Wall clock time and date at job start Mon Mar 30 2020 06:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99789 * 2 1 4 4 C 1.50702 * 109.47206 * 179.97438 * 3 2 1 5 5 C 1.38549 * 119.98480 * 269.97732 * 4 3 2 6 6 C 1.39262 * 119.82470 * 179.97438 * 5 4 3 7 7 C 1.38552 * 119.82837 * 359.74630 * 6 5 4 8 8 C 1.38230 * 120.02875 * 0.53420 * 7 6 5 9 9 C 1.38238 * 119.98386 * 89.99915 * 4 3 2 10 10 C 1.50699 * 119.92835 * 359.97438 * 9 4 3 11 11 C 1.50698 * 109.47196 * 85.02223 * 10 9 4 12 12 H 1.08000 * 120.00005 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99941 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99732 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 120.00055 * 359.97438 * 13 11 10 16 16 H 1.48510 * 109.46691 * 90.00287 * 15 13 11 17 17 H 1.48498 * 109.47122 * 209.99865 * 15 13 11 18 18 H 1.48499 * 109.47363 * 330.00352 * 15 13 11 19 19 O 1.36505 * 108.64122 * 180.02562 * 6 5 4 20 20 C 1.43992 * 105.48148 * 342.72138 * 19 6 5 21 21 O 1.36498 * 131.53286 * 0.02562 * 5 4 3 22 22 H 1.08999 * 109.47592 * 300.00226 * 1 2 3 23 23 H 1.09003 * 109.46840 * 60.00395 * 1 2 3 24 24 H 1.08997 * 109.46840 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47278 * 60.00181 * 3 2 1 26 26 H 1.09001 * 109.47540 * 300.00040 * 3 2 1 27 27 H 1.08001 * 119.98190 * 180.27279 * 7 6 5 28 28 H 1.08002 * 119.93112 * 179.74722 * 8 7 6 29 29 H 1.09008 * 109.46680 * 205.02125 * 10 9 4 30 30 H 1.08997 * 109.47430 * 325.01893 * 10 9 4 31 31 H 0.96995 * 119.99767 * 179.97438 * 14 13 11 32 32 H 1.09007 * 110.57188 * 268.55811 * 20 19 6 33 33 H 1.08999 * 110.57399 * 145.68141 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2023 1.1326 1.2010 6 6 5.5906 1.0222 1.1977 7 6 6.2742 0.9615 -0.0059 8 6 5.5799 1.0217 -1.1996 9 6 4.2017 1.1318 -1.1964 10 6 3.4490 1.1906 -2.5007 11 6 3.2029 2.6296 -2.8743 12 1 3.5558 3.4224 -2.2313 13 6 2.5272 2.9342 -4.0369 14 7 2.3129 4.1901 -4.3631 15 14 1.9175 1.5631 -5.1493 16 1 0.5425 1.1730 -4.7459 17 1 1.9048 2.0363 -6.5568 18 1 2.8201 0.3900 -5.0295 19 8 6.0286 0.9877 2.4901 20 6 4.9341 1.4885 3.2804 21 8 3.7704 1.1670 2.4954 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6886 1.8464 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 7.3504 0.8714 -0.0113 28 1 6.1147 0.9784 -2.1369 29 1 4.0370 0.7079 -3.2815 30 1 2.4949 0.6748 -2.3932 31 1 1.8378 4.4044 -5.1812 32 1 5.0201 2.5669 3.4141 33 1 4.8961 0.9837 4.2456 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260139047.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:08 Heat of formation + Delta-G solvation = -83.665308 kcal Electronic energy + Delta-G solvation = -18436.420202 eV Core-core repulsion = 15428.530436 eV Total energy + Delta-G solvation = -3007.889766 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.82132 -38.36084 -36.87497 -35.93306 -33.27202 -31.54258 -30.64197 -27.76811 -26.76269 -25.44576 -24.91706 -23.07567 -21.57405 -20.57920 -17.46155 -17.20416 -16.97337 -16.83464 -15.92478 -15.73353 -15.20243 -14.69101 -14.32377 -13.94456 -13.88957 -13.28968 -12.69345 -12.56128 -12.52934 -12.43690 -11.92909 -11.72061 -11.48703 -11.16125 -10.87465 -10.70788 -10.29060 -10.09770 -9.86549 -9.41233 -9.19013 -8.64480 -8.23538 -7.48002 -6.13988 -4.14067 1.60143 1.69953 3.07638 3.25119 3.33709 3.37430 3.72395 3.91986 4.36448 4.50467 4.84008 4.91095 5.01313 5.17959 5.42422 5.48703 5.51985 5.62040 5.72845 5.76259 5.87051 5.92253 5.94707 6.23532 6.46134 6.51545 6.76926 6.83930 6.86639 7.05036 7.41154 7.52142 7.57268 7.62261 8.41255 8.90478 9.45852 10.98374 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.023419 B = 0.007627 C = 0.006429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.340939 B = 3670.361731 C = 4354.390306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.102 3.898 4 C -0.070 4.070 5 C 0.049 3.951 6 C -0.004 4.004 7 C -0.091 4.091 8 C -0.119 4.119 9 C 0.001 3.999 10 C 0.014 3.986 11 C -0.516 4.516 12 H 0.075 0.925 13 C 0.073 3.927 14 N -0.897 5.897 15 Si 0.874 3.126 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.263 1.263 19 O -0.316 6.316 20 C 0.213 3.787 21 O -0.309 6.309 22 H 0.036 0.964 23 H 0.044 0.956 24 H 0.080 0.920 25 H 0.048 0.952 26 H 0.091 0.909 27 H 0.128 0.872 28 H 0.138 0.862 29 H 0.033 0.967 30 H 0.034 0.966 31 H 0.265 0.735 32 H 0.078 0.922 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.109 -6.385 10.729 12.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.306 6.306 3 C 0.026 3.974 4 C -0.071 4.071 5 C 0.005 3.995 6 C -0.048 4.048 7 C -0.110 4.110 8 C -0.137 4.137 9 C 0.000 4.000 10 C -0.023 4.023 11 C -0.554 4.554 12 H 0.093 0.907 13 C -0.130 4.130 14 N -0.535 5.535 15 Si 0.701 3.299 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.187 1.187 19 O -0.233 6.233 20 C 0.101 3.899 21 O -0.225 6.225 22 H 0.055 0.945 23 H 0.062 0.938 24 H 0.098 0.902 25 H 0.066 0.934 26 H 0.109 0.891 27 H 0.146 0.854 28 H 0.155 0.845 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.124 -6.528 10.795 12.793 hybrid contribution -0.517 -0.186 -0.299 0.626 sum 1.607 -6.714 10.496 12.563 Atomic orbital electron populations 1.22684 0.81677 1.02077 1.00002 1.87901 1.19090 1.28098 1.95483 1.21351 0.89067 0.84801 1.02160 1.18468 0.94667 1.05482 0.88489 1.19558 0.91473 1.03560 0.84933 1.19586 0.91500 1.08250 0.85422 1.20016 0.99755 1.02961 0.88222 1.20856 0.93723 1.02170 0.96943 1.19999 0.93417 0.91535 0.95012 1.18869 0.95452 0.98874 0.89094 1.20882 1.37011 0.89893 1.07586 0.90667 1.24965 0.95348 0.95326 0.97319 1.69894 1.41430 1.17217 1.24925 0.86859 0.79893 0.82987 0.80189 1.20097 1.21202 1.18711 1.87277 1.38671 1.82483 1.14832 1.25497 0.71806 0.99462 0.93156 1.87333 1.33160 1.87227 1.14824 0.94531 0.93771 0.90153 0.93353 0.89084 0.85357 0.84450 0.94835 0.94810 0.92509 0.90474 0.85872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.60 16 2 O -0.39 -7.45 10.68 -35.23 -0.38 -7.83 16 3 C 0.10 2.02 5.26 36.01 0.19 2.21 16 4 C -0.07 -1.45 5.52 -104.51 -0.58 -2.03 16 5 C 0.05 0.94 6.81 -39.09 -0.27 0.68 16 6 C 0.00 -0.08 7.15 -39.08 -0.28 -0.35 16 7 C -0.09 -1.53 10.06 -39.47 -0.40 -1.93 16 8 C -0.12 -2.19 9.67 -39.58 -0.38 -2.57 16 9 C 0.00 0.02 5.07 -104.62 -0.53 -0.51 16 10 C 0.01 0.33 3.49 -29.04 -0.10 0.23 16 11 C -0.52 -13.92 8.87 -34.44 -0.31 -14.22 16 12 H 0.08 2.22 7.98 -52.49 -0.42 1.80 16 13 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 14 N -0.90 -26.47 13.96 55.43 0.77 -25.69 16 15 Si 0.87 20.71 27.47 -169.99 -4.67 16.04 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.26 -5.98 6.54 56.52 0.37 -5.61 16 19 O -0.32 -5.08 11.40 -45.70 -0.52 -5.60 16 20 C 0.21 2.79 8.89 101.05 0.90 3.69 16 21 O -0.31 -5.35 11.39 -45.68 -0.52 -5.87 16 22 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 26 H 0.09 1.96 6.15 -51.93 -0.32 1.64 16 27 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 28 H 0.14 2.26 8.06 -52.49 -0.42 1.84 16 29 H 0.03 0.76 7.11 -51.92 -0.37 0.39 16 30 H 0.03 0.79 6.40 -51.93 -0.33 0.46 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 33 H 0.12 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 283.77 15.07 4.28 4.28 Total: -1.00 -31.19 283.77 -5.76 -36.95 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -3.99 Total: -0.98 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -0.74 Total: -11.29 kcal Atomic # 7 Polarization: -26.47 SS G_CDS: 0.77 Total: -25.69 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -1.42 Total: -19.30 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.67 Total: 16.04 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.19 -5.76 -36.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260139047.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.719 kcal (2) G-P(sol) polarization free energy of solvation -31.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds