date at job start Mon Mar 30 2020 06:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00000 * 2 1 4 4 C 1.50701 * 109.46977 * 179.97438 * 3 2 1 5 5 C 1.38278 * 119.98880 * 359.97438 * 4 3 2 6 6 C 1.38208 * 120.14562 * 180.02562 * 5 4 3 7 7 C 1.38278 * 120.14191 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.98131 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46869 * 264.99385 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 7 12 12 N 1.31514 * 119.99985 * 180.27663 * 11 9 8 13 13 Si 1.86800 * 119.99777 * 0.28166 * 11 9 8 14 14 H 1.48498 * 109.47109 * 89.99834 * 13 11 9 15 15 H 1.48507 * 109.46754 * 209.99574 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99405 * 13 11 9 17 17 C 1.38498 * 120.03231 * 0.24621 * 7 6 5 18 18 C 1.38508 * 119.98389 * 179.97438 * 4 3 2 19 19 O 1.36501 * 131.53916 * 0.02657 * 18 4 3 20 20 C 1.43987 * 105.48330 * 197.25509 * 19 18 4 21 21 O 1.36501 * 131.53788 * 180.38597 * 17 7 6 22 22 H 1.09004 * 109.47641 * 300.00323 * 1 2 3 23 23 H 1.09000 * 109.47413 * 60.00192 * 1 2 3 24 24 H 1.09005 * 109.47471 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47627 * 60.00024 * 3 2 1 26 26 H 1.09005 * 109.46964 * 299.99480 * 3 2 1 27 27 H 1.08001 * 119.92523 * 0.02562 * 5 4 3 28 28 H 1.08004 * 119.92607 * 179.97438 * 6 5 4 29 29 H 1.09004 * 109.47210 * 144.99678 * 8 7 6 30 30 H 1.08994 * 109.47551 * 24.99330 * 8 7 6 31 31 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 32 32 H 1.09003 * 110.56764 * 91.44140 * 20 19 18 33 33 H 1.08998 * 110.56883 * 214.15858 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.1069 -0.0621 0.0016 6 6 5.4843 -0.1751 0.0028 7 6 6.2741 0.9600 0.0023 8 6 7.7757 0.8326 0.0042 9 6 8.2851 0.9154 1.4201 10 1 7.5909 1.0466 2.2370 11 6 9.6369 0.8172 1.6732 12 7 10.0810 0.8840 2.9093 13 14 10.8376 0.5897 0.2604 14 1 11.2789 1.9190 -0.2331 15 1 12.0170 -0.1797 0.7322 16 1 10.1715 -0.1511 -0.8408 17 6 5.6857 2.2138 0.0060 18 6 4.2973 2.3277 0.0002 19 8 3.9683 3.6524 -0.0003 20 6 5.1617 4.3447 -0.4121 21 8 6.2261 3.4673 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.6886 1.8464 0.8899 26 1 1.6886 1.8463 -0.8901 27 1 3.4934 -0.9510 0.0016 28 1 5.9449 -1.1520 0.0040 29 1 8.2095 1.6401 -0.5858 30 1 8.0596 -0.1266 -0.4286 31 1 11.0320 0.8153 3.0873 32 1 5.1731 4.4780 -1.4939 33 1 5.2390 5.3079 0.0921 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260136228.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:06 Heat of formation + Delta-G solvation = -106.034756 kcal Electronic energy + Delta-G solvation = -18059.719115 eV Core-core repulsion = 15050.859338 eV Total energy + Delta-G solvation = -3008.859778 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.09359 -39.56136 -38.39094 -37.25503 -35.34319 -33.54294 -31.00573 -30.48525 -27.76849 -26.70577 -26.33610 -24.09662 -23.84595 -21.92484 -19.04038 -18.91697 -18.48391 -18.10386 -17.30012 -16.85948 -16.72285 -16.36363 -15.85595 -15.29126 -15.02773 -14.77347 -14.50927 -14.17874 -14.01555 -13.74384 -13.56276 -13.32846 -13.04512 -12.71572 -12.39254 -12.10219 -12.04591 -11.76709 -11.58107 -11.52436 -10.79849 -10.73503 -9.32604 -8.99463 -8.30502 -6.35825 0.21965 0.29687 1.36051 1.37893 1.49895 1.87347 2.35115 2.60691 2.64274 2.72026 3.03683 3.59367 3.84337 3.99601 4.02371 4.16429 4.28396 4.37576 4.41889 4.47838 4.56066 4.63163 4.63559 4.90689 4.93254 4.96290 5.12537 5.26485 5.39697 5.52882 5.60638 5.72758 6.17756 6.21310 6.27133 6.68360 7.26818 8.86543 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.028320 B = 0.006048 C = 0.005357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.465532 B = 4628.228634 C = 5225.486837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.404 6.404 3 C 0.121 3.879 4 C -0.094 4.094 5 C -0.083 4.083 6 C -0.115 4.115 7 C -0.052 4.052 8 C 0.026 3.974 9 C -0.518 4.518 10 H 0.022 0.978 11 C 0.008 3.992 12 N -0.950 5.950 13 Si 0.952 3.048 14 H -0.270 1.270 15 H -0.279 1.279 16 H -0.240 1.240 17 C 0.012 3.988 18 C 0.024 3.976 19 O -0.316 6.316 20 C 0.202 3.798 21 O -0.329 6.329 22 H 0.049 0.951 23 H 0.054 0.946 24 H 0.102 0.898 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.164 0.836 28 H 0.148 0.852 29 H 0.022 0.978 30 H 0.045 0.955 31 H 0.268 0.732 32 H 0.106 0.894 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.385 1.600 -10.756 20.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C 0.045 3.955 4 C -0.095 4.095 5 C -0.101 4.101 6 C -0.133 4.133 7 C -0.053 4.053 8 C -0.011 4.011 9 C -0.556 4.556 10 H 0.040 0.960 11 C -0.189 4.189 12 N -0.590 5.590 13 Si 0.775 3.225 14 H -0.195 1.195 15 H -0.204 1.204 16 H -0.164 1.164 17 C -0.032 4.032 18 C -0.020 4.020 19 O -0.233 6.233 20 C 0.091 3.909 21 O -0.246 6.246 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.120 0.880 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.182 0.818 28 H 0.166 0.834 29 H 0.040 0.960 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.123 0.877 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -17.122 1.643 -10.550 20.178 hybrid contribution 0.848 0.651 0.132 1.078 sum -16.273 2.295 -10.417 19.458 Atomic orbital electron populations 1.22972 0.78866 1.04204 1.01022 1.87805 1.21831 1.27088 1.95656 1.20975 0.87673 0.85224 1.01603 1.18838 0.95259 0.89470 1.05897 1.20938 0.93650 0.97012 0.98504 1.21108 0.93548 0.97702 1.00969 1.19437 0.97474 0.89528 0.98871 1.18560 0.88897 0.97802 0.95810 1.21080 0.92607 1.50081 0.91863 0.95971 1.25986 1.00259 0.93981 0.98624 1.70060 1.15259 1.52060 1.21623 0.85632 0.78032 0.79225 0.79640 1.19479 1.20395 1.16364 1.19698 0.90732 0.86674 1.06093 1.19484 0.91601 0.85065 1.05838 1.87228 1.36506 1.14186 1.85386 1.26084 0.69769 0.93321 1.01708 1.87400 1.36971 1.14941 1.85285 0.93266 0.92754 0.87980 0.91587 0.90559 0.81836 0.83395 0.95962 0.93667 0.92294 0.87689 0.82628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.40 -9.35 9.18 -148.98 -1.37 -10.72 16 3 C 0.12 2.98 6.27 71.24 0.45 3.43 16 4 C -0.09 -3.02 5.89 -19.79 -0.12 -3.13 16 5 C -0.08 -2.67 9.37 22.27 0.21 -2.47 16 6 C -0.12 -4.30 9.67 22.27 0.22 -4.09 16 7 C -0.05 -2.34 5.08 -19.79 -0.10 -2.44 16 8 C 0.03 1.33 4.17 29.10 0.12 1.45 16 9 C -0.52 -31.47 9.65 25.60 0.25 -31.23 16 10 H 0.02 1.51 7.98 -2.91 -0.02 1.49 16 11 C 0.01 0.50 5.47 84.66 0.46 0.97 16 12 N -0.95 -61.15 13.96 21.45 0.30 -60.85 16 13 Si 0.95 44.95 27.47 68.60 1.88 46.84 16 14 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 15 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 16 H -0.24 -10.34 6.54 99.48 0.65 -9.69 16 17 C 0.01 0.52 6.84 22.59 0.15 0.67 16 18 C 0.02 0.89 6.85 22.59 0.15 1.05 16 19 O -0.32 -10.16 11.39 -76.06 -0.87 -11.02 16 20 C 0.20 5.70 8.89 113.37 1.01 6.71 16 21 O -0.33 -13.75 11.39 -76.06 -0.87 -14.61 16 22 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 23 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 25 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 27 H 0.16 4.42 7.00 -2.91 -0.02 4.40 16 28 H 0.15 4.97 8.06 -2.91 -0.02 4.95 16 29 H 0.02 1.11 7.55 -2.38 -0.02 1.09 16 30 H 0.05 2.11 7.10 -2.39 -0.02 2.09 16 31 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 32 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.16 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -75.10 286.29 4.19 -70.91 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: 1.06 Total: 6.93 kcal Atomic # 6 Polarization: -31.52 SS G_CDS: 4.05 Total: -27.47 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: 0.30 Total: -60.85 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -3.10 Total: -36.35 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.84 kcal Total: -75.10 4.19 -70.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260136228.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.125 kcal (2) G-P(sol) polarization free energy of solvation -75.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds